Wall clock time and date at job start Tue Mar 31 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46738 * 2 1 4 4 C 1.52997 * 109.47328 * 120.00030 * 2 1 3 5 5 H 1.09002 * 109.47153 * 185.00042 * 4 2 1 6 6 C 1.53000 * 109.47060 * 305.00361 * 4 2 1 7 7 N 1.46507 * 109.46803 * 175.00213 * 6 4 2 8 8 C 1.34773 * 119.99647 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00340 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99967 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47267 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47118 * 55.00328 * 11 10 8 13 13 C 1.53004 * 109.47227 * 295.00436 * 11 10 8 14 14 C 1.52998 * 109.47161 * 175.00308 * 11 10 8 15 15 C 1.53003 * 117.49649 * 248.62357 * 14 11 10 16 16 C 1.53001 * 60.00112 * 252.50961 * 15 14 11 17 17 N 1.46500 * 109.47007 * 65.00131 * 4 2 1 18 18 C 1.36933 * 119.99983 * 84.99832 * 17 4 2 19 19 H 1.08002 * 120.00189 * 0.02562 * 18 17 4 20 20 C 1.38812 * 120.00422 * 179.97438 * 18 17 4 21 21 N 1.31623 * 119.99438 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00488 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46869 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47383 * 120.00043 * 22 20 18 25 25 H 1.48500 * 109.47270 * 240.00058 * 22 20 18 26 26 H 1.09003 * 109.47390 * 299.99337 * 1 2 3 27 27 H 1.09004 * 109.47759 * 59.99854 * 1 2 3 28 28 H 1.09002 * 109.46786 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46883 * 240.00633 * 2 1 3 30 30 H 1.09001 * 109.46917 * 60.00653 * 3 2 1 31 31 H 1.09004 * 109.46741 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47403 * 300.00111 * 3 2 1 33 33 H 1.09008 * 109.47142 * 294.99397 * 6 4 2 34 34 H 1.08990 * 109.47170 * 54.99895 * 6 4 2 35 35 H 0.96994 * 119.99737 * 359.97438 * 7 6 4 36 36 H 1.08994 * 109.46898 * 300.00344 * 10 8 7 37 37 H 1.09000 * 109.46513 * 60.00010 * 10 8 7 38 38 H 1.09003 * 109.46983 * 299.99974 * 13 11 10 39 39 H 1.08999 * 109.47161 * 60.00086 * 13 11 10 40 40 H 1.09004 * 109.47057 * 179.97438 * 13 11 10 41 41 H 1.08999 * 115.54619 * 34.33014 * 14 11 10 42 42 H 1.09000 * 117.49764 * 359.97438 * 15 14 11 43 43 H 1.09003 * 117.49376 * 145.02078 * 15 14 11 44 44 H 1.08995 * 117.50042 * 252.51788 * 16 15 14 45 45 H 1.08996 * 117.51736 * 107.47706 * 16 15 14 46 46 H 0.96997 * 120.00274 * 264.99726 * 17 4 2 47 47 H 0.97001 * 120.00131 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1264 -0.6443 1.2951 6 6 1.4299 -0.0763 2.4953 7 7 1.8228 -0.8398 3.6824 8 6 1.3996 -0.4537 4.9023 9 8 0.6932 0.5254 5.0174 10 6 1.8033 -1.2394 6.1234 11 6 1.1944 -0.5937 7.3696 12 1 0.1148 -0.5092 7.2444 13 6 1.7953 0.7994 7.5676 14 6 1.4997 -1.4595 8.5935 15 6 0.3264 -2.1835 9.2571 16 6 0.9719 -0.9802 9.9473 17 7 1.6525 -2.1328 1.1905 18 6 2.4346 -3.0299 0.5133 19 1 3.3374 -2.6970 0.0228 20 6 2.0678 -4.3676 0.4581 21 7 0.9684 -4.7737 1.0571 22 14 3.1351 -5.5915 -0.4651 23 1 4.3067 -4.8875 -1.0454 24 1 3.6036 -6.6447 0.4712 25 1 2.3431 -6.2153 -1.5554 26 1 -0.3634 0.5137 0.8901 27 1 -0.3635 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.7896 0.9486 2.5871 34 1 0.3435 -0.0737 2.4081 35 1 2.3875 -1.6230 3.5902 36 1 1.4430 -2.2640 6.0316 37 1 2.8898 -1.2427 6.2104 38 1 2.8748 0.7150 7.6928 39 1 1.5778 1.4162 6.6957 40 1 1.3611 1.2596 8.4552 41 1 2.4634 -1.9686 8.5806 42 1 -0.6629 -2.0426 8.8219 43 1 0.5182 -3.1693 9.6808 44 1 1.5883 -1.1744 10.8250 45 1 0.4076 -0.0479 9.9660 46 1 0.8419 -2.4320 1.6313 47 1 0.7118 -5.7083 1.0183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753845634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:00 Heat of formation + Delta-G solvation = -30.449220 kcal Electronic energy + Delta-G solvation = -22879.781828 eV Core-core repulsion = 19676.627336 eV Total energy + Delta-G solvation = -3203.154492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66543 -38.00933 -37.16318 -33.70031 -33.26374 -33.04428 -30.42010 -28.44688 -26.68880 -26.61513 -24.14704 -23.28438 -22.34608 -22.31903 -20.09881 -19.67064 -18.57573 -17.37177 -16.53133 -16.12790 -15.53093 -15.27790 -14.67441 -14.61348 -13.97680 -13.76080 -13.51877 -13.41118 -13.20746 -12.92826 -12.80074 -12.61616 -12.10268 -11.96061 -11.66407 -11.46228 -11.25293 -11.11450 -11.07226 -10.99883 -10.88189 -10.72595 -10.64728 -10.35585 -10.34096 -10.17575 -9.94758 -9.77533 -9.68170 -9.34556 -8.95026 -8.50625 -7.04027 -5.83842 -3.13480 3.03833 3.37926 3.44685 3.46436 3.60995 3.77096 4.52569 4.61195 4.78070 4.86294 4.98656 5.24365 5.31905 5.38679 5.39508 5.47730 5.50970 5.53790 5.62535 5.63539 5.72167 5.77024 5.82550 5.83329 5.90272 5.98004 5.99738 6.04014 6.08793 6.16459 6.20961 6.33407 6.38806 6.42332 6.44699 6.50789 6.64868 6.73551 6.92529 7.01057 7.09156 7.64817 8.02192 8.33784 8.66676 9.45994 10.01065 10.36898 11.38064 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.004309 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.662646 B = 6497.075909 C = 8033.527897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.148 4.148 4 C 0.170 3.830 5 H 0.052 0.948 6 C 0.110 3.890 7 N -0.714 5.714 8 C 0.510 3.490 9 O -0.555 6.555 10 C -0.136 4.136 11 C -0.042 4.042 12 H 0.077 0.923 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.181 4.181 16 C -0.180 4.180 17 N -0.720 5.720 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.009 4.009 21 N -0.929 5.929 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.409 0.591 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 8.867 11.208 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.060 3.940 5 H 0.070 0.930 6 C -0.014 4.014 7 N -0.365 5.365 8 C 0.296 3.704 9 O -0.434 6.434 10 C -0.176 4.176 11 C -0.061 4.061 12 H 0.095 0.905 13 C -0.206 4.206 14 C -0.165 4.165 15 C -0.218 4.218 16 C -0.217 4.217 17 N -0.361 5.361 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.735 3.265 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.245 0.755 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.553 9.451 11.182 14.723 hybrid contribution 0.543 -1.379 -0.570 1.588 sum 2.096 8.072 10.612 13.496 Atomic orbital electron populations 1.21793 0.95842 1.02315 0.99925 1.21735 0.96031 0.94598 1.00978 1.21910 1.00496 0.97210 1.00941 1.20509 0.97074 0.85883 0.90560 0.93003 1.21793 1.00345 0.94568 0.84688 1.46054 1.52661 1.31909 1.05909 1.20598 0.79996 0.84982 0.84779 1.90616 1.38282 1.27940 1.86596 1.21698 1.02511 1.00686 0.92677 1.20430 1.00812 0.94172 0.90714 0.90461 1.21916 0.99766 0.96398 1.02501 1.22375 0.98383 1.02440 0.93350 1.23030 0.97777 0.96552 1.04477 1.22909 1.04303 0.98768 0.95727 1.42454 1.28843 1.01213 1.63624 1.19257 1.03588 0.88527 1.25838 0.91124 1.24719 0.97704 0.97150 1.00998 1.69673 1.24554 1.15576 1.47935 0.86169 0.79539 0.81563 0.79188 1.20600 1.21923 1.21940 0.93407 0.94199 0.91636 0.90837 0.93032 0.93236 0.93543 0.91932 0.91431 0.75463 0.88664 0.89181 0.93458 0.90552 0.93203 0.87853 0.88755 0.89003 0.89129 0.88855 0.78052 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.60 37.16 0.32 -2.06 16 2 C -0.11 -1.89 2.88 -90.62 -0.26 -2.15 16 3 C -0.15 -2.06 8.95 37.16 0.33 -1.73 16 4 C 0.17 3.12 2.22 -67.93 -0.15 2.97 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C 0.11 1.87 4.53 -4.04 -0.02 1.85 16 7 N -0.71 -11.74 5.39 -60.29 -0.32 -12.07 16 8 C 0.51 8.17 7.55 -10.98 -0.08 8.09 16 9 O -0.55 -10.31 13.97 5.55 0.08 -10.24 16 10 C -0.14 -1.72 5.16 -27.88 -0.14 -1.86 16 11 C -0.04 -0.51 2.19 -90.62 -0.20 -0.71 16 12 H 0.08 1.06 7.71 -51.93 -0.40 0.66 16 13 C -0.15 -1.78 8.77 37.16 0.33 -1.45 16 14 C -0.15 -1.51 5.15 -90.62 -0.47 -1.98 16 15 C -0.18 -1.77 10.18 -26.73 -0.27 -2.05 16 16 C -0.18 -1.66 9.74 -26.73 -0.26 -1.92 16 17 N -0.72 -16.32 4.01 -53.43 -0.21 -16.53 16 18 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 22 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H 0.05 0.76 6.23 -51.93 -0.32 0.44 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.28 7.75 -51.93 -0.40 0.87 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.05 0.69 6.68 -51.93 -0.35 0.34 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.01 6.81 -51.92 -0.35 0.66 16 34 H 0.07 1.23 6.06 -51.93 -0.31 0.92 16 35 H 0.41 6.81 8.14 -40.82 -0.33 6.48 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 40 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16 41 H 0.10 1.00 8.11 -51.93 -0.42 0.57 16 42 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.86 7.61 -51.93 -0.39 0.47 16 46 H 0.39 9.55 7.80 -40.82 -0.32 9.23 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -28.44 370.32 -8.79 -37.22 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -8.48 Total: 15.18 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -1.12 Total: -9.68 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.19 Total: -54.50 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.44 -8.79 -37.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753845634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds