Wall clock time and date at job start Tue Mar 31 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47219 * 2 1 4 4 C 1.53007 * 109.46728 * 240.00492 * 2 1 3 5 5 C 1.52997 * 109.46762 * 174.99978 * 4 2 1 6 6 N 1.46510 * 109.46449 * 179.97438 * 5 4 2 7 7 C 1.36942 * 119.99405 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00229 * 0.02562 * 7 6 5 9 9 C 1.38812 * 119.99614 * 179.97438 * 7 6 5 10 10 N 1.31613 * 120.00076 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99742 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47538 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47428 * 120.00496 * 11 9 7 14 14 H 1.48504 * 109.47044 * 240.00107 * 11 9 7 15 15 N 1.46494 * 109.47181 * 120.00697 * 2 1 3 16 16 C 1.34782 * 119.99907 * 274.99593 * 15 2 1 17 17 O 1.21275 * 119.99652 * 359.97438 * 16 15 2 18 18 C 1.50704 * 119.99874 * 179.72497 * 16 15 2 19 19 H 1.09001 * 110.01564 * 332.45143 * 18 16 15 20 20 C 1.54263 * 110.03067 * 211.00533 * 18 16 15 21 21 C 1.54884 * 104.19504 * 217.10666 * 20 18 16 22 22 C 1.54886 * 102.75111 * 37.94611 * 21 20 18 23 23 C 1.53880 * 110.02940 * 93.84290 * 18 16 15 24 24 C 1.53002 * 110.02749 * 238.56728 * 23 18 16 25 25 C 1.52994 * 110.03257 * 359.94366 * 23 18 16 26 26 H 1.09004 * 109.46737 * 299.99780 * 1 2 3 27 27 H 1.08997 * 109.47504 * 59.99073 * 1 2 3 28 28 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46661 * 295.00208 * 4 2 1 30 30 H 1.08998 * 109.47187 * 54.99668 * 4 2 1 31 31 H 1.08997 * 109.47317 * 299.99634 * 5 4 2 32 32 H 1.09003 * 109.47106 * 60.00497 * 5 4 2 33 33 H 0.96991 * 120.00394 * 0.02562 * 6 5 4 34 34 H 0.97005 * 120.00383 * 179.97438 * 10 9 7 35 35 H 0.96998 * 120.00299 * 94.99978 * 15 2 1 36 36 H 1.08998 * 110.48846 * 335.78551 * 20 18 16 37 37 H 1.08999 * 110.48732 * 98.42846 * 20 18 16 38 38 H 1.09002 * 110.75915 * 279.62650 * 21 20 18 39 39 H 1.09002 * 110.91666 * 156.33440 * 21 20 18 40 40 H 1.09006 * 110.48843 * 203.38218 * 22 21 20 41 41 H 1.08996 * 110.60179 * 80.78973 * 22 21 20 42 42 H 1.09001 * 109.47360 * 59.99873 * 24 23 18 43 43 H 1.09000 * 109.47073 * 180.02562 * 24 23 18 44 44 H 1.09004 * 109.47517 * 299.99955 * 24 23 18 45 45 H 1.09003 * 109.47013 * 61.09318 * 25 23 18 46 46 H 1.08998 * 109.46957 * 181.08134 * 25 23 18 47 47 H 1.09000 * 109.48092 * 301.08633 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3138 6 7 4.0530 -1.3043 -2.5099 7 6 5.3950 -1.3403 -2.7798 8 1 6.0935 -0.8596 -2.1109 9 6 5.8577 -1.9956 -3.9127 10 7 5.0065 -2.5818 -4.7276 11 14 7.6884 -2.0453 -4.2806 12 1 8.4270 -1.3174 -3.2175 13 1 8.1467 -3.4571 -4.3230 14 1 7.9472 -1.4013 -5.5935 15 7 2.0183 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8592 1.1584 2.4115 18 6 2.6436 -0.7305 3.5890 19 1 2.3934 -1.7900 3.5339 20 6 2.0161 -0.1032 4.8509 21 6 3.1523 -0.1481 5.9025 22 6 4.4113 0.1732 5.0595 23 6 4.1666 -0.5547 3.7216 24 6 4.8526 -1.9223 3.7358 25 6 4.7001 0.2867 2.5605 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.7514 -1.7715 -1.2057 30 1 1.6052 -0.2616 -2.1370 31 1 3.8531 0.4370 -1.3575 32 1 3.9994 -1.0729 -0.4262 33 1 3.4257 -1.7357 -3.1108 34 1 5.3298 -3.0394 -5.5195 35 1 2.2490 -1.6319 1.1524 36 1 1.7168 0.9267 4.6565 37 1 1.1627 -0.6926 5.1860 38 1 3.2281 -1.1403 6.3473 39 1 2.9999 0.6081 6.6727 40 1 5.3059 -0.2147 5.5467 41 1 4.5011 1.2474 4.8984 42 1 4.6322 -2.4491 2.8073 43 1 5.9301 -1.7873 3.8304 44 1 4.4843 -2.5049 4.5803 45 1 4.2382 1.2737 2.5849 46 1 5.7813 0.3893 2.6529 47 1 4.4609 -0.2032 1.6166 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753991665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:12 Heat of formation + Delta-G solvation = -60.752468 kcal Electronic energy + Delta-G solvation = -23468.676283 eV Core-core repulsion = 20264.207743 eV Total energy + Delta-G solvation = -3204.468540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67088 -38.14429 -36.29851 -34.32155 -32.39829 -31.89648 -30.78657 -29.03291 -27.86336 -27.35552 -24.89288 -24.00008 -22.24515 -21.28796 -20.59167 -20.34959 -18.78514 -17.17125 -16.91032 -16.06548 -15.68583 -15.04345 -14.75019 -14.47946 -13.88307 -13.80480 -13.59390 -13.49919 -13.30453 -13.15019 -12.91712 -12.83796 -12.37024 -12.08197 -11.85367 -11.72601 -11.48051 -11.21437 -11.18780 -11.03617 -10.86344 -10.80068 -10.70873 -10.64360 -10.64198 -10.55177 -10.48037 -10.01236 -9.70896 -9.55584 -8.92993 -8.84047 -6.92620 -5.77368 -3.05934 2.76609 3.31216 3.42602 3.48510 3.50619 4.31222 4.41962 4.55143 4.58502 4.92331 5.06491 5.15108 5.18085 5.21690 5.25977 5.30080 5.33998 5.38927 5.50107 5.55343 5.64173 5.72843 5.74674 5.77590 5.78981 5.79596 5.91653 5.95691 5.96660 6.00884 6.05802 6.16640 6.22998 6.25411 6.25728 6.31191 6.35681 6.40513 6.63551 6.83007 6.88777 7.66327 7.70210 8.38126 8.41696 9.52893 10.10781 10.45417 11.45677 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.004274 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.937880 B = 6549.132725 C = 7751.373734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.721 5.721 16 C 0.528 3.472 17 O -0.546 6.546 18 C -0.107 4.107 19 H 0.089 0.911 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.051 4.051 24 C -0.141 4.141 25 C -0.157 4.157 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.017 0.983 32 H 0.019 0.981 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.400 0.600 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.998 2.346 19.941 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.737 3.263 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.218 1.218 15 N -0.372 5.372 16 C 0.315 3.685 17 O -0.424 6.424 18 C -0.129 4.129 19 H 0.107 0.893 20 C -0.150 4.150 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.052 4.052 24 C -0.198 4.198 25 C -0.214 4.214 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.234 0.766 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.025 3.224 19.967 21.411 hybrid contribution 0.941 -0.787 -0.660 1.394 sum -6.084 2.437 19.307 20.389 Atomic orbital electron populations 1.22151 0.95612 1.01885 1.02177 1.20948 0.93454 0.97676 0.83963 0.89508 1.22065 0.98049 1.00752 0.96470 1.20636 0.90380 0.95528 0.90702 1.42381 1.05381 1.64918 1.25137 1.19270 0.83837 1.28287 1.05484 0.91222 1.24731 0.97664 1.00926 0.97688 1.69666 1.32684 1.40772 1.15156 0.86134 0.85148 0.77219 0.77821 1.20555 1.21861 1.21834 1.46226 1.67084 1.14139 1.09715 1.20366 0.76288 0.87324 0.84500 1.90649 1.50585 1.16018 1.85103 1.22113 0.96455 1.00529 0.93768 0.89305 1.22344 0.97463 1.02390 0.92798 1.22456 0.94836 1.01343 0.97322 1.22489 0.97830 1.00514 0.94348 1.21029 0.91893 0.96210 0.96050 1.21949 1.00501 0.95387 1.01947 1.22161 1.01252 1.00343 0.97657 0.92496 0.91663 0.92617 0.91444 0.90375 0.96525 0.96326 0.78346 0.93580 0.76566 0.89642 0.91672 0.91600 0.91477 0.91472 0.91230 0.92153 0.92227 0.92573 0.91670 0.92367 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 2 C 0.14 1.97 2.57 -67.93 -0.17 1.80 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 4 C -0.14 -2.09 4.87 -26.73 -0.13 -2.22 16 5 C 0.16 3.09 6.15 -4.04 -0.02 3.06 16 6 N -0.73 -18.58 5.60 -59.90 -0.34 -18.91 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 11 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 15 N -0.72 -9.05 4.07 -53.80 -0.22 -9.27 16 16 C 0.53 7.01 4.67 -10.98 -0.05 6.96 16 17 O -0.55 -9.00 14.57 5.56 0.08 -8.91 16 18 C -0.11 -1.14 2.95 -90.65 -0.27 -1.40 16 19 H 0.09 0.80 7.67 -51.93 -0.40 0.41 16 20 C -0.11 -1.11 6.31 -25.08 -0.16 -1.27 16 21 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 22 C -0.11 -1.08 5.90 -25.08 -0.15 -1.23 16 23 C -0.05 -0.54 0.94 -153.39 -0.14 -0.68 16 24 C -0.14 -1.34 8.14 37.16 0.30 -1.04 16 25 C -0.16 -2.02 7.22 37.15 0.27 -1.76 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.37 7.25 -51.93 -0.38 -0.01 16 33 H 0.38 10.14 7.67 -40.82 -0.31 9.82 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 35 H 0.40 4.48 8.60 -40.82 -0.35 4.13 16 36 H 0.09 1.02 6.88 -51.93 -0.36 0.66 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.57 7.84 -51.93 -0.41 0.16 16 41 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.94 6.94 -51.93 -0.36 0.58 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.95 6.60 -51.93 -0.34 0.61 16 LS Contribution 366.63 15.07 5.53 5.53 Total: -1.00 -31.71 366.63 -8.59 -40.30 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -8.75 Total: 9.24 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.59 Total: -7.89 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.17 Total: -55.72 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.71 -8.59 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753991665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.449 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds