Wall clock time and date at job start Tue Mar 31 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 C 1.52993 * 109.47476 * 120.00396 * 2 1 3 5 5 H 1.09000 * 109.46925 * 299.99787 * 4 2 1 6 6 C 1.52997 * 109.47347 * 59.99826 * 4 2 1 7 7 N 1.46502 * 109.47303 * 175.00398 * 6 4 2 8 8 C 1.34778 * 119.99848 * 179.97438 * 7 6 4 9 9 O 1.21279 * 120.00192 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99809 * 179.97438 * 8 7 6 11 11 C 1.52992 * 109.46966 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47103 * 304.99703 * 11 10 8 13 13 C 1.52997 * 109.47482 * 64.99950 * 11 10 8 14 14 C 1.52999 * 109.46961 * 185.00310 * 11 10 8 15 15 C 1.53003 * 117.50265 * 128.62282 * 14 11 10 16 16 C 1.52998 * 117.50427 * 59.99419 * 14 11 10 17 17 N 1.46496 * 109.47558 * 180.02562 * 4 2 1 18 18 C 1.36941 * 120.00340 * 84.99578 * 17 4 2 19 19 H 1.08004 * 119.99649 * 0.02562 * 18 17 4 20 20 C 1.38815 * 119.99905 * 180.02562 * 18 17 4 21 21 N 1.31617 * 119.99469 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00043 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47037 * 90.00773 * 22 20 18 24 24 H 1.48507 * 109.46626 * 210.00490 * 22 20 18 25 25 H 1.48493 * 109.47325 * 330.00217 * 22 20 18 26 26 H 1.09000 * 109.46870 * 299.99783 * 1 2 3 27 27 H 1.09001 * 109.47372 * 59.99633 * 1 2 3 28 28 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46870 * 240.00217 * 2 1 3 30 30 H 1.08992 * 109.47399 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47194 * 300.00476 * 3 2 1 32 32 H 1.09004 * 109.46724 * 59.99817 * 3 2 1 33 33 H 1.09001 * 109.47096 * 55.00211 * 6 4 2 34 34 H 1.09001 * 109.47072 * 294.99829 * 6 4 2 35 35 H 0.97000 * 119.99673 * 359.97438 * 7 6 4 36 36 H 1.08996 * 109.46741 * 59.99783 * 10 8 7 37 37 H 1.09001 * 109.46664 * 300.00360 * 10 8 7 38 38 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 40 40 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 41 41 H 1.09005 * 115.54744 * 274.32371 * 14 11 10 42 42 H 1.08999 * 117.49725 * 359.97438 * 15 14 11 43 43 H 1.08994 * 117.50100 * 145.02000 * 15 14 11 44 44 H 1.08999 * 117.50259 * 214.97964 * 16 14 11 45 45 H 1.09005 * 117.49497 * 0.02562 * 16 14 11 46 46 H 0.97005 * 119.99981 * 264.99977 * 17 4 2 47 47 H 0.97000 * 119.99881 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1391 6 6 1.5301 -2.1638 1.2491 7 7 2.1142 -2.8883 2.3805 8 6 1.8053 -4.1845 2.5825 9 8 1.0441 -4.7513 1.8274 10 6 2.4067 -4.9300 3.7461 11 6 1.8966 -6.3724 3.7461 12 1 0.8066 -6.3723 3.7466 13 6 2.4060 -7.0936 2.4965 14 6 2.4071 -7.0938 4.9950 15 6 1.3778 -7.8267 5.8578 16 6 2.0035 -6.5222 6.3556 17 7 3.5050 -0.7208 1.2494 18 6 4.1893 0.3542 1.7509 19 1 3.6489 1.2015 2.1466 20 6 5.5774 0.3548 1.7507 21 7 6.2350 1.3883 2.2323 22 14 6.5120 -1.1109 1.0670 23 1 6.7593 -0.9077 -0.3831 24 1 7.8097 -1.2452 1.7765 25 1 5.7101 -2.3451 1.2642 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.8184 -2.6511 0.3177 34 1 0.4438 -2.1651 1.3388 35 1 2.7233 -2.4350 2.9842 36 1 2.1192 -4.4425 4.6775 37 1 3.4930 -4.9290 3.6557 38 1 3.4960 -7.0936 2.4960 39 1 2.0423 -6.5796 1.6068 40 1 2.0429 -8.1214 2.4968 41 1 3.3994 -7.5368 4.9095 42 1 0.3370 -7.7946 5.5359 43 1 1.6928 -8.7521 6.3401 44 1 2.7301 -6.5894 7.1654 45 1 1.3740 -5.6324 6.3610 46 1 3.9904 -1.4819 0.8943 47 1 7.2050 1.3886 2.2325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753845633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:57 Heat of formation + Delta-G solvation = -27.247182 kcal Electronic energy + Delta-G solvation = -22993.990434 eV Core-core repulsion = 19790.974792 eV Total energy + Delta-G solvation = -3203.015642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80822 -38.07362 -37.24212 -33.95296 -33.17478 -33.11084 -30.87690 -28.98693 -27.20172 -26.22416 -23.94083 -23.11742 -22.49166 -21.68423 -20.36871 -19.76761 -19.34961 -17.69950 -16.69058 -16.04883 -15.49760 -15.46608 -14.96165 -14.72840 -14.09924 -13.86435 -13.65533 -13.43771 -13.07519 -12.92831 -12.80056 -12.49660 -12.17898 -11.99382 -11.73559 -11.65840 -11.40192 -11.33571 -11.15234 -11.10321 -10.90510 -10.86138 -10.63129 -10.33362 -10.29802 -10.16154 -10.09023 -10.00232 -9.52522 -9.45502 -8.96369 -8.68857 -7.36264 -5.84441 -3.20424 2.89473 3.30936 3.35536 3.40519 3.44106 3.70784 4.50395 4.51953 4.71616 4.77501 4.92601 5.10035 5.14194 5.19007 5.26989 5.38392 5.43014 5.46222 5.52343 5.57204 5.66725 5.67291 5.72082 5.77690 5.80047 5.89829 5.95052 6.00079 6.03925 6.10130 6.17133 6.28953 6.31626 6.37412 6.42106 6.50456 6.56784 6.64348 6.86790 6.99345 7.31944 7.86149 7.91809 8.33886 8.51698 9.11975 9.84301 10.03778 11.33209 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.004599 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.398325 B = 6086.688588 C = 7267.862086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.110 3.890 7 N -0.718 5.718 8 C 0.509 3.491 9 O -0.552 6.552 10 C -0.138 4.138 11 C -0.042 4.042 12 H 0.077 0.923 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.180 4.180 16 C -0.182 4.182 17 N -0.746 5.746 18 C -0.242 4.242 19 H 0.094 0.906 20 C 0.008 3.992 21 N -0.931 5.931 22 Si 0.879 3.121 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.362 0.638 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 -13.240 3.755 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.079 0.921 6 C -0.014 4.014 7 N -0.370 5.370 8 C 0.296 3.704 9 O -0.431 6.431 10 C -0.178 4.178 11 C -0.060 4.060 12 H 0.095 0.905 13 C -0.207 4.207 14 C -0.166 4.166 15 C -0.217 4.217 16 C -0.219 4.219 17 N -0.389 5.389 18 C -0.371 4.371 19 H 0.112 0.888 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.710 3.290 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.245 0.755 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.090 -13.396 3.336 17.099 hybrid contribution 1.204 -0.672 -0.208 1.395 sum -8.886 -14.068 3.128 16.930 Atomic orbital electron populations 1.21935 0.96641 1.00946 1.01153 1.21693 0.93780 0.98030 0.99516 1.21827 1.04403 0.94242 0.99211 1.20523 0.85001 0.91342 0.96627 0.92051 1.21761 0.97674 0.93056 0.88913 1.46090 1.48735 1.11205 1.30958 1.20664 0.81373 0.81975 0.86437 1.90623 1.36826 1.67695 1.47943 1.21740 1.02392 0.96067 0.97558 1.20425 1.00452 0.92006 0.93165 0.90484 1.21919 1.00289 1.00040 0.98468 1.22418 0.99438 1.03341 0.91417 1.22995 0.98505 0.95998 1.04194 1.22962 1.03969 0.97518 0.97451 1.42835 1.00384 1.20632 1.75083 1.19050 0.89272 0.96097 1.32704 0.88778 1.24648 0.96194 0.97050 1.00916 1.69689 1.07092 1.29739 1.51264 0.86640 0.79882 0.83429 0.79050 1.21186 1.21865 1.20364 0.93020 0.93428 0.93090 0.92055 0.89298 0.94983 0.93780 0.92103 0.91309 0.75465 0.88966 0.88855 0.93343 0.90453 0.93050 0.87836 0.88852 0.89076 0.88875 0.88704 0.80531 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.84 37.16 0.33 -1.69 16 2 C -0.11 -1.77 2.69 -90.63 -0.24 -2.02 16 3 C -0.14 -2.51 8.26 37.16 0.31 -2.20 16 4 C 0.17 3.05 2.18 -67.94 -0.15 2.90 16 5 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 6 C 0.11 1.75 4.73 -4.04 -0.02 1.73 16 7 N -0.72 -11.07 5.39 -60.29 -0.32 -11.39 16 8 C 0.51 7.69 7.55 -10.98 -0.08 7.61 16 9 O -0.55 -9.75 13.96 5.56 0.08 -9.67 16 10 C -0.14 -1.64 5.09 -27.88 -0.14 -1.78 16 11 C -0.04 -0.47 2.19 -90.63 -0.20 -0.67 16 12 H 0.08 0.96 7.71 -51.93 -0.40 0.56 16 13 C -0.15 -1.80 8.92 37.16 0.33 -1.47 16 14 C -0.15 -1.42 5.15 -90.62 -0.47 -1.89 16 15 C -0.18 -1.56 10.18 -26.73 -0.27 -1.83 16 16 C -0.18 -1.60 9.67 -26.73 -0.26 -1.86 16 17 N -0.75 -15.74 4.24 -53.43 -0.23 -15.96 16 18 C -0.24 -6.11 8.05 -15.06 -0.12 -6.23 16 19 H 0.09 2.57 7.63 -52.48 -0.40 2.17 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -27.66 13.97 55.49 0.78 -26.88 16 22 Si 0.88 21.05 27.74 -169.99 -4.71 16.33 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.23 6.52 56.52 0.37 -5.87 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.92 6.01 -51.93 -0.31 1.60 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.04 6.71 -51.93 -0.35 0.69 16 35 H 0.41 6.32 8.14 -40.82 -0.33 5.98 16 36 H 0.09 0.96 7.13 -51.93 -0.37 0.59 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 1.11 5.95 -51.93 -0.31 0.81 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 42 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.84 7.59 -51.93 -0.39 0.44 16 46 H 0.36 7.79 5.66 -40.82 -0.23 7.56 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -29.01 366.20 -8.49 -37.50 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -8.51 Total: 13.83 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.08 Total: -9.27 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.22 Total: -54.24 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.01 -8.49 -37.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753845633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.251 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds