Wall clock time and date at job start Tue Mar 31 2020 05:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47520 * 2 1 4 4 C 1.53003 * 109.47239 * 120.00519 * 2 1 3 5 5 H 1.09007 * 109.46641 * 299.99900 * 4 2 1 6 6 C 1.52994 * 109.47263 * 59.99492 * 4 2 1 7 7 C 1.50700 * 109.47279 * 180.02562 * 4 2 1 8 8 O 1.21278 * 120.00135 * 359.97438 * 7 4 2 9 9 N 1.34776 * 119.99626 * 179.97438 * 7 4 2 10 10 C 1.46503 * 119.99336 * 174.90911 * 9 7 4 11 11 C 1.52994 * 110.02095 * 65.11887 * 10 9 7 12 12 N 1.46497 * 109.47370 * 55.03882 * 11 10 9 13 13 C 1.36932 * 120.00190 * 174.90831 * 12 11 10 14 14 H 1.08000 * 120.00359 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00187 * 180.02562 * 13 12 11 16 16 N 1.31611 * 119.99754 * 359.72611 * 15 13 12 17 17 Si 1.86804 * 119.99996 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47071 * 90.00299 * 17 15 13 19 19 H 1.48508 * 109.46704 * 210.00014 * 17 15 13 20 20 H 1.48498 * 109.47012 * 330.00000 * 17 15 13 21 21 C 1.54273 * 110.06775 * 186.53477 * 10 9 7 22 22 C 1.54892 * 104.19526 * 95.69997 * 21 10 9 23 23 C 1.54886 * 102.75258 * 37.93871 * 22 21 10 24 24 C 1.53879 * 110.03220 * 303.72141 * 10 9 7 25 25 H 1.08997 * 109.47286 * 299.99962 * 1 2 3 26 26 H 1.09005 * 109.46938 * 59.99712 * 1 2 3 27 27 H 1.09003 * 109.46883 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47222 * 240.00063 * 2 1 3 29 29 H 1.08991 * 109.47495 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46806 * 300.00311 * 3 2 1 31 31 H 1.09007 * 109.46301 * 59.99744 * 3 2 1 32 32 H 1.08999 * 109.47144 * 300.00726 * 6 4 2 33 33 H 1.09007 * 109.46959 * 60.00602 * 6 4 2 34 34 H 1.09001 * 109.46780 * 180.02562 * 6 4 2 35 35 H 0.96993 * 120.00337 * 354.90755 * 9 7 4 36 36 H 1.09005 * 109.47009 * 295.03942 * 11 10 9 37 37 H 1.09001 * 109.47519 * 175.04246 * 11 10 9 38 38 H 0.96998 * 120.00072 * 354.91283 * 12 11 10 39 39 H 0.97002 * 120.00460 * 179.97438 * 16 15 13 40 40 H 1.09002 * 110.48167 * 214.37173 * 21 10 9 41 41 H 1.08999 * 110.48691 * 337.01409 * 21 10 9 42 42 H 1.09000 * 110.75395 * 279.62209 * 22 21 10 43 43 H 1.09004 * 110.75333 * 156.25991 * 22 21 10 44 44 H 1.08999 * 110.48611 * 203.38177 * 23 22 21 45 45 H 1.09003 * 110.48315 * 80.73628 * 23 22 21 46 46 H 1.08995 * 110.03300 * 359.95621 * 24 10 9 47 47 H 1.09001 * 110.02611 * 121.38669 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6766 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 3.5470 -0.7208 1.2495 8 8 4.1534 -0.1957 0.3400 9 7 4.2208 -1.3040 2.2606 10 6 5.6815 -1.4022 2.2068 11 6 6.3024 -0.0046 2.2499 12 7 5.8160 0.7096 3.4329 13 6 6.3165 1.9467 3.7398 14 1 7.0697 2.3961 3.1096 15 6 5.8560 2.6232 4.8611 16 7 4.9342 2.0779 5.6261 17 14 6.5383 4.3111 5.2793 18 1 5.7157 5.3554 4.6177 19 1 6.5006 4.5095 6.7506 20 1 7.9411 4.4100 4.8022 21 6 6.1992 -2.2472 3.3892 22 6 6.3530 -3.6713 2.7997 23 6 6.8792 -3.3944 1.3696 24 6 6.1138 -2.1317 0.9227 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8901 32 1 0.4400 -2.1637 1.2491 33 1 1.8933 -2.6776 0.3591 34 1 1.8930 -2.6775 2.1394 35 1 3.7387 -1.6586 3.0239 36 1 6.0212 0.5458 1.3521 37 1 7.3880 -0.0905 2.2983 38 1 5.1393 0.3062 3.9988 39 1 4.6126 2.5504 6.4098 40 1 7.1625 -1.8710 3.7339 41 1 5.4750 -2.2475 4.2038 42 1 5.3901 -4.1810 2.7651 43 1 7.0774 -4.2503 3.3726 44 1 6.6511 -4.2320 0.7104 45 1 7.9522 -3.2035 1.3883 46 1 5.2368 -2.4133 0.3400 47 1 6.7659 -1.4899 0.3303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753509499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:50 Heat of formation + Delta-G solvation = -51.397322 kcal Electronic energy + Delta-G solvation = -24218.961744 eV Core-core repulsion = 21014.898874 eV Total energy + Delta-G solvation = -3204.062870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22392 -38.08440 -35.63629 -34.24187 -33.19338 -31.21637 -30.26605 -28.58588 -27.87040 -26.99207 -24.54717 -24.07013 -22.14179 -21.23781 -20.58556 -19.29909 -18.76930 -17.02573 -16.86517 -15.90584 -15.04799 -14.85727 -14.53861 -14.33803 -14.26503 -13.78360 -13.57748 -13.19062 -13.09359 -12.68162 -12.59253 -12.17263 -12.01619 -11.96425 -11.69128 -11.55309 -11.33427 -11.09205 -10.91060 -10.84681 -10.80589 -10.76231 -10.59905 -10.49881 -10.39275 -10.37017 -10.36039 -9.99009 -9.63005 -9.04019 -8.70127 -8.40604 -6.79386 -5.70145 -2.95660 3.18273 3.47579 3.52903 3.54063 3.63600 4.63658 4.74712 4.79839 4.89203 4.97611 5.02850 5.12164 5.33726 5.46893 5.54287 5.59419 5.60454 5.67174 5.70592 5.74327 5.82579 5.83376 5.90656 5.92978 5.96738 6.01092 6.03027 6.08275 6.13242 6.23486 6.24858 6.33899 6.35663 6.48305 6.54093 6.58271 6.60211 6.66397 6.87131 7.03399 7.25462 7.77481 8.04741 8.49776 8.80138 9.61186 10.20698 10.56705 11.53191 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.006771 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.606538 B = 4134.373035 C = 5785.132879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 C -0.159 4.159 4 C -0.110 4.110 5 H 0.096 0.904 6 C -0.142 4.142 7 C 0.525 3.475 8 O -0.531 6.531 9 N -0.711 5.711 10 C 0.170 3.830 11 C 0.146 3.854 12 N -0.725 5.725 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.017 4.017 16 N -0.936 5.936 17 Si 0.904 3.096 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.283 1.283 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.394 0.606 36 H 0.038 0.962 37 H 0.023 0.977 38 H 0.381 0.619 39 H 0.252 0.748 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 -12.894 -8.580 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C -0.216 4.216 4 C -0.132 4.132 5 H 0.114 0.886 6 C -0.200 4.200 7 C 0.312 3.688 8 O -0.408 6.408 9 N -0.362 5.362 10 C 0.084 3.916 11 C 0.017 3.983 12 N -0.369 5.369 13 C -0.360 4.360 14 H 0.085 0.915 15 C -0.212 4.212 16 N -0.586 5.586 17 Si 0.736 3.264 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.209 1.209 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.154 4.154 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.215 0.785 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.178 -12.369 -9.257 16.295 hybrid contribution -0.179 0.815 0.999 1.301 sum -5.357 -11.555 -8.259 15.180 Atomic orbital electron populations 1.21932 0.95551 1.01374 1.01756 1.20837 0.94566 0.96986 0.96568 1.22068 1.04534 0.94520 1.00520 1.21396 0.92696 0.97956 1.01116 0.88628 1.21804 1.01562 0.94483 1.02120 1.20340 0.89415 0.77106 0.81970 1.90587 1.70102 1.43231 1.36837 1.46067 1.06897 1.60817 1.22407 1.21205 0.79501 0.96317 0.94603 1.21151 0.95358 0.89698 0.92049 1.42190 1.48692 1.18604 1.27403 1.19240 1.16833 0.93647 1.06292 0.91450 1.24664 0.99649 0.98675 0.98192 1.69642 1.32777 1.38517 1.17682 0.86220 0.78386 0.84679 0.77149 1.21904 1.21908 1.20872 1.22584 1.02582 0.93720 0.96643 1.22525 1.00619 0.97019 0.96049 1.22387 0.99937 0.97502 0.96399 1.22390 1.00210 0.95894 0.96900 0.92674 0.92795 0.92693 0.91043 0.89368 0.93664 0.93378 0.91547 0.92445 0.92304 0.77145 0.94453 0.95902 0.78509 0.93780 0.89771 0.91094 0.91889 0.91772 0.92178 0.91671 0.91573 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.84 37.16 0.33 -1.26 16 2 C -0.07 -0.94 2.15 -90.62 -0.19 -1.14 16 3 C -0.16 -2.50 8.87 37.16 0.33 -2.17 16 4 C -0.11 -1.48 2.31 -91.77 -0.21 -1.69 16 5 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 6 C -0.14 -1.46 8.74 37.15 0.32 -1.14 16 7 C 0.53 8.73 5.90 -10.99 -0.06 8.67 16 8 O -0.53 -10.41 10.93 5.56 0.06 -10.35 16 9 N -0.71 -11.19 4.35 -46.57 -0.20 -11.39 16 10 C 0.17 2.82 0.57 -130.70 -0.07 2.74 16 11 C 0.15 3.14 4.64 -4.05 -0.02 3.12 16 12 N -0.73 -18.50 5.27 -59.91 -0.32 -18.82 16 13 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 16 N -0.94 -28.31 13.06 55.49 0.72 -27.59 16 17 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 C -0.12 -1.75 5.75 -25.07 -0.14 -1.89 16 22 C -0.12 -1.47 6.91 -24.74 -0.17 -1.64 16 23 C -0.12 -1.50 6.83 -25.07 -0.17 -1.68 16 24 C -0.11 -1.71 5.22 -25.61 -0.13 -1.84 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 28 H 0.07 0.99 8.10 -51.93 -0.42 0.56 16 29 H 0.09 1.68 5.51 -51.93 -0.29 1.39 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 35 H 0.39 5.51 7.82 -40.82 -0.32 5.20 16 36 H 0.04 0.90 6.56 -51.93 -0.34 0.56 16 37 H 0.02 0.50 8.04 -51.93 -0.42 0.08 16 38 H 0.38 9.98 7.19 -40.82 -0.29 9.69 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.08 1.38 7.78 -51.93 -0.40 0.98 16 41 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.01 6.99 -51.93 -0.36 0.65 16 47 H 0.07 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -31.72 358.18 -8.29 -40.01 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -8.48 Total: 11.96 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -0.45 Total: -7.21 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.21 Total: -57.79 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.06 Total: -10.35 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.72 -8.29 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753509499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.382 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds