Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46958 * 2 1 4 4 C 1.53000 * 109.47100 * 240.00080 * 2 1 3 5 5 C 1.52998 * 109.47145 * 175.00113 * 4 2 1 6 6 N 1.46506 * 109.47162 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99931 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00133 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99977 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99914 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00136 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47509 * 59.99563 * 11 9 7 13 13 H 1.48503 * 109.47334 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47205 * 299.99960 * 11 9 7 15 15 N 1.46499 * 109.47017 * 119.99969 * 2 1 3 16 16 C 1.34778 * 119.99846 * 274.99691 * 15 2 1 17 17 O 1.21278 * 119.99825 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99886 * 179.97438 * 16 15 2 19 19 H 1.09000 * 110.01260 * 27.11377 * 18 16 15 20 20 C 1.54264 * 110.03272 * 148.50085 * 18 16 15 21 21 C 1.54879 * 104.19751 * 142.89798 * 20 18 16 22 22 C 1.54889 * 102.74968 * 322.05650 * 21 20 18 23 23 C 1.53874 * 110.03562 * 265.66896 * 18 16 15 24 24 C 1.53002 * 110.03152 * 359.97438 * 23 18 16 25 25 C 1.53000 * 110.03320 * 121.42901 * 23 18 16 26 26 H 1.09002 * 109.47356 * 300.00011 * 1 2 3 27 27 H 1.09002 * 109.47057 * 60.00246 * 1 2 3 28 28 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47315 * 54.99681 * 4 2 1 30 30 H 1.09003 * 109.47157 * 294.99861 * 4 2 1 31 31 H 1.09003 * 109.46887 * 299.99913 * 5 4 2 32 32 H 1.08999 * 109.47171 * 60.00115 * 5 4 2 33 33 H 0.96998 * 119.99582 * 0.02562 * 6 5 4 34 34 H 0.97007 * 120.00114 * 180.02562 * 10 9 7 35 35 H 0.96995 * 120.00095 * 94.99851 * 15 2 1 36 36 H 1.09001 * 110.48672 * 261.57622 * 20 18 16 37 37 H 1.09006 * 110.48343 * 24.08201 * 20 18 16 38 38 H 1.08996 * 110.76028 * 80.37412 * 21 20 18 39 39 H 1.09008 * 110.75741 * 203.74583 * 21 20 18 40 40 H 1.08997 * 110.48864 * 156.61786 * 22 21 20 41 41 H 1.09006 * 110.48785 * 279.26541 * 22 21 20 42 42 H 1.09009 * 109.46741 * 58.70832 * 24 23 18 43 43 H 1.08998 * 109.47273 * 178.70458 * 24 23 18 44 44 H 1.09001 * 109.47494 * 298.71190 * 24 23 18 45 45 H 1.08998 * 109.46832 * 60.00010 * 25 23 18 46 46 H 1.09004 * 109.46945 * 180.02562 * 25 23 18 47 47 H 1.09002 * 109.47412 * 300.00271 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0532 -1.3044 -2.5096 7 6 5.3952 -1.3404 -2.7795 8 1 6.0937 -0.8597 -2.1105 9 6 5.8579 -1.9948 -3.9128 10 7 5.0068 -2.5811 -4.7278 11 14 7.6886 -2.0446 -4.2806 12 1 8.4000 -2.7158 -3.1632 13 1 7.9205 -2.7989 -5.5386 14 1 8.2009 -0.6590 -4.4321 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8582 1.1584 2.4116 18 6 2.6488 -0.7287 3.5877 19 1 3.2862 -1.5654 3.3016 20 6 3.4349 0.2529 4.4812 21 6 3.0661 -0.1689 5.9250 22 6 1.5672 -0.5389 5.8008 23 6 1.4613 -1.2322 4.4268 24 6 0.1428 -0.8532 3.7493 25 6 1.5466 -2.7502 4.5978 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -0.2618 -2.1370 30 1 1.7516 -1.7715 -1.2056 31 1 3.8531 0.4370 -1.3573 32 1 3.9994 -1.0728 -0.4260 33 1 3.4258 -1.7359 -3.1105 34 1 5.3302 -3.0387 -5.5196 35 1 2.2490 -1.6317 1.1526 36 1 4.5067 0.1459 4.3145 37 1 3.1205 1.2789 4.2891 38 1 3.6527 -1.0331 6.2368 39 1 3.2028 0.6621 6.6172 40 1 1.2760 -1.2238 6.5971 41 1 0.9495 0.3590 5.8237 42 1 0.1097 -1.2879 2.7502 43 1 -0.6912 -1.2339 4.3389 44 1 0.0707 0.2319 3.6760 45 1 2.4772 -3.0071 5.1037 46 1 0.7015 -3.0969 5.1926 47 1 1.5215 -3.2282 3.6185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753991668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = -60.579338 kcal Electronic energy + Delta-G solvation = -23208.853782 eV Core-core repulsion = 20004.392749 eV Total energy + Delta-G solvation = -3204.461032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70933 -38.17858 -36.29660 -34.32668 -32.46154 -31.90521 -30.79745 -29.05719 -27.88538 -27.52005 -24.93397 -24.01523 -22.26689 -21.30049 -20.56726 -20.38560 -18.82429 -17.19369 -16.94185 -16.11296 -15.72694 -14.99300 -14.77694 -14.53347 -13.93003 -13.83780 -13.66371 -13.57484 -13.29809 -13.23091 -12.95964 -12.82654 -12.41685 -12.18407 -11.98559 -11.75877 -11.54287 -11.22825 -11.19089 -11.03066 -10.91899 -10.78304 -10.75654 -10.71251 -10.66404 -10.60067 -10.55338 -10.06445 -9.69711 -9.55876 -8.93061 -8.82936 -6.92364 -5.76637 -3.05365 2.75678 3.30817 3.44239 3.48430 3.49651 4.25360 4.35668 4.49951 4.58060 4.89322 5.02124 5.08231 5.11014 5.15768 5.20232 5.29693 5.32674 5.38814 5.45126 5.46768 5.55709 5.61675 5.70332 5.73067 5.73933 5.77679 5.81046 5.86098 5.93640 5.95615 6.03167 6.08338 6.08818 6.20927 6.23788 6.26997 6.30745 6.36081 6.63553 6.82864 6.89011 7.66109 7.69759 8.37715 8.42523 9.53426 10.11360 10.46153 11.46283 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020848 B = 0.003563 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.702723 B = 7856.830578 C = 8489.649097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.087 0.913 4 C -0.134 4.134 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.935 5.935 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.720 5.720 16 C 0.528 3.472 17 O -0.546 6.546 18 C -0.108 4.108 19 H 0.091 0.909 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.052 4.052 24 C -0.154 4.154 25 C -0.140 4.140 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.383 0.617 34 H 0.256 0.744 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 1.524 20.782 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.212 1.212 15 N -0.371 5.371 16 C 0.315 3.685 17 O -0.423 6.423 18 C -0.130 4.130 19 H 0.109 0.891 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.053 4.053 24 C -0.211 4.211 25 C -0.197 4.197 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.234 0.766 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.259 2.392 20.792 23.308 hybrid contribution 0.965 -0.770 -0.641 1.391 sum -9.294 1.622 20.151 22.250 Atomic orbital electron populations 1.22162 0.95625 1.01859 1.02205 1.20950 0.93439 0.97682 0.83953 0.89500 1.22057 0.98014 1.00735 0.96463 1.20626 0.90416 0.95559 0.90697 1.42365 1.05356 1.64948 1.25161 1.19192 0.83864 1.28543 1.05532 0.91313 1.24736 0.97717 1.00886 0.97640 1.69650 1.32887 1.40646 1.15160 0.86261 0.85107 0.77513 0.77280 1.21269 1.21650 1.21241 1.46221 1.67114 1.14107 1.09662 1.20352 0.76811 0.87110 0.84213 1.90650 1.50642 1.16110 1.84940 1.22113 0.97841 0.99322 0.93704 0.89093 1.22356 0.99251 0.99976 0.93547 1.22464 0.96002 1.00894 0.96623 1.22484 0.96845 1.00150 0.95626 1.21030 0.93953 0.95550 0.94739 1.22143 0.95993 1.02532 1.00433 1.21945 1.01903 0.93907 1.01980 0.92421 0.91682 0.92633 0.90371 0.91452 0.96493 0.96398 0.78335 0.93467 0.76558 0.91375 0.89622 0.91509 0.91409 0.91529 0.91274 0.92145 0.92604 0.91461 0.92292 0.92405 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 37.16 0.35 -1.54 16 2 C 0.14 1.98 2.57 -67.93 -0.17 1.80 16 3 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.13 -2.09 4.87 -26.73 -0.13 -2.22 16 5 C 0.15 3.13 6.15 -4.04 -0.02 3.10 16 6 N -0.73 -18.79 5.60 -59.91 -0.34 -19.12 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 11 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 N -0.72 -9.06 4.10 -53.81 -0.22 -9.28 16 16 C 0.53 7.01 4.67 -10.98 -0.05 6.96 16 17 O -0.55 -8.98 14.54 5.56 0.08 -8.90 16 18 C -0.11 -1.15 2.94 -90.65 -0.27 -1.41 16 19 H 0.09 0.88 7.67 -51.93 -0.40 0.48 16 20 C -0.11 -1.19 6.32 -25.08 -0.16 -1.35 16 21 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16 22 C -0.11 -0.95 5.90 -25.07 -0.15 -1.10 16 23 C -0.05 -0.47 0.94 -153.39 -0.14 -0.62 16 24 C -0.15 -1.52 7.22 37.16 0.27 -1.25 16 25 C -0.14 -1.07 8.15 37.16 0.30 -0.77 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 33 H 0.38 10.21 7.67 -40.82 -0.31 9.90 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.40 4.50 8.60 -40.82 -0.35 4.15 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.07 6.90 -51.93 -0.36 0.71 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.07 0.48 7.84 -51.93 -0.41 0.07 16 41 H 0.07 0.63 7.82 -51.93 -0.41 0.22 16 42 H 0.06 0.62 7.11 -51.92 -0.37 0.25 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.80 6.92 -51.93 -0.36 0.44 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -31.96 367.62 -8.63 -40.59 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -8.80 Total: 8.39 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.59 Total: -7.08 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.17 Total: -56.09 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.96 -8.63 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753991668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.990 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds