Wall clock time and date at job start Tue Mar 31 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.53001 * 109.46584 * 119.99965 * 2 1 3 5 5 H 1.09002 * 109.46628 * 184.99520 * 4 2 1 6 6 C 1.52996 * 109.47447 * 65.00100 * 4 2 1 7 7 N 1.46493 * 109.47485 * 184.99732 * 6 4 2 8 8 C 1.34778 * 120.00359 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99910 * 359.97438 * 8 7 6 10 10 C 1.50695 * 120.00071 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47196 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46505 * 304.99468 * 11 10 8 13 13 C 1.52997 * 109.47127 * 64.99596 * 11 10 8 14 14 C 1.52992 * 109.47223 * 185.00102 * 11 10 8 15 15 C 1.52996 * 117.50276 * 128.61963 * 14 11 10 16 16 C 1.52993 * 60.00427 * 252.50569 * 15 14 11 17 17 N 1.46498 * 109.47438 * 304.99565 * 4 2 1 18 18 C 1.36933 * 120.00217 * 275.00613 * 17 4 2 19 19 H 1.08004 * 120.00132 * 359.97438 * 18 17 4 20 20 C 1.38812 * 120.00141 * 179.97438 * 18 17 4 21 21 N 1.31620 * 120.00191 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99825 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47416 * 90.00005 * 22 20 18 24 24 H 1.48501 * 109.46797 * 209.99779 * 22 20 18 25 25 H 1.48508 * 109.46994 * 329.99367 * 22 20 18 26 26 H 1.08992 * 109.47057 * 300.00430 * 1 2 3 27 27 H 1.09006 * 109.46477 * 59.99949 * 1 2 3 28 28 H 1.08997 * 109.47427 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47013 * 239.99830 * 2 1 3 30 30 H 1.09003 * 109.47004 * 299.99388 * 3 2 1 31 31 H 1.09001 * 109.47328 * 60.00023 * 3 2 1 32 32 H 1.08998 * 109.46849 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47139 * 64.99543 * 6 4 2 34 34 H 1.09006 * 109.46758 * 305.00090 * 6 4 2 35 35 H 0.97006 * 119.99938 * 359.97438 * 7 6 4 36 36 H 1.09007 * 109.47361 * 59.99626 * 10 8 7 37 37 H 1.08996 * 109.47293 * 299.99767 * 10 8 7 38 38 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46832 * 60.00321 * 13 11 10 40 40 H 1.09004 * 109.47261 * 300.00303 * 13 11 10 41 41 H 1.09007 * 115.55057 * 274.32835 * 14 11 10 42 42 H 1.09003 * 117.49933 * 359.97438 * 15 14 11 43 43 H 1.09000 * 117.50148 * 145.01863 * 15 14 11 44 44 H 1.08997 * 117.50357 * 252.51377 * 16 15 14 45 45 H 1.08997 * 117.49776 * 107.48026 * 16 15 14 46 46 H 0.97004 * 119.99592 * 95.00093 * 17 4 2 47 47 H 0.96996 * 119.99766 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1263 -0.6444 1.2952 6 6 1.6352 -2.1954 1.1881 7 7 2.0182 -2.8593 2.4365 8 6 1.7594 -4.1707 2.6093 9 8 1.2090 -4.8011 1.7315 10 6 2.1530 -4.8535 3.8938 11 6 1.7483 -6.3278 3.8325 12 1 0.6843 -6.4034 3.6085 13 6 2.5515 -7.0320 2.7372 14 6 2.0338 -6.9915 5.1811 15 6 0.8975 -7.7800 5.8352 16 6 1.3204 -6.4273 6.4115 17 7 1.4558 -0.1036 2.4424 18 6 2.0441 1.0002 2.9997 19 1 2.9390 1.4153 2.5599 20 6 1.4903 1.5857 4.1299 21 7 2.0561 2.6465 4.6659 22 14 -0.0570 0.8674 4.8910 23 1 0.3169 -0.1504 5.9055 24 1 -0.8376 1.9506 5.5410 25 1 -0.8804 0.2312 3.8315 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 2.1407 -2.6766 0.3507 34 1 0.5562 -2.2706 1.0527 35 1 2.4588 -2.3553 3.1385 36 1 1.6467 -4.3726 4.7309 37 1 3.2318 -4.7778 4.0298 38 1 2.2629 -8.0822 2.6932 39 1 3.6155 -6.9563 2.9614 40 1 2.3480 -6.5591 1.7764 41 1 3.0488 -7.3657 5.3154 42 1 -0.0538 -7.8255 5.3049 43 1 1.1646 -8.6732 6.3998 44 1 1.8659 -6.4306 7.3551 45 1 0.6477 -5.5832 6.2600 46 1 0.6523 -0.4766 2.8376 47 1 1.6689 3.0558 5.4554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753845635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:02 Heat of formation + Delta-G solvation = -25.742957 kcal Electronic energy + Delta-G solvation = -23109.951048 eV Core-core repulsion = 19907.000635 eV Total energy + Delta-G solvation = -3202.950413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.81276 -38.08614 -37.29196 -33.97464 -33.13278 -32.92257 -30.70987 -28.98539 -27.17081 -26.46371 -23.91843 -23.14696 -22.48277 -21.93028 -20.34559 -19.68101 -18.90636 -17.73908 -16.72380 -16.02915 -15.52198 -15.43923 -14.84310 -14.72458 -14.27804 -13.92349 -13.71179 -13.18709 -13.14622 -12.99809 -12.84661 -12.54415 -12.17053 -11.94680 -11.71189 -11.37816 -11.36629 -11.30427 -11.15524 -11.07073 -10.89269 -10.85175 -10.61822 -10.33526 -10.32326 -10.12780 -10.08622 -9.96861 -9.49714 -9.44223 -8.97212 -8.68814 -7.35486 -5.84111 -3.19647 2.89129 3.30107 3.34999 3.40072 3.44183 3.71901 4.51198 4.51886 4.72361 4.78856 4.92922 5.10823 5.17016 5.21156 5.27437 5.40475 5.43638 5.46315 5.54105 5.63751 5.64218 5.73373 5.74074 5.75514 5.79515 5.97255 5.99199 6.00749 6.04166 6.09086 6.28166 6.30938 6.31251 6.40377 6.52262 6.55929 6.64900 6.71386 6.87202 6.95112 7.30634 7.85706 7.92166 8.34291 8.51381 9.12518 9.84858 10.04631 11.33650 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.004746 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.237560 B = 5898.737030 C = 7164.269492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.173 3.827 5 H 0.062 0.938 6 C 0.109 3.891 7 N -0.718 5.718 8 C 0.509 3.491 9 O -0.552 6.552 10 C -0.138 4.138 11 C -0.043 4.043 12 H 0.077 0.923 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.180 4.180 16 C -0.183 4.183 17 N -0.743 5.743 18 C -0.240 4.240 19 H 0.095 0.905 20 C 0.008 3.992 21 N -0.931 5.931 22 Si 0.877 3.123 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.409 0.591 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.362 0.638 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 -16.205 -2.047 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.200 4.200 4 C 0.063 3.937 5 H 0.080 0.920 6 C -0.015 4.015 7 N -0.370 5.370 8 C 0.295 3.705 9 O -0.431 6.431 10 C -0.178 4.178 11 C -0.061 4.061 12 H 0.095 0.905 13 C -0.206 4.206 14 C -0.166 4.166 15 C -0.217 4.217 16 C -0.220 4.220 17 N -0.386 5.386 18 C -0.370 4.370 19 H 0.112 0.888 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.708 3.292 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.245 0.755 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.091 -16.431 -2.610 16.637 hybrid contribution -0.960 -0.023 1.046 1.420 sum -0.869 -16.455 -1.564 16.552 Atomic orbital electron populations 1.21787 0.95975 1.00517 1.01614 1.21588 0.95897 0.97511 0.97803 1.21849 0.99875 0.95932 1.02319 1.20525 0.97328 0.88209 0.87616 0.92010 1.21758 1.00446 0.93402 0.85920 1.46089 1.61177 1.09675 1.20068 1.20666 0.78654 0.82052 0.89097 1.90626 1.43100 1.64766 1.44561 1.21740 1.03499 0.96324 0.96195 1.20434 1.01058 0.92049 0.92608 0.90488 1.21908 0.98790 1.00050 0.99826 1.22407 0.97270 1.03617 0.93303 1.22993 0.99242 0.95256 1.04197 1.22972 1.04163 0.97340 0.97478 1.42801 1.31258 1.34336 1.30224 1.19054 1.08250 1.02735 1.06953 0.88765 1.24635 0.98356 0.97572 0.98209 1.69686 1.41376 1.22769 1.24006 0.86676 0.84658 0.78457 0.79440 1.21177 1.21873 1.20372 0.91604 0.94041 0.93781 0.92937 0.94835 0.89280 0.93904 0.91695 0.91636 0.75456 0.88913 0.88891 0.93076 0.93381 0.90469 0.87839 0.88858 0.89068 0.88852 0.88667 0.80511 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.74 37.16 0.32 -1.98 16 2 C -0.11 -1.74 2.74 -90.62 -0.25 -1.99 16 3 C -0.14 -2.52 8.46 37.16 0.31 -2.21 16 4 C 0.17 2.99 2.28 -67.93 -0.16 2.83 16 5 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 6 C 0.11 1.72 5.10 -4.05 -0.02 1.70 16 7 N -0.72 -10.91 5.39 -60.30 -0.32 -11.23 16 8 C 0.51 7.61 7.55 -10.99 -0.08 7.53 16 9 O -0.55 -9.70 13.97 5.56 0.08 -9.62 16 10 C -0.14 -1.63 5.09 -27.88 -0.14 -1.77 16 11 C -0.04 -0.48 2.19 -90.62 -0.20 -0.68 16 12 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 13 C -0.15 -1.68 8.92 37.16 0.33 -1.35 16 14 C -0.15 -1.42 5.15 -90.62 -0.47 -1.89 16 15 C -0.18 -1.62 10.18 -26.74 -0.27 -1.90 16 16 C -0.18 -1.72 9.67 -26.73 -0.26 -1.98 16 17 N -0.74 -15.40 3.33 -53.43 -0.18 -15.58 16 18 C -0.24 -6.02 8.23 -15.06 -0.12 -6.14 16 19 H 0.09 2.56 7.55 -52.48 -0.40 2.16 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -27.58 13.97 55.49 0.78 -26.81 16 22 Si 0.88 20.95 27.74 -169.99 -4.71 16.24 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 26 H 0.06 1.23 7.47 -51.93 -0.39 0.84 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.67 6.46 -51.93 -0.34 0.33 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 1.89 5.99 -51.93 -0.31 1.58 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 35 H 0.41 6.19 8.14 -40.82 -0.33 5.86 16 36 H 0.09 1.05 7.12 -51.93 -0.37 0.68 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 1.05 5.95 -51.93 -0.31 0.74 16 41 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 42 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 46 H 0.36 7.70 5.66 -40.82 -0.23 7.47 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -28.77 364.89 -8.41 -37.19 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -8.45 Total: 13.99 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -1.09 Total: -9.68 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.27 Total: -53.62 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.77 -8.41 -37.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753845635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.443 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds