Wall clock time and date at job start Tue Mar 31 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47175 * 2 1 4 4 C 1.53000 * 109.47238 * 119.99832 * 2 1 3 5 5 C 1.53001 * 109.47341 * 174.99821 * 4 2 1 6 6 H 1.09002 * 109.46665 * 55.00128 * 5 4 2 7 7 C 1.52997 * 109.47023 * 295.00272 * 5 4 2 8 8 C 1.52997 * 109.47068 * 175.00142 * 5 4 2 9 9 C 1.50704 * 109.46727 * 185.00130 * 8 5 4 10 10 O 1.21278 * 120.00421 * 0.02562 * 9 8 5 11 11 N 1.34782 * 119.99482 * 180.02562 * 9 8 5 12 12 C 1.46502 * 119.99467 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46729 * 179.97438 * 12 11 9 14 14 C 1.53495 * 114.20448 * 175.00023 * 13 12 11 15 15 N 1.47066 * 87.98658 * 87.51959 * 14 13 12 16 16 C 1.36937 * 136.06113 * 206.85859 * 15 14 13 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46896 * 90.00557 * 20 18 16 22 22 H 1.48506 * 109.46723 * 210.00327 * 20 18 16 23 23 H 1.48496 * 109.47378 * 330.00014 * 20 18 16 24 24 C 1.47067 * 87.88528 * 27.11900 * 15 14 13 25 25 H 1.09005 * 109.47214 * 299.99745 * 1 2 3 26 26 H 1.08997 * 109.47217 * 59.99828 * 1 2 3 27 27 H 1.08998 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47370 * 240.00604 * 2 1 3 29 29 H 1.08994 * 109.46961 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47189 * 300.00190 * 3 2 1 31 31 H 1.09005 * 109.46841 * 60.00027 * 3 2 1 32 32 H 1.09004 * 109.46775 * 55.00050 * 4 2 1 33 33 H 1.09000 * 109.47533 * 295.00501 * 4 2 1 34 34 H 1.09006 * 109.47162 * 59.99951 * 7 5 4 35 35 H 1.09006 * 109.46832 * 179.97438 * 7 5 4 36 36 H 1.08999 * 109.47529 * 299.99945 * 7 5 4 37 37 H 1.08995 * 109.46925 * 65.00524 * 8 5 4 38 38 H 1.09001 * 109.47156 * 304.99944 * 8 5 4 39 39 H 0.96991 * 120.00203 * 0.02562 * 11 9 8 40 40 H 1.09003 * 109.46922 * 60.00635 * 12 11 9 41 41 H 1.08994 * 109.47369 * 300.00007 * 12 11 9 42 42 H 1.08994 * 113.28034 * 41.93499 * 13 12 11 43 43 H 1.09005 * 113.46950 * 332.74525 * 14 13 12 44 44 H 1.08994 * 113.52293 * 202.31009 * 14 13 12 45 45 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 46 46 H 1.09007 * 113.46858 * 87.65629 * 24 15 14 47 47 H 1.08993 * 113.47208 * 218.09965 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 3.9954 0.1612 1.0527 7 6 3.9649 -1.7252 0.0127 8 6 4.0851 -1.4394 2.4918 9 6 5.5921 -1.4345 2.4821 10 8 6.1910 -0.9880 1.5267 11 7 6.2743 -1.9264 3.5353 12 6 7.7393 -1.9222 3.5256 13 6 8.2596 -2.5305 4.8296 14 6 9.7852 -2.6910 4.8845 15 7 9.8591 -1.3168 5.4030 16 6 10.7834 -0.3065 5.3904 17 1 11.7350 -0.4514 4.9008 18 6 10.4968 0.9043 6.0059 19 7 9.3368 1.0810 6.6022 20 14 11.7574 2.2826 5.9880 21 1 11.5488 3.1285 4.7854 22 1 11.6013 3.1121 7.2098 23 1 13.1242 1.7030 5.9546 24 6 8.5061 -1.5073 5.9470 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 3.5942 -1.2917 -0.9163 35 1 5.0513 -1.8031 -0.0312 36 1 3.5343 -2.7174 0.1479 37 1 3.7257 -2.4643 2.5834 38 1 3.7253 -0.8513 3.3361 39 1 5.7954 -2.2839 4.2993 40 1 8.0991 -0.8973 3.4343 41 1 8.0988 -2.5102 2.6812 42 1 7.7056 -3.4150 5.1436 43 1 10.2447 -2.8099 3.9032 44 1 10.1180 -3.4433 5.5995 45 1 9.1367 1.9269 7.0326 46 1 8.4972 -1.9445 6.9455 47 1 7.8780 -0.6199 5.8693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753413839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:39 Heat of formation + Delta-G solvation = -33.897697 kcal Electronic energy + Delta-G solvation = -22451.323472 eV Core-core repulsion = 19248.019443 eV Total energy + Delta-G solvation = -3203.304030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00131 -39.93357 -38.31184 -35.63182 -34.38911 -34.19416 -30.70555 -29.12254 -27.98547 -27.51500 -27.02875 -26.32391 -24.28524 -22.39111 -21.25146 -20.28882 -20.16066 -18.73300 -17.84600 -17.24865 -16.93943 -16.52494 -16.32359 -15.88543 -15.62983 -15.08983 -14.96358 -14.65894 -14.54404 -14.21671 -13.94565 -13.60207 -13.38765 -13.12305 -12.97161 -12.93706 -12.79668 -12.58072 -12.53477 -12.29480 -12.25347 -12.13683 -11.84503 -11.79437 -11.61806 -11.47967 -11.22698 -11.15194 -11.05477 -10.91408 -10.58497 -9.95672 -8.91198 -7.92165 -5.23936 1.42084 1.44780 1.52449 1.76751 2.31672 2.45877 3.30102 3.51035 3.65530 3.81034 3.84515 3.98538 3.99889 4.15866 4.25666 4.38448 4.53994 4.55783 4.64504 4.70997 4.76274 4.76599 4.79628 4.83648 4.88605 4.90136 4.98623 5.01659 5.06285 5.09873 5.12126 5.20865 5.21753 5.24250 5.37148 5.37449 5.47960 5.52503 5.54901 5.62624 5.65260 5.70410 5.95078 6.70222 6.91006 7.40647 7.59735 8.60737 9.25270 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.003163 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.440593 B = 8850.679743 C = 9608.463417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.103 4.103 5 C -0.077 4.077 6 H 0.053 0.947 7 C -0.149 4.149 8 C -0.128 4.128 9 C 0.501 3.499 10 O -0.587 6.587 11 N -0.716 5.716 12 C 0.162 3.838 13 C -0.123 4.123 14 C 0.123 3.877 15 N -0.646 5.646 16 C -0.227 4.227 17 H 0.081 0.919 18 C -0.069 4.069 19 N -0.951 5.951 20 Si 0.975 3.025 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.268 1.268 24 C 0.156 3.844 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.415 0.585 40 H 0.026 0.974 41 H 0.063 0.937 42 H 0.122 0.878 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.247 0.753 46 H 0.024 0.976 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.953 -8.833 -9.369 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.140 4.140 5 C -0.096 4.096 6 H 0.071 0.929 7 C -0.206 4.206 8 C -0.168 4.168 9 C 0.290 3.710 10 O -0.468 6.468 11 N -0.368 5.368 12 C 0.038 3.962 13 C -0.142 4.142 14 C -0.002 4.002 15 N -0.373 5.373 16 C -0.356 4.356 17 H 0.099 0.901 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.804 3.196 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.192 1.192 24 C 0.030 3.970 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.252 0.748 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.140 0.860 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.041 0.959 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.364 -8.213 -9.970 22.451 hybrid contribution 0.998 1.059 0.678 1.605 sum -17.366 -7.154 -9.292 20.954 Atomic orbital electron populations 1.21812 0.94325 1.02121 1.01839 1.21162 0.96211 0.95773 0.98636 1.21916 1.00509 0.96759 1.01750 1.21661 0.92892 1.01409 0.98038 1.20913 0.96106 0.99062 0.93531 0.92856 1.21923 1.01244 0.99495 0.97905 1.21812 0.88538 1.05574 1.00843 1.21511 0.91892 0.76099 0.81533 1.90652 1.72276 1.47855 1.36005 1.45965 1.06736 1.63089 1.21024 1.20616 0.79923 0.99219 0.96448 1.23002 0.97048 0.99320 0.94845 1.22589 0.93307 0.86724 0.97585 1.46010 1.16805 1.10210 1.64227 1.19301 0.95948 0.91188 1.29139 0.90074 1.25601 0.99473 1.00232 1.00867 1.70000 1.23422 1.24730 1.41810 0.85121 0.78812 0.79070 0.76623 1.21671 1.21813 1.19229 1.22126 0.86305 0.95070 0.93494 0.92582 0.92699 0.91986 0.91270 0.93904 0.92559 0.92662 0.90294 0.91399 0.92559 0.93923 0.91742 0.85925 0.87312 0.74846 0.95591 0.91876 0.86044 0.93413 0.92418 0.94431 0.95868 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 71.98 0.66 -1.08 16 2 C -0.10 -1.51 2.78 -10.79 -0.03 -1.54 16 3 C -0.15 -2.67 8.96 71.98 0.64 -2.02 16 4 C -0.10 -1.52 4.15 30.59 0.13 -1.39 16 5 C -0.08 -1.59 1.90 -10.79 -0.02 -1.61 16 6 H 0.05 1.41 6.16 -2.39 -0.01 1.40 16 7 C -0.15 -3.22 8.69 71.98 0.63 -2.59 16 8 C -0.13 -2.47 5.17 29.85 0.15 -2.31 16 9 C 0.50 14.93 7.55 87.66 0.66 15.59 16 10 O -0.59 -23.16 13.97 -3.02 -0.04 -23.21 16 11 N -0.72 -20.28 5.56 -463.04 -2.57 -22.85 16 12 C 0.16 5.82 5.50 86.38 0.47 6.30 16 13 C -0.12 -4.16 4.18 -10.46 -0.04 -4.20 16 14 C 0.12 4.81 8.26 83.18 0.69 5.49 16 15 N -0.65 -33.49 3.62 -738.46 -2.67 -36.16 16 16 C -0.23 -13.16 10.75 84.03 0.90 -12.25 16 17 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 19 N -0.95 -58.60 11.51 21.65 0.25 -58.35 16 20 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 21 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 C 0.16 7.16 6.89 83.18 0.57 7.73 16 25 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 1.10 6.34 -2.39 -0.02 1.09 16 29 H 0.04 0.90 6.46 -2.39 -0.02 0.89 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.14 6.46 -2.38 -0.02 1.12 16 35 H 0.04 1.22 5.95 -2.38 -0.01 1.20 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.41 8.69 8.47 -92.72 -0.79 7.91 16 40 H 0.03 1.23 7.91 -2.39 -0.02 1.21 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.05 1.79 8.12 -2.38 -0.02 1.77 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 46 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.04 1.97 7.09 -2.39 -0.02 1.96 16 Total: -1.00 -74.63 368.09 3.02 -71.61 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.14 Total: 17.05 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.89 Total: 2.54 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -4.99 Total: -117.36 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.04 Total: -23.21 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -74.63 3.02 -71.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753413839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.716 kcal (2) G-P(sol) polarization free energy of solvation -74.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds