Wall clock time and date at job start Tue Mar 31 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99608 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00658 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.46570 * 60.00093 * 18 16 15 20 20 C 1.52995 * 109.47173 * 300.00961 * 18 16 15 21 21 C 1.52993 * 109.47630 * 180.02562 * 18 16 15 22 22 C 1.54267 * 110.03514 * 297.17115 * 21 18 16 23 23 C 1.54887 * 104.19591 * 217.10035 * 22 21 18 24 24 C 1.54887 * 102.74653 * 37.94685 * 23 22 21 25 25 C 1.53871 * 110.03527 * 180.02562 * 21 18 16 26 26 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 28 28 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 29 29 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 30 30 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 34 34 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 35 35 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 36 36 H 1.08996 * 109.47085 * 299.99014 * 20 18 16 37 37 H 1.09001 * 109.47384 * 59.99609 * 20 18 16 38 38 H 1.09006 * 109.46994 * 179.97438 * 20 18 16 39 39 H 1.09000 * 110.01534 * 58.61323 * 21 18 16 40 40 H 1.08996 * 110.48255 * 335.78453 * 22 21 18 41 41 H 1.09006 * 110.48570 * 98.42346 * 22 21 18 42 42 H 1.08996 * 110.75774 * 279.62544 * 23 22 21 43 43 H 1.09001 * 110.91238 * 156.32915 * 23 22 21 44 44 H 1.09009 * 110.48639 * 203.37822 * 24 23 22 45 45 H 1.08996 * 110.60434 * 80.78693 * 24 23 22 46 46 H 1.08999 * 110.03281 * 238.57158 * 25 21 18 47 47 H 1.08999 * 110.02971 * 359.95438 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 2.8842 -1.5863 -6.3775 12 1 0.9025 -0.5532 -7.3180 13 1 2.9751 0.6988 -7.1851 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6256 -1.4434 3.7793 18 6 1.5975 0.3653 4.8933 19 1 0.5112 0.4443 4.9368 20 6 2.2084 1.7665 4.8287 21 6 2.1074 -0.3558 6.1425 22 6 1.4450 -1.7442 6.2587 23 6 1.2200 -1.9317 7.7796 24 6 0.8161 -0.5100 8.2431 25 6 1.7071 0.4286 7.4043 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7199 -1.2950 30 1 3.1263 -0.7995 -1.2055 31 1 1.1488 0.8593 -2.3518 32 1 0.7072 1.9230 -5.4823 33 1 1.6054 -1.7197 1.2953 34 1 3.1263 -0.7993 1.2057 35 1 1.1483 0.8592 2.3518 36 1 3.2947 1.6876 4.7852 37 1 1.8454 2.2806 3.9387 38 1 1.9201 2.3299 5.7163 39 1 3.1913 -0.4612 6.0962 40 1 0.4933 -1.7584 5.7276 41 1 2.1096 -2.5174 5.8732 42 1 2.1397 -2.2511 8.2697 43 1 0.4159 -2.6427 7.9692 44 1 1.0218 -0.3825 9.3060 45 1 -0.2372 -0.3233 8.0342 46 1 2.5967 0.7035 7.9710 47 1 1.1502 1.3235 7.1266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753638057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:41 Heat of formation + Delta-G solvation = -83.796852 kcal Electronic energy + Delta-G solvation = -22359.511944 eV Core-core repulsion = 19154.044124 eV Total energy + Delta-G solvation = -3205.467819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24421 -39.05455 -38.04440 -35.94500 -34.59146 -33.71758 -31.81387 -29.61700 -28.51564 -27.76116 -27.11032 -25.08166 -23.94032 -21.60294 -21.48843 -21.17123 -20.17137 -19.21599 -18.14323 -17.31580 -16.70489 -16.52212 -16.26183 -16.00526 -15.52410 -15.45047 -15.09814 -14.53246 -14.33990 -14.18427 -14.07321 -13.78964 -13.59135 -13.50499 -13.11279 -12.96902 -12.83600 -12.37157 -12.19853 -12.14196 -12.05319 -11.98217 -11.83078 -11.78719 -11.69623 -11.66563 -11.51947 -11.42577 -11.21821 -10.96615 -10.62587 -10.04328 -9.00606 -7.96725 -5.25005 1.47196 1.47468 1.57836 1.71004 2.22592 2.56061 3.37035 3.59720 3.71838 3.72985 3.76579 3.95183 3.99699 4.08123 4.25855 4.26910 4.33394 4.49693 4.54044 4.60934 4.70095 4.70870 4.76922 4.79201 4.84338 4.89570 4.92329 4.93389 5.03586 5.06445 5.11411 5.13387 5.17324 5.28075 5.32811 5.33867 5.41730 5.45230 5.49175 5.52024 5.53280 5.58752 6.26338 6.60937 7.31260 7.33059 8.07805 8.32501 9.26930 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046804 B = 0.002511 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.097674 B =11147.178400 C =11356.810492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 H 0.078 0.922 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.073 0.927 8 C -0.075 4.075 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.139 3.861 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.580 6.580 18 C -0.098 4.098 19 H 0.116 0.884 20 C -0.145 4.145 21 C -0.071 4.071 22 C -0.114 4.114 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.117 4.117 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.020 0.980 30 H 0.018 0.982 31 H 0.377 0.623 32 H 0.252 0.748 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.413 0.587 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 0.617 27.497 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.097 0.903 4 C 0.030 3.970 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.014 3.986 15 N -0.369 5.369 16 C 0.297 3.703 17 O -0.460 6.460 18 C -0.119 4.119 19 H 0.134 0.866 20 C -0.202 4.202 21 C -0.090 4.090 22 C -0.152 4.152 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.155 4.155 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.210 0.790 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.250 0.750 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.257 -0.247 27.452 27.482 hybrid contribution 0.016 0.139 -1.544 1.550 sum -1.240 -0.108 25.908 25.938 Atomic orbital electron populations 1.21716 0.93831 1.01857 1.01777 1.21327 0.97184 1.00003 0.92736 0.90332 1.20721 0.96428 0.94133 0.85764 1.42514 1.66669 1.27909 1.01347 1.19657 1.27791 1.05227 0.85093 0.90935 1.25549 1.01737 0.97893 1.01525 1.69809 1.45171 1.17764 1.29081 0.85079 0.77126 0.77591 0.79992 1.19299 1.21899 1.21909 1.21073 0.99216 0.94983 0.83301 1.45976 1.57649 1.28066 1.05194 1.21313 0.78340 0.85216 0.85424 1.90674 1.41635 1.26446 1.87244 1.21507 1.03230 0.96178 0.90941 0.86569 1.21873 1.00722 0.93376 1.04232 1.21546 0.99515 0.94532 0.93395 1.22333 0.99575 0.96761 0.96498 1.22534 1.01176 0.97868 0.94921 1.22360 0.99869 0.93956 0.99778 1.22258 1.00116 0.98588 0.94505 0.93101 0.90490 0.93858 0.96209 0.96421 0.79044 0.93926 0.92189 0.92584 0.75042 0.93235 0.91091 0.89058 0.92517 0.92541 0.93611 0.91882 0.91397 0.90846 0.91064 0.91312 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.94 71.98 0.64 -3.16 16 2 C -0.09 -2.81 2.46 -10.79 -0.03 -2.83 16 3 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 4 C 0.16 6.27 5.65 86.38 0.49 6.75 16 5 N -0.74 -37.54 5.33 -343.46 -1.83 -39.38 16 6 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 7 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 8 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 9 N -0.97 -58.88 13.06 21.65 0.28 -58.59 16 10 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 14 C 0.14 3.76 5.06 86.38 0.44 4.20 16 15 N -0.72 -15.48 5.18 -463.08 -2.40 -17.87 16 16 C 0.51 12.03 6.90 87.66 0.61 12.64 16 17 O -0.58 -18.70 14.54 -3.03 -0.04 -18.75 16 18 C -0.10 -1.52 2.02 -11.54 -0.02 -1.55 16 19 H 0.12 1.38 8.12 -2.39 -0.02 1.37 16 20 C -0.14 -1.72 8.83 71.98 0.64 -1.08 16 21 C -0.07 -1.21 2.11 -10.07 -0.02 -1.23 16 22 C -0.11 -2.23 5.18 31.67 0.16 -2.07 16 23 C -0.13 -1.90 6.91 31.88 0.22 -1.68 16 24 C -0.12 -1.38 6.83 31.65 0.22 -1.16 16 25 C -0.12 -1.35 5.91 31.30 0.18 -1.16 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.63 7.18 -2.39 -0.02 1.61 16 28 H 0.04 1.47 7.18 -2.39 -0.02 1.45 16 29 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.38 19.92 6.85 -92.71 -0.64 19.29 16 32 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.41 6.69 7.07 -92.71 -0.66 6.03 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.72 7.57 -2.39 -0.02 0.70 16 38 H 0.09 0.72 6.48 -2.38 -0.02 0.70 16 39 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.06 1.12 7.84 -2.39 -0.02 1.10 16 41 H 0.04 1.15 7.45 -2.38 -0.02 1.13 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.08 0.71 6.33 -2.39 -0.02 0.69 16 Total: -1.00 -69.08 365.26 2.51 -66.56 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.35 Total: 28.81 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 4.83 Total: -9.20 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -3.94 Total: -115.84 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.04 Total: -18.75 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -69.08 2.51 -66.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.233 kcal (2) G-P(sol) polarization free energy of solvation -69.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds