Wall clock time and date at job start Tue Mar 31 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47199 * 2 1 4 4 C 1.52997 * 109.47433 * 120.00289 * 2 1 3 5 5 C 1.53004 * 109.47310 * 185.00132 * 4 2 1 6 6 N 1.46501 * 109.46940 * 179.97438 * 5 4 2 7 7 C 1.36938 * 119.99722 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99663 * 0.02562 * 7 6 5 9 9 C 1.38809 * 120.00062 * 179.97438 * 7 6 5 10 10 N 1.31615 * 119.99860 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99901 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46944 * 90.00444 * 11 9 7 13 13 H 1.48498 * 109.46971 * 210.00277 * 11 9 7 14 14 H 1.48500 * 109.47237 * 330.00158 * 11 9 7 15 15 N 1.46501 * 109.46997 * 240.00573 * 2 1 3 16 16 C 1.34771 * 120.00253 * 84.99709 * 15 2 1 17 17 O 1.21276 * 120.00290 * 359.97438 * 16 15 2 18 18 C 1.50707 * 119.99827 * 180.02562 * 16 15 2 19 19 H 1.08992 * 110.43405 * 323.73531 * 18 16 15 20 20 C 1.54884 * 110.48305 * 201.05359 * 18 16 15 21 21 C 1.54963 * 102.77535 * 203.40535 * 20 18 16 22 22 C 1.54259 * 104.16309 * 37.88995 * 21 20 18 23 23 C 1.53877 * 106.64079 * 336.44726 * 22 21 20 24 24 C 1.52991 * 110.03516 * 119.25627 * 23 22 21 25 25 C 1.53001 * 110.03334 * 240.64632 * 23 22 21 26 26 H 1.09002 * 109.46737 * 299.99812 * 1 2 3 27 27 H 1.08993 * 109.47138 * 59.99682 * 1 2 3 28 28 H 1.08993 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46827 * 304.99924 * 4 2 1 30 30 H 1.08995 * 109.47319 * 64.99712 * 4 2 1 31 31 H 1.08994 * 109.46740 * 300.00034 * 5 4 2 32 32 H 1.09000 * 109.46810 * 59.99563 * 5 4 2 33 33 H 0.96996 * 120.00121 * 359.97438 * 6 5 4 34 34 H 0.97002 * 119.99778 * 179.97438 * 10 9 7 35 35 H 0.97007 * 119.99553 * 264.99645 * 15 2 1 36 36 H 1.08998 * 110.76042 * 321.69381 * 20 18 16 37 37 H 1.09004 * 110.75969 * 84.87778 * 20 18 16 38 38 H 1.09000 * 110.48066 * 279.23439 * 21 20 18 39 39 H 1.09003 * 110.53221 * 156.57040 * 21 20 18 40 40 H 1.09002 * 110.03757 * 217.13764 * 22 21 20 41 41 H 1.09000 * 110.03432 * 95.75088 * 22 21 20 42 42 H 1.09005 * 109.47302 * 54.71956 * 24 23 22 43 43 H 1.09004 * 109.47103 * 174.71784 * 24 23 22 44 44 H 1.08994 * 109.47579 * 294.71166 * 24 23 22 45 45 H 1.09004 * 109.47275 * 58.53718 * 25 23 22 46 46 H 1.08998 * 109.47233 * 178.54541 * 25 23 22 47 47 H 1.09007 * 109.46712 * 298.54010 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5650 -0.6133 1.3136 6 7 4.0533 -1.3034 2.5101 7 6 5.3954 -1.3401 2.7795 8 1 6.0938 -0.8599 2.1101 9 6 5.8580 -1.9936 3.9134 10 7 5.0068 -2.5783 4.7293 11 14 7.6889 -2.0442 4.2805 12 1 8.0602 -0.8692 5.1092 13 1 8.0115 -3.2919 5.0182 14 1 8.4504 -2.0117 3.0060 15 7 2.0184 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8581 1.1585 -2.4117 18 6 2.6488 -0.7287 -3.5878 19 1 3.4105 -1.4609 -3.3205 20 6 3.2079 0.2901 -4.6118 21 6 3.0935 -0.4755 -5.9542 22 6 1.7647 -1.2499 -5.8352 23 6 1.4816 -1.4105 -4.3312 24 6 0.1606 -0.7280 -3.9707 25 6 1.4214 -2.8948 -3.9648 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6055 -0.2618 2.1369 30 1 1.7518 -1.7715 1.2055 31 1 3.9995 -1.0727 0.4259 32 1 3.8533 0.4370 1.3572 33 1 3.4259 -1.7344 3.1113 34 1 5.3302 -3.0353 5.5215 35 1 2.2491 -1.6317 -1.1527 36 1 2.5985 1.1936 -4.6300 37 1 4.2472 0.5315 -4.3886 38 1 3.9284 -1.1664 -6.0716 39 1 3.0546 0.2227 -6.7904 40 1 1.8599 -2.2293 -6.3039 41 1 0.9605 -0.6864 -6.3083 42 1 -0.6351 -1.1182 -4.6054 43 1 -0.0777 -0.9267 -2.9258 44 1 0.2534 0.3471 -4.1240 45 1 2.3658 -3.3722 -4.2263 46 1 1.2462 -2.9979 -2.8940 47 1 0.6090 -3.3717 -4.5134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753991667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:16 Heat of formation + Delta-G solvation = -62.343474 kcal Electronic energy + Delta-G solvation = -23215.400934 eV Core-core repulsion = 20010.863403 eV Total energy + Delta-G solvation = -3204.537531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64629 -38.20769 -36.31645 -34.32792 -32.47078 -31.87369 -30.78509 -29.08772 -27.87990 -27.49428 -24.97247 -24.01410 -22.30497 -21.31560 -20.51040 -20.34098 -18.90267 -17.20410 -16.92488 -16.10439 -15.70923 -14.91964 -14.73274 -14.61388 -13.91350 -13.76166 -13.67200 -13.50726 -13.36479 -13.29483 -13.02701 -12.83642 -12.44104 -12.15439 -12.02490 -11.74156 -11.62372 -11.27513 -11.19460 -11.03156 -10.87078 -10.77425 -10.76101 -10.69628 -10.66767 -10.60302 -10.55220 -10.04045 -9.70117 -9.55937 -8.93517 -8.83448 -6.92320 -5.76852 -3.05504 2.76185 3.31254 3.43652 3.48736 3.50324 4.26045 4.33721 4.49011 4.57857 4.89652 5.00897 5.06689 5.11816 5.16062 5.17736 5.28655 5.30312 5.38922 5.42208 5.48078 5.55740 5.60833 5.69438 5.72357 5.73957 5.77880 5.79826 5.88891 5.93141 5.95500 6.02788 6.08358 6.08536 6.20364 6.22949 6.27263 6.30784 6.36144 6.63689 6.82867 6.89022 7.66497 7.70202 8.38134 8.42326 9.53342 10.11258 10.46022 11.46139 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.003588 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.733816 B = 7802.649627 C = 8412.474879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.087 0.913 4 C -0.134 4.134 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.720 5.720 16 C 0.528 3.472 17 O -0.545 6.545 18 C -0.110 4.110 19 H 0.095 0.905 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.053 4.053 24 C -0.148 4.148 25 C -0.143 4.143 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.400 0.600 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.262 1.201 -20.751 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.371 5.371 16 C 0.314 3.686 17 O -0.423 6.423 18 C -0.131 4.131 19 H 0.113 0.887 20 C -0.145 4.145 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.053 4.053 24 C -0.205 4.205 25 C -0.201 4.201 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.234 0.766 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.296 2.068 -20.782 23.285 hybrid contribution 0.958 -0.756 0.645 1.380 sum -9.338 1.312 -20.137 22.235 Atomic orbital electron populations 1.22158 0.95634 1.01856 1.02192 1.20952 0.93433 0.97689 0.83957 0.89489 1.22056 0.98016 1.00732 0.96467 1.20625 0.90415 0.95571 0.90688 1.42371 1.05367 1.65014 1.25084 1.19237 0.83859 1.28469 1.05485 0.91263 1.24736 0.97712 1.00908 0.97648 1.69659 1.32791 1.40775 1.15083 0.86188 0.85091 0.77043 0.77882 1.21693 1.21744 1.20761 1.46199 1.67110 1.14097 1.09652 1.20338 0.76919 0.87108 0.84210 1.90655 1.50548 1.16086 1.85010 1.22326 0.98544 0.98746 0.93512 0.88684 1.22417 1.01301 0.98048 0.92772 1.22358 0.97425 0.98851 0.97524 1.22277 0.97764 1.00446 0.94697 1.21050 0.94297 0.95159 0.94839 1.22051 0.95670 1.01280 1.01479 1.21987 1.02015 0.94362 1.01691 0.91666 0.92447 0.92637 0.90367 0.91459 0.96393 0.96489 0.78336 0.93524 0.76578 0.89806 0.91285 0.91571 0.91489 0.91525 0.91544 0.92639 0.92380 0.91605 0.92200 0.92423 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 37.16 0.35 -1.54 16 2 C 0.14 1.98 2.57 -67.93 -0.17 1.80 16 3 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.13 -2.09 4.87 -26.73 -0.13 -2.22 16 5 C 0.15 3.12 6.15 -4.04 -0.02 3.10 16 6 N -0.73 -18.77 5.60 -59.91 -0.34 -19.11 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 11 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 N -0.72 -9.07 4.53 -53.80 -0.24 -9.31 16 16 C 0.53 6.99 4.97 -10.98 -0.05 6.94 16 17 O -0.55 -8.96 14.73 5.56 0.08 -8.88 16 18 C -0.11 -1.16 2.71 -90.11 -0.24 -1.40 16 19 H 0.09 0.93 7.85 -51.93 -0.41 0.53 16 20 C -0.11 -1.11 6.15 -24.70 -0.15 -1.26 16 21 C -0.12 -1.00 6.84 -25.04 -0.17 -1.17 16 22 C -0.11 -0.90 6.11 -25.62 -0.16 -1.06 16 23 C -0.05 -0.47 0.86 -153.39 -0.13 -0.60 16 24 C -0.15 -1.45 7.15 37.15 0.27 -1.19 16 25 C -0.14 -1.13 8.15 37.16 0.30 -0.83 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 34 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.40 4.53 8.60 -40.82 -0.35 4.17 16 36 H 0.08 1.00 7.25 -51.93 -0.38 0.62 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 41 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.62 7.43 -51.93 -0.39 0.23 16 44 H 0.06 0.76 7.38 -51.93 -0.38 0.37 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -31.93 369.14 -8.65 -40.58 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.85 Total: 8.16 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.57 Total: -6.90 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.15 Total: -56.08 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.93 -8.65 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753991667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.761 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds