Wall clock time and date at job start Tue Mar 31 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.53001 * 109.47542 * 120.00188 * 2 1 3 5 5 C 1.53001 * 109.46802 * 295.00381 * 4 2 1 6 6 C 1.52994 * 109.47033 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47130 * 59.99756 * 6 5 4 8 8 C 1.52997 * 109.47338 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47343 * 299.99573 * 6 5 4 10 10 C 1.50705 * 109.47224 * 240.00377 * 2 1 3 11 11 O 1.21289 * 119.99597 * 240.00139 * 10 2 1 12 12 N 1.34776 * 120.00198 * 59.99303 * 10 2 1 13 13 C 1.46502 * 119.99960 * 179.97438 * 12 10 2 14 14 C 1.53952 * 113.73599 * 106.26593 * 13 12 10 15 15 N 1.47808 * 86.03517 * 90.88217 * 14 13 12 16 16 C 1.36933 * 134.45725 * 204.64095 * 15 14 13 17 17 H 1.07996 * 120.00846 * 173.35075 * 16 15 14 18 18 C 1.38814 * 119.99714 * 353.35046 * 16 15 14 19 19 N 1.31625 * 120.00245 * 5.06241 * 18 16 15 20 20 Si 1.86809 * 120.00055 * 185.06239 * 18 16 15 21 21 H 1.48500 * 109.46973 * 94.98689 * 20 18 16 22 22 H 1.48500 * 109.47017 * 214.98741 * 20 18 16 23 23 H 1.48499 * 109.46841 * 334.98626 * 20 18 16 24 24 C 1.47582 * 91.05267 * 24.54774 * 15 14 13 25 25 H 1.09006 * 109.46884 * 60.00187 * 1 2 3 26 26 H 1.09005 * 109.46782 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47309 * 299.99993 * 1 2 3 28 28 H 1.09003 * 109.46547 * 54.99769 * 4 2 1 29 29 H 1.08999 * 109.47424 * 174.99973 * 4 2 1 30 30 H 1.09002 * 109.46770 * 299.99789 * 5 4 2 31 31 H 1.08999 * 109.47464 * 59.99617 * 5 4 2 32 32 H 1.08993 * 109.47472 * 60.00488 * 7 6 5 33 33 H 1.09000 * 109.46866 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47326 * 299.99827 * 7 6 5 35 35 H 1.08999 * 109.47165 * 59.99793 * 8 6 5 36 36 H 1.08996 * 109.47444 * 180.02562 * 8 6 5 37 37 H 1.09004 * 109.47243 * 299.99949 * 8 6 5 38 38 H 1.09007 * 109.46838 * 60.00100 * 9 6 5 39 39 H 1.08996 * 109.47161 * 180.02562 * 9 6 5 40 40 H 1.08998 * 109.47143 * 300.00664 * 9 6 5 41 41 H 0.96996 * 119.99562 * 0.02562 * 12 10 2 42 42 H 1.09000 * 112.94445 * 334.67371 * 13 12 10 43 43 H 1.09004 * 113.76381 * 205.14881 * 14 13 12 44 44 H 1.09003 * 113.76793 * 336.54093 * 14 13 12 45 45 H 0.96995 * 119.99775 * 180.02562 * 19 18 16 46 46 H 1.08997 * 113.76639 * 221.14963 * 24 15 14 47 47 H 1.08998 * 113.76570 * 89.75452 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 0.0689 2.4953 6 6 2.1448 -0.6527 3.7445 7 6 3.6696 -0.7629 3.6835 8 6 1.7405 0.1377 4.9905 9 6 1.5343 -2.0541 3.8087 10 6 2.0324 -0.7103 -1.2305 11 8 2.7297 -1.6965 -1.1192 12 7 1.7067 -0.2499 -2.4546 13 6 2.1956 -0.9402 -3.6508 14 6 1.1119 -1.7507 -4.3849 15 7 0.8686 -0.5214 -5.1688 16 6 -0.2022 -0.0210 -5.8601 17 1 -0.1603 0.9759 -6.2732 18 6 -1.3418 -0.7953 -6.0300 19 7 -1.4328 -1.9701 -5.4434 20 14 -2.7462 -0.1700 -7.0913 21 1 -2.6045 -0.7091 -8.4677 22 1 -4.0395 -0.6177 -6.5149 23 1 -2.7109 1.3140 -7.1348 24 6 2.2418 -0.0490 -4.9052 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6054 -1.7198 1.2950 29 1 3.1264 -0.7995 1.2055 30 1 2.0699 1.0674 2.4493 31 1 0.5490 0.1471 2.5390 32 1 4.1046 0.2354 3.6379 33 1 4.0325 -1.2774 4.5733 34 1 3.9580 -1.3259 2.7958 35 1 0.6543 0.2167 5.0342 36 1 2.1039 -0.3761 5.8805 37 1 2.1758 1.1360 4.9447 38 1 1.8227 -2.6171 2.9209 39 1 1.8969 -2.5680 4.6989 40 1 0.4480 -1.9756 3.8521 41 1 1.1493 0.5389 -2.5435 42 1 3.1157 -1.4970 -3.4739 43 1 1.5065 -2.5776 -4.9755 44 1 0.2749 -2.0412 -3.7500 45 1 -2.2289 -2.5112 -5.5625 46 1 2.3050 1.0166 -4.6851 47 1 2.9688 -0.3749 -5.6491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753391802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:01 Heat of formation + Delta-G solvation = -34.935063 kcal Electronic energy + Delta-G solvation = -22889.876171 eV Core-core repulsion = 19686.527158 eV Total energy + Delta-G solvation = -3203.349013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.17834 -39.53877 -38.68182 -35.37825 -34.86254 -33.56340 -29.95248 -29.21065 -28.10252 -28.04637 -26.60245 -26.25294 -25.02589 -23.13321 -20.92013 -20.75386 -19.49413 -18.74937 -17.93350 -17.07470 -16.87798 -16.40385 -15.88406 -15.72038 -15.48353 -15.01300 -14.90410 -14.75646 -14.50023 -14.30303 -13.81894 -13.59562 -13.31028 -13.20120 -13.11593 -12.90283 -12.82504 -12.49880 -12.46482 -12.39049 -12.30854 -12.11401 -12.02595 -11.72096 -11.70110 -11.40096 -11.30513 -11.23435 -11.15168 -10.95790 -10.61734 -9.89416 -8.93323 -7.90565 -5.24345 1.45680 1.47775 1.56370 1.70839 2.29836 2.47062 3.25674 3.41444 3.72841 3.76365 3.86712 3.97079 4.06056 4.11539 4.19849 4.44130 4.51292 4.56525 4.59097 4.68295 4.75567 4.79208 4.83273 4.85985 4.90019 4.91665 4.99148 5.00916 5.07891 5.13495 5.14473 5.16619 5.19427 5.24764 5.29135 5.36675 5.40265 5.48790 5.53530 5.62317 5.65806 5.76061 5.90752 6.69242 6.89902 7.34485 7.60745 8.55580 9.26358 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026808 B = 0.003319 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.209012 B = 8432.991578 C = 8928.831538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.121 0.879 4 C -0.095 4.095 5 C -0.104 4.104 6 C -0.070 4.070 7 C -0.144 4.144 8 C -0.137 4.137 9 C -0.146 4.146 10 C 0.511 3.489 11 O -0.588 6.588 12 N -0.691 5.691 13 C 0.111 3.889 14 C 0.150 3.850 15 N -0.634 5.634 16 C -0.231 4.231 17 H 0.090 0.910 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.976 3.024 21 H -0.292 1.292 22 H -0.297 1.297 23 H -0.262 1.262 24 C 0.119 3.881 25 H 0.056 0.944 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.409 0.591 42 H 0.094 0.906 43 H 0.019 0.981 44 H 0.035 0.965 45 H 0.246 0.754 46 H 0.071 0.929 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.134 7.595 19.072 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.139 0.861 4 C -0.133 4.133 5 C -0.141 4.141 6 C -0.070 4.070 7 C -0.201 4.201 8 C -0.195 4.195 9 C -0.203 4.203 10 C 0.299 3.701 11 O -0.469 6.469 12 N -0.340 5.340 13 C 0.004 3.996 14 C 0.023 3.977 15 N -0.361 5.361 16 C -0.360 4.360 17 H 0.107 0.893 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.804 3.196 21 H -0.219 1.219 22 H -0.224 1.224 23 H -0.187 1.187 24 C -0.007 4.007 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.245 0.755 42 H 0.112 0.888 43 H 0.037 0.963 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.089 0.911 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.327 6.930 19.015 21.524 hybrid contribution -1.161 -0.218 -1.241 1.713 sum 6.167 6.713 17.774 19.975 Atomic orbital electron populations 1.21803 0.92382 1.02007 1.03625 1.21357 0.97835 1.01508 0.91374 0.86102 1.21452 1.00919 0.98690 0.92263 1.21689 1.01448 0.98815 0.92164 1.20548 0.95551 0.95446 0.95496 1.21931 0.94897 1.01876 1.01411 1.21835 1.01415 0.99863 0.96343 1.21946 1.00703 0.96292 1.01337 1.21420 0.79032 0.84156 0.85459 1.90634 1.40543 1.28238 1.87437 1.45560 1.52445 1.31497 1.04522 1.22496 0.96659 0.95161 0.85271 1.22569 0.94400 0.89683 0.91056 1.46404 1.08053 1.20595 1.61062 1.19438 0.91768 0.98273 1.26491 0.89268 1.25657 1.01289 0.96816 1.02210 1.70056 1.28997 1.13326 1.47737 0.85099 0.78245 0.78221 0.78012 1.21945 1.22438 1.18658 1.23054 0.86509 0.98373 0.92721 0.92508 0.94103 0.88683 0.92953 0.92016 0.90714 0.90973 0.92143 0.92547 0.93494 0.92442 0.92519 0.92128 0.93627 0.92466 0.92569 0.75535 0.88772 0.96287 0.94632 0.94485 0.91087 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.84 71.98 0.64 -2.56 16 2 C -0.10 -2.34 2.72 -11.54 -0.03 -2.37 16 3 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.10 -2.14 3.32 30.59 0.10 -2.04 16 5 C -0.10 -1.69 4.02 30.59 0.12 -1.57 16 6 C -0.07 -1.10 0.80 -52.18 -0.04 -1.15 16 7 C -0.14 -2.33 8.12 71.98 0.58 -1.74 16 8 C -0.14 -1.74 8.47 71.98 0.61 -1.13 16 9 C -0.15 -2.54 8.12 71.98 0.58 -1.95 16 10 C 0.51 16.92 7.15 87.66 0.63 17.54 16 11 O -0.59 -23.80 15.54 -3.06 -0.05 -23.85 16 12 N -0.69 -23.56 5.26 -447.37 -2.36 -25.92 16 13 C 0.11 4.31 4.40 46.75 0.21 4.51 16 14 C 0.15 7.40 7.24 86.44 0.63 8.03 16 15 N -0.63 -31.59 3.70 -716.71 -2.65 -34.24 16 16 C -0.23 -12.60 10.70 84.03 0.90 -11.70 16 17 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 18 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 19 N -0.95 -57.97 11.51 21.65 0.25 -57.72 16 20 Si 0.98 45.22 29.56 68.60 2.03 47.25 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.12 4.52 8.68 86.48 0.75 5.27 16 25 H 0.06 1.38 7.56 -2.38 -0.02 1.36 16 26 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.09 1.60 6.56 -2.39 -0.02 1.58 16 28 H 0.05 1.38 6.43 -2.39 -0.02 1.36 16 29 H 0.06 1.53 6.24 -2.39 -0.01 1.51 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.09 6.57 -2.39 -0.02 1.08 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.90 6.43 -2.39 -0.02 0.89 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.04 0.94 6.43 -2.38 -0.02 0.93 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.41 12.90 8.16 -92.71 -0.76 12.15 16 42 H 0.09 3.57 7.51 -2.39 -0.02 3.55 16 43 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.04 2.00 7.37 -2.39 -0.02 1.98 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 46 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -68.74 366.24 3.54 -65.20 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.17 Total: 23.44 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.14 Total: 5.84 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -4.76 Total: -117.87 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.74 3.54 -65.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753391802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.265 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds