Wall clock time and date at job start Tue Mar 31 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47354 * 2 1 4 4 C 1.53003 * 109.46672 * 120.00009 * 2 1 3 5 5 H 1.08998 * 109.47092 * 299.99362 * 4 2 1 6 6 C 1.53006 * 109.46530 * 179.97438 * 4 2 1 7 7 C 1.50700 * 109.47279 * 60.00072 * 4 2 1 8 8 O 1.21278 * 120.00135 * 359.97438 * 7 4 2 9 9 N 1.34776 * 119.99626 * 179.97438 * 7 4 2 10 10 C 1.46503 * 119.99336 * 174.90911 * 9 7 4 11 11 C 1.53000 * 110.01931 * 65.23113 * 10 9 7 12 12 N 1.46502 * 109.47004 * 55.29363 * 11 10 9 13 13 C 1.36932 * 119.99940 * 174.90943 * 12 11 10 14 14 H 1.08001 * 120.00011 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00323 * 180.02562 * 13 12 11 16 16 N 1.31625 * 119.99631 * 359.72089 * 15 13 12 17 17 Si 1.86798 * 120.00296 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47097 * 89.99857 * 17 15 13 19 19 H 1.48503 * 109.46872 * 209.99726 * 17 15 13 20 20 H 1.48501 * 109.47009 * 329.99667 * 17 15 13 21 21 C 1.54269 * 110.06857 * 186.64694 * 10 9 7 22 22 C 1.54898 * 104.19620 * 95.69896 * 21 10 9 23 23 C 1.54888 * 102.74570 * 37.93947 * 22 21 10 24 24 C 1.53870 * 110.03501 * 303.83563 * 10 9 7 25 25 H 1.08999 * 109.47223 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46841 * 300.00475 * 1 2 3 27 27 H 1.09001 * 109.47058 * 59.99636 * 1 2 3 28 28 H 1.08998 * 109.46841 * 239.99525 * 2 1 3 29 29 H 1.08997 * 109.47286 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46938 * 299.99893 * 3 2 1 31 31 H 1.09003 * 109.46883 * 59.99706 * 3 2 1 32 32 H 1.09005 * 109.46907 * 60.00255 * 6 4 2 33 33 H 1.09005 * 109.46869 * 179.97438 * 6 4 2 34 34 H 1.08999 * 109.47249 * 300.00203 * 6 4 2 35 35 H 0.96993 * 120.00337 * 354.90755 * 9 7 4 36 36 H 1.08996 * 109.46900 * 295.29700 * 11 10 9 37 37 H 1.09002 * 109.47023 * 175.29086 * 11 10 9 38 38 H 0.97003 * 120.00226 * 354.90959 * 12 11 10 39 39 H 0.97000 * 120.00037 * 180.02562 * 16 15 13 40 40 H 1.08995 * 110.48610 * 214.37078 * 21 10 9 41 41 H 1.09000 * 110.48819 * 337.01914 * 21 10 9 42 42 H 1.08999 * 110.75319 * 279.62526 * 22 21 10 43 43 H 1.08992 * 110.75541 * 156.25340 * 22 21 10 44 44 H 1.08998 * 110.48487 * 203.38053 * 23 22 21 45 45 H 1.09006 * 110.48735 * 80.74157 * 23 22 21 46 46 H 1.08999 * 110.03222 * 359.95420 * 24 10 9 47 47 H 1.09003 * 110.03074 * 121.38715 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2489 7 6 1.5376 -2.1421 1.2493 8 8 0.8400 -2.5386 0.3399 9 7 1.8636 -2.9720 2.2599 10 6 1.2859 -4.3171 2.3183 11 6 1.7747 -5.1491 1.1310 12 7 3.2395 -5.1564 1.1099 13 6 3.9072 -5.9251 0.1943 14 1 3.3540 -6.5263 -0.5120 15 6 5.2952 -5.9325 0.1746 16 7 5.9695 -5.1963 1.0324 17 14 6.2061 -6.9805 -1.0749 18 1 6.4403 -6.1882 -2.3088 19 1 7.5096 -7.4079 -0.5062 20 1 5.3925 -8.1787 -1.4030 21 6 1.6781 -5.0046 3.6425 22 6 0.4729 -4.7408 4.5790 23 6 -0.7382 -4.8708 3.6222 24 6 -0.2504 -4.2320 2.3055 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9337 0.3058 1.2487 33 1 3.9334 -1.2353 2.1392 34 1 3.9330 -1.2359 0.3589 35 1 2.4806 -2.6789 2.9485 36 1 1.4002 -4.7146 0.2042 37 1 1.4076 -6.1709 1.2277 38 1 3.7365 -4.6167 1.7445 39 1 6.9393 -5.2011 1.0185 40 1 1.8157 -6.0751 3.4903 41 1 2.5840 -4.5568 4.0512 42 1 0.5249 -3.7377 5.0023 43 1 0.4247 -5.4919 5.3674 44 1 -1.5957 -4.3253 4.0161 45 1 -0.9908 -5.9197 3.4668 46 1 -0.5662 -3.1899 2.2566 47 1 -0.6478 -4.7835 1.4534 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753509500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:52 Heat of formation + Delta-G solvation = -51.332877 kcal Electronic energy + Delta-G solvation = -24233.411239 eV Core-core repulsion = 21029.351163 eV Total energy + Delta-G solvation = -3204.060076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22327 -38.08362 -35.63218 -34.24454 -33.19486 -31.18438 -30.24089 -28.57553 -27.85814 -27.05198 -24.49721 -24.04703 -22.13995 -21.26507 -20.56090 -19.30834 -18.77073 -17.03590 -16.85192 -15.91301 -15.05350 -14.76632 -14.50184 -14.38468 -14.30463 -13.81618 -13.51938 -13.14708 -13.05901 -12.68338 -12.54585 -12.19774 -12.04618 -11.87579 -11.70310 -11.50887 -11.27968 -11.10097 -10.90970 -10.84715 -10.81397 -10.78441 -10.61941 -10.52747 -10.40070 -10.37801 -10.32816 -9.98900 -9.63301 -9.03794 -8.70808 -8.40234 -6.79061 -5.70062 -2.95464 3.17480 3.47496 3.52885 3.54028 3.64462 4.63661 4.75133 4.81999 4.89392 4.99937 5.05755 5.12691 5.40378 5.52013 5.58531 5.60019 5.63030 5.67999 5.70552 5.75542 5.76948 5.83263 5.96043 5.96564 5.98985 6.01579 6.03823 6.07583 6.13424 6.24757 6.28435 6.34469 6.46344 6.47719 6.54005 6.58030 6.59501 6.64939 6.71054 7.02433 7.25109 7.77569 8.04541 8.49887 8.79794 9.61332 10.20802 10.57008 11.53192 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.006659 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.056118 B = 4203.652448 C = 5777.374498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.075 4.075 3 C -0.148 4.148 4 C -0.105 4.105 5 H 0.087 0.913 6 C -0.145 4.145 7 C 0.524 3.476 8 O -0.531 6.531 9 N -0.711 5.711 10 C 0.169 3.831 11 C 0.146 3.854 12 N -0.725 5.725 13 C -0.228 4.228 14 H 0.067 0.933 15 C -0.016 4.016 16 N -0.936 5.936 17 Si 0.904 3.096 18 H -0.292 1.292 19 H -0.293 1.293 20 H -0.283 1.283 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.115 4.115 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.038 0.962 37 H 0.023 0.977 38 H 0.382 0.618 39 H 0.252 0.748 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.931 9.973 6.659 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.094 4.094 3 C -0.205 4.205 4 C -0.126 4.126 5 H 0.105 0.895 6 C -0.202 4.202 7 C 0.311 3.689 8 O -0.408 6.408 9 N -0.362 5.362 10 C 0.083 3.917 11 C 0.017 3.983 12 N -0.369 5.369 13 C -0.360 4.360 14 H 0.085 0.915 15 C -0.212 4.212 16 N -0.586 5.586 17 Si 0.736 3.264 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.209 1.209 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.154 4.154 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.229 0.771 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.215 0.785 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.423 9.558 5.869 16.009 hybrid contribution 1.204 -0.240 -0.169 1.239 sum -10.220 9.317 5.700 14.958 Atomic orbital electron populations 1.22063 0.95036 1.04063 1.00216 1.20872 0.96188 0.95004 0.97341 1.21918 1.01225 0.96037 1.01358 1.21371 0.97691 0.93380 1.00195 0.89463 1.21814 0.92664 1.02161 1.03590 1.20382 0.79954 0.87192 0.81405 1.90585 1.38491 1.76917 1.34772 1.46076 1.48184 1.14302 1.27664 1.21208 0.92163 0.81946 0.96340 1.21149 0.86536 0.95364 0.95202 1.42187 0.99247 1.54692 1.40733 1.19240 0.89163 1.18337 1.09251 0.91477 1.24659 0.96247 1.00727 0.99533 1.69648 1.06066 1.44066 1.38795 0.86222 0.79297 0.79956 0.80970 1.21925 1.21917 1.20891 1.22583 0.97631 1.01913 0.93403 1.22527 0.95134 1.01072 0.97504 1.22387 0.97511 1.00729 0.95603 1.22391 0.94332 1.01246 0.97448 0.89659 0.93986 0.93499 0.90475 0.92331 0.92819 0.93018 0.91863 0.92059 0.91393 0.77128 0.94451 0.95908 0.78486 0.93796 0.89755 0.91101 0.91892 0.91758 0.92169 0.91660 0.91581 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.87 37.16 0.33 -1.71 16 2 C -0.08 -1.00 2.15 -90.62 -0.19 -1.19 16 3 C -0.15 -1.58 8.84 37.16 0.33 -1.25 16 4 C -0.10 -1.41 2.33 -91.77 -0.21 -1.62 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.14 -1.99 8.73 37.16 0.32 -1.66 16 7 C 0.52 8.71 5.90 -10.99 -0.06 8.65 16 8 O -0.53 -10.40 10.92 5.56 0.06 -10.33 16 9 N -0.71 -11.21 4.43 -46.57 -0.21 -11.41 16 10 C 0.17 2.82 0.57 -130.70 -0.07 2.74 16 11 C 0.15 3.14 4.64 -4.04 -0.02 3.12 16 12 N -0.72 -18.43 5.27 -59.91 -0.32 -18.75 16 13 C -0.23 -6.55 9.99 -15.06 -0.15 -6.70 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 16 N -0.94 -28.11 13.06 55.49 0.72 -27.38 16 17 Si 0.90 22.95 29.55 -169.99 -5.02 17.93 16 18 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 C -0.12 -1.75 5.74 -25.07 -0.14 -1.90 16 22 C -0.12 -1.48 6.91 -24.73 -0.17 -1.65 16 23 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 24 C -0.12 -1.71 5.22 -25.62 -0.13 -1.85 16 25 H 0.08 1.33 5.51 -51.93 -0.29 1.04 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 33 H 0.06 0.83 7.46 -51.93 -0.39 0.44 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.39 5.53 7.51 -40.82 -0.31 5.22 16 36 H 0.04 0.90 6.56 -51.93 -0.34 0.56 16 37 H 0.02 0.50 8.05 -51.93 -0.42 0.08 16 38 H 0.38 9.92 7.19 -40.82 -0.29 9.63 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.08 1.39 7.79 -51.93 -0.40 0.98 16 41 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.00 6.99 -51.93 -0.36 0.64 16 47 H 0.07 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -31.50 357.72 -8.28 -39.78 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -8.46 Total: 12.06 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.45 Total: -7.28 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.20 Total: -57.54 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.06 Total: -10.33 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.50 -8.28 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753509500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.551 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds