Wall clock time and date at job start Tue Mar 31 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46928 * 2 1 4 4 C 1.50690 * 109.47130 * 119.99811 * 2 1 3 5 5 O 1.21283 * 120.00379 * 111.37398 * 4 2 1 6 6 N 1.34777 * 120.00230 * 291.36917 * 4 2 1 7 7 C 1.46500 * 120.00077 * 183.66616 * 6 4 2 8 8 C 1.46500 * 119.99841 * 3.66939 * 6 4 2 9 9 H 1.08999 * 110.64035 * 359.34328 * 8 6 4 10 10 C 1.55154 * 110.72233 * 122.48068 * 8 6 4 11 11 C 1.54909 * 101.58145 * 154.04225 * 10 8 6 12 12 N 1.47419 * 104.92815 * 322.93634 * 11 10 8 13 13 C 1.36937 * 125.64808 * 204.15154 * 12 11 10 14 14 H 1.07998 * 120.00403 * 160.29263 * 13 12 11 15 15 C 1.38812 * 120.00107 * 340.29340 * 13 12 11 16 16 N 1.31618 * 120.00282 * 155.56941 * 15 13 12 17 17 Si 1.86801 * 119.99878 * 335.56666 * 15 13 12 18 18 H 1.48498 * 109.47160 * 87.11320 * 17 15 13 19 19 H 1.48502 * 109.47043 * 207.11324 * 17 15 13 20 20 H 1.48505 * 109.47292 * 327.10934 * 17 15 13 21 21 C 1.47289 * 108.56146 * 24.15729 * 12 11 10 22 22 C 1.53001 * 109.47159 * 239.99837 * 2 1 3 23 23 C 1.52997 * 109.47303 * 300.00061 * 22 2 1 24 24 C 1.53000 * 109.47119 * 60.00135 * 22 2 1 25 25 C 1.52996 * 109.47118 * 179.97438 * 22 2 1 26 26 H 1.08997 * 109.46914 * 301.07458 * 1 2 3 27 27 H 1.09005 * 109.47113 * 61.07394 * 1 2 3 28 28 H 1.08996 * 109.46803 * 181.07322 * 1 2 3 29 29 H 1.09000 * 109.47033 * 270.56441 * 7 6 4 30 30 H 1.08996 * 109.47242 * 30.57367 * 7 6 4 31 31 H 1.09008 * 109.46611 * 150.57316 * 7 6 4 32 32 H 1.09003 * 111.00318 * 35.97086 * 10 8 6 33 33 H 1.08997 * 111.00867 * 272.11738 * 10 8 6 34 34 H 1.08996 * 110.36481 * 81.83534 * 11 10 8 35 35 H 1.09006 * 110.36732 * 204.04517 * 11 10 8 36 36 H 0.96995 * 120.00234 * 180.02562 * 16 15 13 37 37 H 1.08993 * 109.85646 * 239.50124 * 21 12 11 38 38 H 1.09000 * 110.00270 * 118.42519 * 21 12 11 39 39 H 1.09004 * 109.47305 * 59.99722 * 23 22 2 40 40 H 1.08993 * 109.47219 * 180.02562 * 23 22 2 41 41 H 1.09003 * 109.46892 * 299.99882 * 23 22 2 42 42 H 1.08994 * 109.47576 * 59.99897 * 24 22 2 43 43 H 1.09001 * 109.47275 * 180.02562 * 24 22 2 44 44 H 1.09004 * 109.46745 * 299.99822 * 24 22 2 45 45 H 1.09003 * 109.47039 * 60.00141 * 25 22 2 46 46 H 1.09004 * 109.47170 * 179.97438 * 25 22 2 47 47 H 1.08996 * 109.47637 * 300.00462 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.5954 -1.7795 1.1261 6 7 1.8560 -0.1575 2.4469 7 6 2.4144 -0.8079 3.6349 8 6 1.1059 1.0937 2.5811 9 1 0.7716 1.4478 1.6059 10 6 -0.0991 0.9111 3.5413 11 6 -0.3037 2.3557 4.0618 12 7 1.0569 2.9065 4.1980 13 6 1.4235 3.9316 5.0287 14 1 2.4602 4.0604 5.3026 15 6 0.4626 4.8054 5.5186 16 7 0.6785 5.4596 6.6401 17 14 -1.1370 5.0528 4.5862 18 1 -2.1222 4.0267 5.0122 19 1 -1.6750 6.4062 4.8766 20 1 -0.8855 4.9225 3.1284 21 6 1.9540 2.1697 3.2915 22 6 2.0400 -0.7213 -1.2492 23 6 1.5301 -2.1638 -1.2492 24 6 1.5301 -0.0001 -2.4985 25 6 3.5700 -0.7207 -1.2495 26 1 -0.3633 0.5304 0.8802 27 1 -0.3633 0.4971 -0.8995 28 1 -0.3633 -1.0275 0.0192 29 1 1.6865 -1.5107 4.0403 30 1 3.3238 -1.3433 3.3624 31 1 2.6482 -0.0533 4.3861 32 1 0.1510 0.2334 4.3576 33 1 -0.9794 0.5619 3.0016 34 1 -0.8793 2.9396 3.3438 35 1 -0.8063 2.3428 5.0290 36 1 0.0069 6.0698 6.9827 37 1 2.7508 1.6952 3.8641 38 1 2.3814 2.8505 2.5553 39 1 0.4400 -2.1638 -1.2492 40 1 1.8938 -2.6777 -2.1389 41 1 1.8934 -2.6776 -0.3592 42 1 1.8933 1.0276 -2.4986 43 1 1.8930 -0.5142 -3.3885 44 1 0.4400 -0.0001 -2.4985 45 1 3.9337 -1.2343 -0.3595 46 1 3.9334 -1.2350 -2.1393 47 1 3.9330 0.3070 -1.2497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753439068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:28 Heat of formation + Delta-G solvation = -6.412226 kcal Electronic energy + Delta-G solvation = -24265.291080 eV Core-core repulsion = 21063.178910 eV Total energy + Delta-G solvation = -3202.112170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73770 -38.25887 -36.83283 -34.81688 -32.19516 -31.47911 -29.68165 -28.16475 -27.68695 -27.25956 -26.60170 -24.64267 -23.74117 -21.27315 -20.64984 -19.66396 -18.17348 -17.26838 -16.99506 -15.83540 -15.38088 -15.20201 -14.89646 -14.79997 -14.21542 -13.81465 -13.73845 -13.59664 -13.16597 -13.00365 -12.56287 -12.45626 -12.18626 -12.12980 -11.95851 -11.89788 -11.74900 -11.59543 -11.46559 -11.27077 -11.08379 -11.05102 -11.03343 -10.67292 -10.57697 -10.51124 -10.22157 -10.10568 -9.53907 -9.25268 -8.73202 -8.44375 -7.12217 -6.01737 -3.31985 2.69105 3.07744 3.29925 3.43921 3.45782 4.40375 4.49448 4.52992 4.72240 4.86959 4.99261 5.03606 5.10592 5.20249 5.25283 5.27495 5.33660 5.39719 5.52675 5.57153 5.66502 5.68444 5.69564 5.72493 5.76659 5.81926 5.82931 5.89924 5.91084 5.97832 6.07411 6.10151 6.14380 6.23042 6.39254 6.43234 6.47377 6.49313 6.54482 6.64254 6.72105 7.53949 7.63580 8.24115 8.29300 8.76333 9.61865 10.09648 11.14063 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.004658 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.479734 B = 6010.273740 C = 6401.472299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 H 0.094 0.906 4 C 0.522 3.478 5 O -0.538 6.538 6 N -0.599 5.599 7 C 0.082 3.918 8 C 0.112 3.888 9 H 0.107 0.893 10 C -0.141 4.141 11 C 0.114 3.886 12 N -0.605 5.605 13 C -0.245 4.245 14 H 0.091 0.909 15 C 0.026 3.974 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.285 1.285 19 H -0.301 1.301 20 H -0.275 1.275 21 C 0.124 3.876 22 C -0.045 4.045 23 C -0.159 4.159 24 C -0.144 4.144 25 C -0.150 4.150 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.062 0.938 36 H 0.264 0.736 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 -12.669 -14.818 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.125 4.125 3 H 0.112 0.888 4 C 0.311 3.689 5 O -0.417 6.417 6 N -0.331 5.331 7 C -0.060 4.060 8 C 0.008 3.992 9 H 0.125 0.875 10 C -0.180 4.180 11 C -0.011 4.011 12 N -0.332 5.332 13 C -0.372 4.372 14 H 0.109 0.891 15 C -0.173 4.173 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.212 1.212 19 H -0.229 1.229 20 H -0.201 1.201 21 C -0.003 4.003 22 C -0.046 4.046 23 C -0.215 4.215 24 C -0.202 4.202 25 C -0.207 4.207 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.080 -13.034 -14.671 19.625 hybrid contribution -1.022 0.531 -0.424 1.227 sum -0.941 -12.503 -15.095 19.624 Atomic orbital electron populations 1.22131 0.93059 1.03098 1.03268 1.21372 0.97565 1.00583 0.92953 0.88765 1.20585 0.78683 0.85346 0.84316 1.90521 1.43435 1.21869 1.85864 1.47878 1.54008 1.24313 1.06896 1.21637 0.98826 0.97959 0.87618 1.22538 0.92342 0.83838 1.00484 0.87544 1.23133 0.96996 0.98837 0.99033 1.21908 0.89112 0.90745 0.99381 1.44751 1.03566 1.38802 1.46093 1.18595 0.95889 1.03535 1.19169 0.89108 1.25014 0.97690 0.97538 0.97047 1.69864 1.35884 1.30660 1.18228 0.87003 0.84653 0.76475 0.81141 1.21199 1.22856 1.20110 1.21705 0.93510 0.92373 0.92662 1.20258 0.95906 0.95748 0.92647 1.22262 1.00143 0.95506 1.03636 1.21968 1.01125 1.00146 0.96924 1.22021 0.94355 1.01369 1.02954 0.91184 0.91110 0.91708 0.93000 0.90942 0.90211 0.90461 0.91251 0.95617 0.92004 0.92614 0.94063 0.94678 0.93410 0.93598 0.88949 0.92679 0.92608 0.92354 0.90616 0.93040 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.05 37.16 0.30 -1.32 16 2 C -0.10 -1.19 1.25 -91.77 -0.11 -1.30 16 3 H 0.09 1.07 7.50 -51.93 -0.39 0.68 16 4 C 0.52 7.22 6.35 -10.99 -0.07 7.15 16 5 O -0.54 -8.43 11.07 5.55 0.06 -8.37 16 6 N -0.60 -8.39 2.89 -171.84 -0.50 -8.88 16 7 C 0.08 1.10 9.14 59.85 0.55 1.64 16 8 C 0.11 1.67 2.37 -66.10 -0.16 1.51 16 9 H 0.11 1.45 4.29 -51.93 -0.22 1.23 16 10 C -0.14 -2.19 6.50 -24.58 -0.16 -2.34 16 11 C 0.11 2.32 4.73 -2.53 -0.01 2.30 16 12 N -0.60 -13.88 3.19 -169.86 -0.54 -14.42 16 13 C -0.25 -6.73 10.55 -15.06 -0.16 -6.89 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 15 C 0.03 0.75 5.41 -17.43 -0.09 0.65 16 16 N -0.90 -27.24 13.97 55.49 0.78 -26.47 16 17 Si 0.88 21.74 24.35 -169.99 -4.14 17.60 16 18 H -0.29 -6.78 6.69 56.52 0.38 -6.40 16 19 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 20 H -0.28 -6.67 6.73 56.52 0.38 -6.29 16 21 C 0.12 2.30 6.81 -2.92 -0.02 2.28 16 22 C -0.05 -0.49 0.54 -154.51 -0.08 -0.57 16 23 C -0.16 -1.77 7.82 37.16 0.29 -1.48 16 24 C -0.14 -1.30 8.12 37.16 0.30 -1.00 16 25 C -0.15 -1.70 8.18 37.16 0.30 -1.39 16 26 H 0.07 0.75 4.79 -51.93 -0.25 0.51 16 27 H 0.07 0.62 6.37 -51.93 -0.33 0.29 16 28 H 0.06 0.67 6.49 -51.93 -0.34 0.33 16 29 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 31 H 0.08 1.11 6.28 -51.92 -0.33 0.79 16 32 H 0.08 1.19 7.21 -51.93 -0.37 0.82 16 33 H 0.07 0.92 7.61 -51.93 -0.40 0.52 16 34 H 0.03 0.54 5.60 -51.93 -0.29 0.25 16 35 H 0.06 1.35 6.97 -51.93 -0.36 0.99 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.04 0.77 6.13 -51.93 -0.32 0.45 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.49 6.45 -51.93 -0.34 0.16 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.25 5.21 -51.93 -0.27 0.98 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.49 6.41 -51.93 -0.33 0.15 16 45 H 0.07 1.01 5.84 -51.93 -0.30 0.71 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -30.25 335.77 -6.19 -36.44 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.78 Total: -0.19 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 0.87 Total: -0.76 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.26 Total: -49.77 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.06 Total: -8.37 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.25 -6.19 -36.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753439068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.026 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds