Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47820 * 2 1 4 4 C 1.53006 * 109.47536 * 120.00629 * 2 1 3 5 5 H 1.08994 * 109.47567 * 184.99751 * 4 2 1 6 6 C 1.52995 * 109.47104 * 64.99279 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21287 * 120.00246 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.00338 * 180.02562 * 8 7 6 11 11 C 1.52995 * 109.47276 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46965 * 54.99994 * 11 10 8 13 13 C 1.52994 * 109.47322 * 295.00010 * 11 10 8 14 14 C 1.52999 * 109.47259 * 174.99909 * 11 10 8 15 15 C 1.53007 * 117.49898 * 248.62521 * 14 11 10 16 16 C 1.52996 * 117.50234 * 180.02562 * 14 11 10 17 17 N 1.46505 * 109.46692 * 304.99674 * 4 2 1 18 18 C 1.36931 * 119.99788 * 274.99780 * 17 4 2 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 4 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 4 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 H 1.09001 * 109.46343 * 299.99933 * 1 2 3 27 27 H 1.09001 * 109.46730 * 59.99102 * 1 2 3 28 28 H 1.08996 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47036 * 239.99912 * 2 1 3 30 30 H 1.08998 * 109.47562 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47396 * 300.00737 * 3 2 1 32 32 H 1.09005 * 109.46888 * 59.99822 * 3 2 1 33 33 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 34 34 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 35 35 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 36 36 H 1.09005 * 109.46830 * 300.00121 * 10 8 7 37 37 H 1.09002 * 109.46892 * 59.99693 * 10 8 7 38 38 H 1.08998 * 109.47463 * 179.97438 * 13 11 10 39 39 H 1.08995 * 109.47310 * 299.99747 * 13 11 10 40 40 H 1.09001 * 109.47190 * 60.00039 * 13 11 10 41 41 H 1.08996 * 115.54589 * 34.32739 * 14 11 10 42 42 H 1.08992 * 117.49899 * 359.97438 * 15 14 11 43 43 H 1.09001 * 117.49555 * 145.02125 * 15 14 11 44 44 H 1.09001 * 117.50074 * 214.98491 * 16 14 11 45 45 H 1.09003 * 117.49873 * 359.97133 * 16 14 11 46 46 H 0.97000 * 119.99792 * 94.99575 * 17 4 2 47 47 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 3.1264 -0.6445 1.2951 6 6 1.6353 -2.1955 1.1878 7 7 2.0184 -2.8596 2.4362 8 6 1.7596 -4.1709 2.6090 9 8 1.2091 -4.8012 1.7312 10 6 2.1532 -4.8538 3.8935 11 6 1.7485 -6.3280 3.8321 12 1 2.1835 -6.7875 2.9445 13 6 0.2237 -6.4360 3.7671 14 6 2.2580 -7.0492 5.0815 15 6 3.3764 -8.0770 4.8973 16 6 1.9532 -8.5431 5.2086 17 7 1.4560 -0.1038 2.4424 18 6 2.0444 0.9999 2.9997 19 1 2.9387 1.4155 2.5594 20 6 1.4876 1.5885 4.1269 21 7 0.3974 1.0825 4.6631 22 14 2.2859 3.0989 4.8827 23 1 3.4915 3.4668 4.0975 24 1 1.3215 4.2280 4.8682 25 1 2.6796 2.8021 6.2834 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4423 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 0.5563 -2.2707 1.0526 34 1 2.1408 -2.6767 0.3505 35 1 2.4584 -2.3554 3.1385 36 1 3.2321 -4.7782 4.0293 37 1 1.6470 -4.3729 4.7306 38 1 -0.0646 -7.4862 3.7229 39 1 -0.2112 -5.9765 4.6546 40 1 -0.1393 -5.9222 2.8770 41 1 2.2641 -6.4570 5.9965 42 1 3.7488 -8.2397 3.8859 43 1 4.1185 -8.1610 5.6912 44 1 1.7587 -8.9339 6.2074 45 1 1.3893 -9.0121 4.4023 46 1 0.6525 -0.4768 2.8376 47 1 0.0086 1.4936 5.4510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753845632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = -29.800491 kcal Electronic energy + Delta-G solvation = -22929.492940 eV Core-core repulsion = 19726.366578 eV Total energy + Delta-G solvation = -3203.126361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65620 -37.99207 -37.16079 -33.83248 -33.05259 -32.91058 -30.24952 -28.63498 -27.02642 -26.30298 -24.07061 -23.33053 -22.36841 -21.92017 -20.08834 -19.67445 -18.70831 -17.34194 -16.58713 -16.04779 -15.35877 -15.21800 -14.93356 -14.43194 -14.25317 -13.75167 -13.50743 -13.35478 -13.02500 -12.92938 -12.83058 -12.22911 -12.17174 -11.74637 -11.67543 -11.31523 -11.23809 -11.10256 -10.97768 -10.97291 -10.80613 -10.72358 -10.52953 -10.35908 -10.28787 -10.11330 -9.95849 -9.89388 -9.49208 -9.33257 -8.94205 -8.52611 -7.03224 -5.83308 -3.11781 3.03379 3.37696 3.44610 3.46457 3.60016 3.75019 4.52776 4.60030 4.77214 4.84585 4.98316 5.23870 5.33111 5.40732 5.43090 5.49018 5.50877 5.53936 5.62832 5.74027 5.77309 5.80934 5.85366 5.91165 5.92074 5.97348 6.00955 6.12622 6.21319 6.25118 6.33896 6.43092 6.43847 6.52362 6.57850 6.65808 6.73035 6.83269 7.00746 7.08106 7.29459 7.65868 8.01663 8.34148 8.66269 9.46495 10.01721 10.38009 11.38538 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.004040 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.137144 B = 6928.724333 C = 8047.761024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.168 3.832 5 H 0.052 0.948 6 C 0.112 3.888 7 N -0.713 5.713 8 C 0.510 3.490 9 O -0.555 6.555 10 C -0.136 4.136 11 C -0.041 4.041 12 H 0.075 0.925 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.183 4.183 16 C -0.179 4.179 17 N -0.717 5.717 18 C -0.235 4.235 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.901 3.099 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.293 1.293 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.410 0.590 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.385 0.615 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -12.947 -2.054 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.070 0.930 6 C -0.012 4.012 7 N -0.365 5.365 8 C 0.296 3.704 9 O -0.434 6.434 10 C -0.176 4.176 11 C -0.060 4.060 12 H 0.094 0.906 13 C -0.207 4.207 14 C -0.165 4.165 15 C -0.220 4.220 16 C -0.216 4.216 17 N -0.359 5.359 18 C -0.366 4.366 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.732 3.268 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.220 0.780 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.749 -13.228 -2.623 13.996 hybrid contribution 0.345 1.130 0.970 1.529 sum 4.094 -12.097 -1.653 12.878 Atomic orbital electron populations 1.21768 0.95701 1.00614 1.01672 1.21613 0.96179 0.97127 0.97973 1.21841 0.99529 0.96430 1.02108 1.20544 0.96784 0.88552 0.88399 0.92981 1.21699 1.00448 0.93374 0.85685 1.46032 1.60958 1.09513 1.19968 1.20602 0.78651 0.82140 0.88962 1.90619 1.43202 1.65030 1.44581 1.21702 1.03069 0.96189 0.96616 1.20419 0.96801 0.93005 0.95787 0.90630 1.21919 0.94518 1.01433 1.02844 1.22392 1.02777 0.91425 0.99930 1.23013 0.91801 1.04490 1.02668 1.22901 0.98879 0.97244 1.02614 1.42427 1.31884 1.33172 1.28443 1.19248 1.06946 1.03720 1.06720 0.90915 1.24707 0.97789 0.99461 0.98725 1.69667 1.21906 1.42139 1.23988 0.86217 0.78410 0.83121 0.79028 1.20594 1.21989 1.21997 0.90989 0.94454 0.93802 0.93320 0.94176 0.94865 0.89602 0.91586 0.92205 0.75419 0.89128 0.88713 0.93239 0.93214 0.90493 0.87753 0.88881 0.89073 0.89077 0.88828 0.78036 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.74 37.16 0.32 -2.09 16 2 C -0.11 -1.82 2.74 -90.62 -0.25 -2.07 16 3 C -0.14 -2.50 8.46 37.16 0.31 -2.18 16 4 C 0.17 3.03 2.29 -67.93 -0.16 2.88 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.90 5.10 -4.04 -0.02 1.88 16 7 N -0.71 -11.60 5.39 -60.29 -0.32 -11.93 16 8 C 0.51 8.13 7.55 -10.99 -0.08 8.05 16 9 O -0.55 -10.31 13.96 5.55 0.08 -10.23 16 10 C -0.14 -1.71 5.16 -27.88 -0.14 -1.85 16 11 C -0.04 -0.50 2.19 -90.63 -0.20 -0.69 16 12 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 13 C -0.15 -1.92 8.77 37.15 0.33 -1.59 16 14 C -0.15 -1.49 5.15 -90.62 -0.47 -1.96 16 15 C -0.18 -1.67 10.17 -26.75 -0.27 -1.94 16 16 C -0.18 -1.65 9.73 -26.76 -0.26 -1.91 16 17 N -0.72 -15.73 3.53 -53.42 -0.19 -15.92 16 18 C -0.24 -5.80 7.75 -15.06 -0.12 -5.92 16 19 H 0.07 1.77 7.32 -52.49 -0.38 1.39 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.16 13.06 55.49 0.72 -25.44 16 22 Si 0.90 21.18 29.55 -169.99 -5.02 16.15 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 H 0.07 1.45 7.47 -51.93 -0.39 1.06 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.72 6.46 -51.93 -0.34 0.38 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.78 5.99 -51.93 -0.31 1.47 16 33 H 0.07 1.19 6.35 -51.93 -0.33 0.87 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.41 6.72 8.14 -40.82 -0.33 6.39 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.57 7.29 -51.93 -0.38 0.19 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.18 5.95 -51.93 -0.31 0.87 16 41 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 42 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.86 7.61 -51.93 -0.40 0.47 16 46 H 0.39 9.32 7.80 -40.82 -0.32 9.00 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -27.59 368.18 -8.79 -36.38 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -8.50 Total: 15.21 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.10 Total: -9.78 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.21 Total: -53.28 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.59 -8.79 -36.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753845632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.580 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds