Wall clock time and date at job start Tue Mar 31 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47175 * 2 1 4 4 C 1.53000 * 109.47238 * 119.99832 * 2 1 3 5 5 C 1.53001 * 109.47341 * 174.99821 * 4 2 1 6 6 H 1.09002 * 109.46665 * 55.00128 * 5 4 2 7 7 C 1.52997 * 109.47023 * 295.00272 * 5 4 2 8 8 C 1.52997 * 109.47068 * 175.00142 * 5 4 2 9 9 C 1.50704 * 109.46727 * 185.00130 * 8 5 4 10 10 O 1.21278 * 120.00421 * 0.02562 * 9 8 5 11 11 N 1.34782 * 119.99482 * 180.02562 * 9 8 5 12 12 C 1.46502 * 119.99467 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46729 * 179.97438 * 12 11 9 14 14 C 1.53495 * 114.20448 * 175.00023 * 13 12 11 15 15 N 1.47066 * 87.98658 * 87.51959 * 14 13 12 16 16 C 1.36937 * 136.06113 * 206.85859 * 15 14 13 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46896 * 90.00557 * 20 18 16 22 22 H 1.48506 * 109.46723 * 210.00327 * 20 18 16 23 23 H 1.48496 * 109.47378 * 330.00014 * 20 18 16 24 24 C 1.47067 * 87.88528 * 27.11900 * 15 14 13 25 25 H 1.09005 * 109.47214 * 299.99745 * 1 2 3 26 26 H 1.08997 * 109.47217 * 59.99828 * 1 2 3 27 27 H 1.08998 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47370 * 240.00604 * 2 1 3 29 29 H 1.08994 * 109.46961 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47189 * 300.00190 * 3 2 1 31 31 H 1.09005 * 109.46841 * 60.00027 * 3 2 1 32 32 H 1.09004 * 109.46775 * 55.00050 * 4 2 1 33 33 H 1.09000 * 109.47533 * 295.00501 * 4 2 1 34 34 H 1.09006 * 109.47162 * 59.99951 * 7 5 4 35 35 H 1.09006 * 109.46832 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.47529 * 299.99945 * 7 5 4 37 37 H 1.08995 * 109.46925 * 65.00524 * 8 5 4 38 38 H 1.09001 * 109.47156 * 304.99944 * 8 5 4 39 39 H 0.96991 * 120.00203 * 0.02562 * 11 9 8 40 40 H 1.09003 * 109.46922 * 60.00635 * 12 11 9 41 41 H 1.08994 * 109.47369 * 300.00007 * 12 11 9 42 42 H 1.08994 * 113.28034 * 41.93499 * 13 12 11 43 43 H 1.09005 * 113.46950 * 332.74525 * 14 13 12 44 44 H 1.08994 * 113.52293 * 202.31009 * 14 13 12 45 45 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 46 46 H 1.09007 * 113.46858 * 87.65629 * 24 15 14 47 47 H 1.08993 * 113.47208 * 218.09965 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 3.9954 0.1612 1.0527 7 6 3.9649 -1.7252 0.0127 8 6 4.0851 -1.4394 2.4918 9 6 5.5921 -1.4345 2.4821 10 8 6.1910 -0.9880 1.5267 11 7 6.2743 -1.9264 3.5353 12 6 7.7393 -1.9222 3.5256 13 6 8.2596 -2.5305 4.8296 14 6 9.7852 -2.6910 4.8845 15 7 9.8591 -1.3168 5.4030 16 6 10.7834 -0.3065 5.3904 17 1 11.7350 -0.4514 4.9008 18 6 10.4968 0.9043 6.0059 19 7 9.3368 1.0810 6.6022 20 14 11.7574 2.2826 5.9880 21 1 11.5488 3.1285 4.7854 22 1 11.6013 3.1121 7.2098 23 1 13.1242 1.7030 5.9546 24 6 8.5061 -1.5073 5.9470 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 3.5942 -1.2917 -0.9163 35 1 5.0513 -1.8031 -0.0312 36 1 3.5343 -2.7174 0.1479 37 1 3.7257 -2.4643 2.5834 38 1 3.7253 -0.8513 3.3361 39 1 5.7954 -2.2839 4.2993 40 1 8.0991 -0.8973 3.4343 41 1 8.0988 -2.5102 2.6812 42 1 7.7056 -3.4150 5.1436 43 1 10.2447 -2.8099 3.9032 44 1 10.1180 -3.4433 5.5995 45 1 9.1367 1.9269 7.0326 46 1 8.4972 -1.9445 6.9455 47 1 7.8780 -0.6199 5.8693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753413839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:40 Heat of formation + Delta-G solvation = -13.414725 kcal Electronic energy + Delta-G solvation = -22450.435264 eV Core-core repulsion = 19248.019443 eV Total energy + Delta-G solvation = -3202.415821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.74231 -38.35368 -37.42050 -34.22324 -33.52461 -32.15858 -29.16008 -27.71506 -27.31892 -26.71454 -25.51655 -24.58034 -22.47531 -21.41772 -20.03007 -19.49896 -18.63527 -16.82802 -16.63740 -15.91113 -15.51459 -15.27711 -14.92214 -14.66599 -14.06332 -13.97027 -13.79467 -13.61226 -13.22311 -12.84865 -12.56897 -12.50258 -12.42058 -12.03927 -11.82959 -11.53914 -11.50377 -11.35919 -11.11903 -11.01650 -10.94134 -10.74648 -10.67113 -10.50514 -10.46067 -10.40202 -9.91130 -9.79695 -9.41217 -9.21760 -8.79809 -8.58732 -6.86860 -5.75355 -3.07446 2.96537 3.41504 3.45987 3.47601 3.51798 4.47962 4.56200 4.67698 4.72604 4.91360 5.03733 5.14556 5.28242 5.33782 5.36441 5.41619 5.43924 5.47702 5.48290 5.55492 5.63493 5.66083 5.69121 5.75045 5.80307 5.94029 5.95768 6.03670 6.08592 6.10886 6.18382 6.24984 6.37528 6.43561 6.49826 6.54670 6.61010 6.74072 6.88226 7.19086 7.30621 7.56558 7.86562 7.99427 8.57702 9.05494 9.72237 10.65358 11.42197 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.003163 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.440593 B = 8850.679743 C = 9608.463417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.110 4.110 5 C -0.078 4.078 6 H 0.082 0.918 7 C -0.153 4.153 8 C -0.137 4.137 9 C 0.508 3.492 10 O -0.542 6.542 11 N -0.725 5.725 12 C 0.151 3.849 13 C -0.161 4.161 14 C 0.126 3.874 15 N -0.610 5.610 16 C -0.217 4.217 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.159 3.841 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.397 0.603 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.253 0.747 46 H 0.024 0.976 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 -6.950 -9.404 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.209 4.209 4 C -0.148 4.148 5 C -0.096 4.096 6 H 0.100 0.900 7 C -0.210 4.210 8 C -0.178 4.178 9 C 0.295 3.705 10 O -0.419 6.419 11 N -0.376 5.376 12 C 0.028 3.972 13 C -0.181 4.181 14 C -0.001 4.001 15 N -0.336 5.336 16 C -0.344 4.344 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.033 3.967 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.230 0.770 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.768 -6.279 -10.015 20.516 hybrid contribution 0.494 0.510 0.744 1.029 sum -16.273 -5.769 -9.271 19.597 Atomic orbital electron populations 1.21846 0.95585 1.01436 1.01566 1.21156 0.95220 0.96554 0.98788 1.21914 1.01736 0.95812 1.01409 1.21717 0.94992 1.00303 0.97771 1.20939 0.94471 1.00667 0.93564 0.89990 1.21990 1.03421 0.98279 0.97318 1.21758 0.92450 1.03210 1.00337 1.20618 0.89969 0.77461 0.82495 1.90660 1.70959 1.46060 1.34239 1.46089 1.08143 1.63105 1.20213 1.20988 0.77764 1.02466 0.95997 1.23266 0.97842 0.99620 0.97351 1.22353 0.91599 0.88997 0.97104 1.45632 1.16188 1.08285 1.63483 1.18931 0.95433 0.89991 1.30092 0.90154 1.24782 0.97506 0.97841 1.00326 1.69820 1.21741 1.24606 1.40541 0.86120 0.80431 0.82087 0.77144 1.21454 1.21665 1.20688 1.22136 0.87722 0.94974 0.91858 0.92807 0.92953 0.92898 0.90919 0.92004 0.93082 0.92794 0.92058 0.91957 0.92944 0.90625 0.93650 0.89314 0.89071 0.76959 0.90014 0.92451 0.91136 0.94055 0.94694 0.93728 0.95821 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.10 -0.83 2.78 -90.62 -0.25 -1.08 16 3 C -0.15 -1.35 8.96 37.16 0.33 -1.02 16 4 C -0.11 -0.95 4.15 -26.73 -0.11 -1.06 16 5 C -0.08 -0.84 1.90 -90.62 -0.17 -1.01 16 6 H 0.08 1.05 6.16 -51.93 -0.32 0.73 16 7 C -0.15 -1.72 8.69 37.16 0.32 -1.40 16 8 C -0.14 -1.48 5.17 -27.88 -0.14 -1.62 16 9 C 0.51 7.71 7.55 -10.98 -0.08 7.63 16 10 O -0.54 -10.35 13.97 5.56 0.08 -10.27 16 11 N -0.72 -10.73 5.56 -60.29 -0.33 -11.06 16 12 C 0.15 2.73 5.50 -4.04 -0.02 2.71 16 13 C -0.16 -2.88 4.18 -90.10 -0.38 -3.26 16 14 C 0.13 2.57 8.26 -8.51 -0.07 2.50 16 15 N -0.61 -15.70 3.62 -184.76 -0.67 -16.37 16 16 C -0.22 -6.18 10.75 -15.06 -0.16 -6.34 16 17 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.52 11.51 55.49 0.64 -26.88 16 20 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 C 0.16 3.65 6.89 -8.51 -0.06 3.59 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 29 H 0.06 0.63 6.46 -51.93 -0.34 0.29 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.54 6.46 -51.93 -0.34 0.20 16 35 H 0.07 1.06 5.95 -51.93 -0.31 0.76 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 4.71 8.47 -40.82 -0.35 4.36 16 40 H 0.08 1.86 7.91 -51.93 -0.41 1.45 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 1.88 7.09 -51.93 -0.37 1.51 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -32.62 368.09 -8.95 -41.57 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.64 Total: 1.34 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.55 Total: -1.41 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.36 Total: -54.32 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.62 -8.95 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753413839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.156 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds