Wall clock time and date at job start Tue Mar 31 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46724 * 2 1 4 4 C 1.50700 * 109.47386 * 240.00618 * 2 1 3 5 5 O 1.21281 * 119.99959 * 240.00183 * 4 2 1 6 6 N 1.34775 * 120.00340 * 59.99386 * 4 2 1 7 7 C 1.46497 * 119.99892 * 0.02562 * 6 4 2 8 8 C 1.46502 * 120.00238 * 180.02562 * 6 4 2 9 9 H 1.09003 * 110.63832 * 1.68432 * 8 6 4 10 10 C 1.55145 * 110.87501 * 124.93881 * 8 6 4 11 11 C 1.55128 * 101.49096 * 82.76619 * 10 8 6 12 12 N 1.47424 * 104.71974 * 37.29192 * 11 10 8 13 13 C 1.36937 * 125.64656 * 155.81923 * 12 11 10 14 14 H 1.08000 * 120.00340 * 190.43537 * 13 12 11 15 15 C 1.38813 * 120.00152 * 10.43411 * 13 12 11 16 16 N 1.31616 * 119.99858 * 9.07115 * 15 13 12 17 17 Si 1.86801 * 120.00132 * 189.07272 * 15 13 12 18 18 H 1.48502 * 109.46759 * 265.01263 * 17 15 13 19 19 H 1.48497 * 109.47195 * 25.00938 * 17 15 13 20 20 H 1.48502 * 109.47208 * 145.01632 * 17 15 13 21 21 C 1.47015 * 108.70459 * 335.55597 * 12 11 10 22 22 C 1.52995 * 109.47243 * 119.99996 * 2 1 3 23 23 C 1.52997 * 109.47243 * 179.97438 * 22 2 1 24 24 C 1.52998 * 109.47248 * 300.00225 * 22 2 1 25 25 C 1.53003 * 109.47024 * 60.00223 * 22 2 1 26 26 H 1.08993 * 109.47283 * 299.99900 * 1 2 3 27 27 H 1.09002 * 109.47496 * 60.00214 * 1 2 3 28 28 H 1.09007 * 109.47024 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47820 * 269.99979 * 7 6 4 30 30 H 1.09007 * 109.47250 * 30.00158 * 7 6 4 31 31 H 1.08997 * 109.47414 * 149.99546 * 7 6 4 32 32 H 1.09009 * 111.00372 * 201.00772 * 10 8 6 33 33 H 1.09004 * 111.00213 * 324.85424 * 10 8 6 34 34 H 1.08997 * 110.49574 * 278.45508 * 11 10 8 35 35 H 1.09000 * 110.34742 * 156.06231 * 11 10 8 36 36 H 0.96999 * 120.00575 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.88641 * 120.70159 * 21 12 11 38 38 H 1.08997 * 109.88506 * 241.86659 * 21 12 11 39 39 H 1.09007 * 109.47024 * 60.00472 * 23 22 2 40 40 H 1.09002 * 109.47496 * 179.97438 * 23 22 2 41 41 H 1.08997 * 109.47344 * 300.00599 * 23 22 2 42 42 H 1.09001 * 109.47093 * 59.99748 * 24 22 2 43 43 H 1.09004 * 109.47089 * 179.97438 * 24 22 2 44 44 H 1.08998 * 109.47078 * 300.00216 * 24 22 2 45 45 H 1.09006 * 109.46997 * 59.99909 * 25 22 2 46 46 H 1.08996 * 109.47390 * 179.97438 * 25 22 2 47 47 H 1.09001 * 109.46981 * 300.00047 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 0.8649 0.9415 -2.5890 8 6 2.1947 -0.9406 -3.6508 9 1 2.7787 -1.8190 -3.3759 10 6 1.0171 -1.3336 -4.5813 11 6 0.7816 -0.0110 -5.3570 12 7 2.1307 0.5439 -5.5698 13 6 2.4884 1.4127 -6.5660 14 1 3.5310 1.6319 -6.7429 15 6 1.5108 2.0118 -7.3485 16 7 0.2412 1.8885 -7.0242 17 14 1.9972 2.9930 -8.8618 18 1 2.0950 4.4320 -8.5083 19 1 3.3120 2.5152 -9.3600 20 1 0.9712 2.8119 -9.9200 21 6 3.0272 0.0148 -4.5316 22 6 2.0400 -0.7212 1.2492 23 6 3.5700 -0.7218 1.2489 24 6 1.5300 0.0000 2.4984 25 6 1.5300 -2.1638 1.2492 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.1833 0.6440 -2.6222 30 1 1.0287 1.6004 -1.7361 31 1 1.1227 1.4669 -3.5085 32 1 1.3045 -2.1402 -5.2559 33 1 0.1354 -1.6068 -4.0015 34 1 0.1778 0.6765 -4.7647 35 1 0.2993 -0.2132 -6.3134 36 1 -0.4420 2.3068 -7.5711 37 1 3.8499 -0.5301 -4.9946 38 1 3.4164 0.8331 -3.9257 39 1 3.9337 0.3058 1.2487 40 1 3.9334 -1.2352 2.1391 41 1 3.9329 -1.2358 0.3589 42 1 0.4400 0.0000 2.4984 43 1 1.8930 -0.5142 3.3884 44 1 1.8932 1.0276 2.4984 45 1 1.8934 -2.6776 0.3591 46 1 1.8937 -2.6778 2.1388 47 1 0.4400 -2.1638 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753439066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:24 Heat of formation + Delta-G solvation = -7.221185 kcal Electronic energy + Delta-G solvation = -24278.174689 eV Core-core repulsion = 21076.027439 eV Total energy + Delta-G solvation = -3202.147249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54189 -38.14103 -36.37530 -34.57498 -32.37317 -30.75538 -29.11066 -27.96856 -27.31497 -27.19564 -26.26974 -24.66707 -23.70295 -21.13554 -20.20779 -18.88817 -18.16111 -17.01295 -16.88239 -15.79772 -15.17267 -15.01606 -14.67816 -14.25060 -14.11755 -13.77533 -13.62495 -13.35772 -12.99246 -12.53792 -12.25991 -12.18267 -11.99109 -11.78994 -11.76337 -11.64823 -11.53746 -11.32137 -11.25875 -11.02394 -10.92812 -10.86315 -10.75782 -10.48502 -10.40479 -10.21821 -10.03648 -9.94677 -9.68268 -9.01386 -8.61158 -8.16811 -6.83577 -5.79253 -3.11590 2.90034 3.33858 3.37352 3.43641 3.45408 4.46970 4.57705 4.69572 4.80963 5.13059 5.27360 5.34253 5.37640 5.40634 5.45109 5.49620 5.58919 5.62451 5.70818 5.74310 5.75299 5.80782 5.88351 5.89533 5.95023 5.96974 5.99632 6.14472 6.20347 6.23266 6.28678 6.34099 6.39771 6.53700 6.56978 6.58265 6.66358 6.74554 7.08591 7.44553 7.53477 7.74645 7.81483 8.21782 8.51568 9.15694 9.77094 10.44574 11.33794 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033679 B = 0.004088 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.180846 B = 6846.851082 C = 6956.555882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.518 3.482 5 O -0.544 6.544 6 N -0.592 5.592 7 C 0.068 3.932 8 C 0.126 3.874 9 H 0.099 0.901 10 C -0.156 4.156 11 C 0.166 3.834 12 N -0.602 5.602 13 C -0.229 4.229 14 H 0.075 0.925 15 C -0.005 4.005 16 N -0.918 5.918 17 Si 0.910 3.090 18 H -0.289 1.289 19 H -0.281 1.281 20 H -0.290 1.290 21 C 0.127 3.873 22 C -0.045 4.045 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.154 4.154 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.067 0.933 36 H 0.253 0.747 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 -3.894 15.808 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.120 4.120 3 H 0.110 0.890 4 C 0.307 3.693 5 O -0.423 6.423 6 N -0.323 5.323 7 C -0.075 4.075 8 C 0.023 3.977 9 H 0.117 0.883 10 C -0.196 4.196 11 C 0.041 3.959 12 N -0.329 5.329 13 C -0.357 4.357 14 H 0.093 0.907 15 C -0.202 4.202 16 N -0.566 5.566 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.206 1.206 20 H -0.216 1.216 21 C 0.000 4.000 22 C -0.046 4.046 23 C -0.211 4.211 24 C -0.200 4.200 25 C -0.210 4.210 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.307 -4.272 15.683 16.257 hybrid contribution 0.105 0.780 -0.804 1.125 sum -0.202 -3.492 14.879 15.285 Atomic orbital electron populations 1.22162 0.93286 1.03058 1.03333 1.21309 0.97454 1.00316 0.92959 0.88976 1.20584 0.79907 0.84456 0.84399 1.90512 1.38802 1.26937 1.86043 1.47817 1.50387 1.28748 1.05370 1.22236 0.94029 0.86991 1.04232 1.22083 0.96152 0.95454 0.84044 0.88293 1.23373 0.97090 1.00844 0.98271 1.21654 0.87398 0.88502 0.98335 1.44515 1.05595 1.52588 1.30156 1.19017 0.92385 1.17487 1.06846 0.90720 1.24788 0.95393 0.99927 1.00053 1.69936 0.98875 1.48355 1.39385 0.86142 0.77425 0.79716 0.82716 1.21653 1.20627 1.21639 1.21642 0.93286 0.94861 0.90220 1.20253 0.96045 0.95619 0.92668 1.22114 0.94286 1.01274 1.03392 1.21956 1.01032 1.00015 0.97014 1.22149 1.00082 0.95551 1.03267 0.91566 0.90793 0.91963 0.92529 0.92083 0.87886 0.91145 0.92005 0.94535 0.91489 0.93718 0.95050 0.95564 0.93723 0.93362 0.89590 0.92425 0.92716 0.92851 0.89681 0.93515 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.12 37.16 0.30 -1.41 16 2 C -0.10 -1.20 1.30 -91.78 -0.12 -1.32 16 3 H 0.09 1.07 7.40 -51.93 -0.38 0.68 16 4 C 0.52 8.02 6.49 -10.99 -0.07 7.94 16 5 O -0.54 -9.55 10.71 5.56 0.06 -9.49 16 6 N -0.59 -9.69 2.83 -171.84 -0.49 -10.17 16 7 C 0.07 1.05 6.90 59.85 0.41 1.46 16 8 C 0.13 2.31 3.57 -66.10 -0.24 2.07 16 9 H 0.10 1.81 6.99 -51.93 -0.36 1.45 16 10 C -0.16 -2.92 6.55 -24.47 -0.16 -3.08 16 11 C 0.17 3.78 4.55 -2.41 -0.01 3.77 16 12 N -0.60 -14.76 2.98 -169.94 -0.51 -15.26 16 13 C -0.23 -6.21 10.24 -15.06 -0.15 -6.37 16 14 H 0.07 1.99 7.84 -52.49 -0.41 1.58 16 15 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 16 N -0.92 -25.83 10.68 55.49 0.59 -25.23 16 17 Si 0.91 21.60 29.56 -169.99 -5.03 16.57 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 C 0.13 2.65 6.24 -3.07 -0.02 2.63 16 22 C -0.05 -0.52 0.54 -154.51 -0.08 -0.60 16 23 C -0.15 -1.89 8.18 37.16 0.30 -1.58 16 24 C -0.14 -1.32 8.12 37.16 0.30 -1.02 16 25 C -0.15 -1.84 7.82 37.16 0.29 -1.55 16 26 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 27 H 0.07 0.80 4.53 -51.93 -0.24 0.57 16 28 H 0.06 0.69 6.43 -51.92 -0.33 0.35 16 29 H 0.06 0.82 6.80 -51.93 -0.35 0.47 16 30 H 0.06 0.79 6.01 -51.92 -0.31 0.48 16 31 H 0.10 2.00 5.20 -51.93 -0.27 1.73 16 32 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.86 5.46 -51.93 -0.28 0.58 16 35 H 0.07 1.74 6.95 -51.93 -0.36 1.38 16 36 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 39 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.28 5.51 -51.93 -0.29 0.99 16 42 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 1.24 5.51 -51.93 -0.29 0.95 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.53 6.43 -51.93 -0.33 0.20 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -28.84 337.51 -7.43 -36.27 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.82 Total: 1.51 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 0.66 Total: 0.72 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.40 Total: -50.67 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.06 Total: -9.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.84 -7.43 -36.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753439066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.054 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds