Wall clock time and date at job start Tue Mar 31 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47169 * 2 1 4 4 C 1.53003 * 109.47275 * 239.99601 * 2 1 3 5 5 C 1.52993 * 109.47293 * 174.99974 * 4 2 1 6 6 N 1.46496 * 109.47204 * 179.97438 * 5 4 2 7 7 C 1.36940 * 120.00132 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99978 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00077 * 180.02562 * 7 6 5 10 10 N 1.31618 * 119.99853 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00074 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47709 * 89.99391 * 11 9 7 13 13 H 1.48501 * 109.47349 * 209.99884 * 11 9 7 14 14 H 1.48504 * 109.47205 * 329.99134 * 11 9 7 15 15 N 1.46501 * 109.46661 * 119.99897 * 2 1 3 16 16 C 1.34771 * 120.00130 * 274.99627 * 15 2 1 17 17 O 1.21281 * 119.99939 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00427 * 180.02562 * 16 15 2 19 19 C 1.53006 * 109.46544 * 60.00152 * 18 16 15 20 20 C 1.53003 * 109.47036 * 300.00752 * 18 16 15 21 21 C 1.52991 * 109.47232 * 180.02562 * 18 16 15 22 22 C 1.53785 * 113.61284 * 182.84193 * 21 18 16 23 23 C 1.53778 * 87.17354 * 140.02474 * 22 21 18 24 24 C 1.53777 * 87.08317 * 334.52700 * 23 22 21 25 25 H 1.09004 * 109.46618 * 60.00016 * 1 2 3 26 26 H 1.09000 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47246 * 300.00386 * 1 2 3 28 28 H 1.09000 * 109.46954 * 295.00702 * 4 2 1 29 29 H 1.09000 * 109.47023 * 54.99684 * 4 2 1 30 30 H 1.08995 * 109.47482 * 300.00662 * 5 4 2 31 31 H 1.09005 * 109.46832 * 60.00653 * 5 4 2 32 32 H 0.97002 * 119.99921 * 0.02562 * 6 5 4 33 33 H 0.97003 * 119.99976 * 180.02562 * 10 9 7 34 34 H 0.97007 * 120.00115 * 95.00442 * 15 2 1 35 35 H 1.09004 * 109.46549 * 173.37853 * 19 18 16 36 36 H 1.09000 * 109.46987 * 293.37582 * 19 18 16 37 37 H 1.09002 * 109.47099 * 53.37924 * 19 18 16 38 38 H 1.09002 * 109.46710 * 299.99421 * 20 18 16 39 39 H 1.08993 * 109.47473 * 59.99360 * 20 18 16 40 40 H 1.08998 * 109.46561 * 180.02562 * 20 18 16 41 41 H 1.08998 * 112.90895 * 51.59581 * 21 18 16 42 42 H 1.09003 * 113.61470 * 25.43762 * 22 21 18 43 43 H 1.09000 * 113.61294 * 254.61654 * 22 21 18 44 44 H 1.08999 * 113.61378 * 89.07313 * 23 22 21 45 45 H 1.08996 * 113.61546 * 219.97577 * 23 22 21 46 46 H 1.08994 * 113.61994 * 139.97717 * 24 23 22 47 47 H 1.09006 * 113.61291 * 270.80158 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 7 4.0532 -1.3046 -2.5094 7 6 5.3953 -1.3406 -2.7793 8 1 6.0938 -0.8598 -2.1104 9 6 5.8580 -1.9951 -3.9126 10 7 7.1479 -2.0301 -4.1718 11 14 4.6500 -2.8261 -5.0699 12 1 4.2147 -1.8589 -6.1093 13 1 5.3067 -3.9887 -5.7197 14 1 3.4679 -3.2915 -4.3009 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8582 1.1584 2.4117 18 6 2.6498 -0.7285 3.5876 19 6 4.0525 -1.2785 3.3214 20 6 1.7062 -1.8828 3.9315 21 6 2.7006 0.2545 4.7588 22 6 3.2681 -0.3560 6.0512 23 6 4.0016 0.9779 6.2689 24 6 3.9386 1.1712 4.7447 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7516 -1.7716 -1.2055 29 1 1.6054 -0.2619 -2.1370 30 1 3.8533 0.4368 -1.3573 31 1 3.9995 -1.0730 -0.4259 32 1 3.4259 -1.7361 -3.1104 33 1 7.4713 -2.4872 -4.9639 34 1 2.2490 -1.6318 1.1527 35 1 4.4632 -1.6882 4.2443 36 1 3.9978 -2.0641 2.5678 37 1 4.6958 -0.4750 2.9627 38 1 0.7069 -1.4909 4.1210 39 1 1.6696 -2.5831 3.0971 40 1 2.0697 -2.3961 4.8217 41 1 1.7624 0.7900 4.9043 42 1 3.9372 -1.1991 5.8787 43 1 2.5092 -0.5652 6.8052 44 1 3.4185 1.7108 6.8265 45 1 5.0151 0.8613 6.6528 46 1 3.7200 2.1955 4.4430 47 1 4.7916 0.7468 4.2151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753997673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:07 Heat of formation + Delta-G solvation = -24.797505 kcal Electronic energy + Delta-G solvation = -23207.496528 eV Core-core repulsion = 20004.587112 eV Total energy + Delta-G solvation = -3202.909416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76295 -38.69047 -36.49520 -34.55284 -34.21578 -31.74804 -30.60720 -28.27797 -27.72837 -25.86994 -25.41218 -24.16701 -23.14288 -21.37838 -20.78463 -20.10374 -18.54957 -17.61568 -16.88837 -16.48200 -15.50910 -15.18171 -14.98765 -14.56856 -14.26129 -14.09936 -13.73503 -13.36235 -13.25181 -13.12211 -12.89200 -12.63202 -12.54537 -12.30936 -12.05861 -11.96922 -11.78729 -11.53531 -11.45349 -11.30240 -11.23963 -10.88479 -10.73253 -10.53111 -10.46664 -10.40316 -10.17846 -10.15492 -9.60359 -9.47601 -8.98395 -8.87617 -7.24407 -5.77749 -3.13496 2.75703 3.23777 3.35494 3.38461 3.43799 4.37014 4.46186 4.49175 4.57798 4.72016 4.75784 4.83232 4.90339 5.10181 5.12548 5.20679 5.27796 5.37693 5.49525 5.51894 5.54647 5.57906 5.63016 5.64825 5.68317 5.73628 5.78463 5.80791 5.84436 5.93029 5.93649 5.95262 6.03610 6.10695 6.15796 6.19638 6.24481 6.44454 6.56412 6.71021 6.77351 7.61446 7.98667 8.33999 8.41207 9.20312 9.92588 10.12442 11.40742 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.003784 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.366782 B = 7397.429629 C = 8123.634902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.089 0.911 4 C -0.139 4.139 5 C 0.159 3.841 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.719 5.719 16 C 0.525 3.475 17 O -0.541 6.541 18 C -0.073 4.073 19 C -0.147 4.147 20 C -0.138 4.138 21 C -0.082 4.082 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.137 4.137 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.923 1.046 19.555 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.177 4.177 5 C 0.032 3.968 6 N -0.403 5.403 7 C -0.374 4.374 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.371 5.371 16 C 0.311 3.689 17 O -0.418 6.418 18 C -0.076 4.076 19 C -0.204 4.204 20 C -0.196 4.196 21 C -0.101 4.101 22 C -0.175 4.175 23 C -0.181 4.181 24 C -0.175 4.175 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.234 0.766 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.881 1.941 19.598 23.532 hybrid contribution -0.639 -1.115 -1.065 1.668 sum -13.520 0.827 18.533 22.955 Atomic orbital electron populations 1.22155 0.95564 1.01855 1.02255 1.20925 0.93473 0.97766 0.83826 0.89317 1.22112 0.98068 1.00753 0.96800 1.20602 0.90168 0.95955 0.90122 1.42723 1.05315 1.66075 1.26186 1.19064 0.82245 1.29330 1.06792 0.89304 1.24682 0.95610 1.00689 0.98234 1.69706 1.11730 1.48270 1.28538 0.86523 0.80846 0.79449 0.81533 1.21078 1.21731 1.20388 1.46135 1.67180 1.14149 1.09616 1.20488 0.76939 0.87102 0.84340 1.90664 1.50092 1.15963 1.85080 1.20725 0.97150 0.96366 0.93341 1.22024 0.94423 1.01464 1.02508 1.21817 0.98816 0.96682 1.02259 1.22376 0.99198 0.95832 0.92658 1.23044 0.99846 0.97473 0.97158 1.22787 1.00533 0.97662 0.97086 1.23074 0.98155 1.00457 0.95777 0.91685 0.92654 0.92382 0.91507 0.90389 0.95597 0.95561 0.80732 0.93057 0.76560 0.91199 0.91783 0.91448 0.92298 0.92128 0.91366 0.88843 0.89741 0.91778 0.90504 0.91625 0.91356 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.48 37.16 0.35 -1.44 16 2 C 0.14 1.88 2.57 -67.93 -0.17 1.71 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 C -0.14 -2.00 4.87 -26.73 -0.13 -2.13 16 5 C 0.16 3.03 6.15 -4.05 -0.02 3.00 16 6 N -0.76 -17.97 5.41 -59.91 -0.32 -18.30 16 7 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 10 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 11 Si 0.89 22.04 27.74 -169.99 -4.71 17.32 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 15 N -0.72 -8.70 4.33 -53.80 -0.23 -8.94 16 16 C 0.53 6.84 6.41 -10.99 -0.07 6.77 16 17 O -0.54 -8.88 15.47 5.56 0.09 -8.79 16 18 C -0.07 -0.73 0.53 -155.66 -0.08 -0.81 16 19 C -0.15 -1.43 7.31 37.16 0.27 -1.16 16 20 C -0.14 -1.12 8.20 37.16 0.30 -0.82 16 21 C -0.08 -0.83 2.45 -89.67 -0.22 -1.05 16 22 C -0.14 -1.11 6.61 -25.92 -0.17 -1.28 16 23 C -0.14 -1.22 8.08 -25.92 -0.21 -1.43 16 24 C -0.14 -1.45 7.21 -25.78 -0.19 -1.64 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 32 H 0.36 8.26 5.53 -40.82 -0.23 8.03 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.40 4.27 7.57 -40.82 -0.31 3.96 16 35 H 0.07 0.57 6.09 -51.93 -0.32 0.26 16 36 H 0.06 0.61 7.75 -51.93 -0.40 0.21 16 37 H 0.07 0.75 6.48 -51.93 -0.34 0.42 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 40 H 0.07 0.47 7.54 -51.93 -0.39 0.08 16 41 H 0.09 1.06 7.95 -51.93 -0.41 0.65 16 42 H 0.08 0.63 6.14 -51.93 -0.32 0.31 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.92 5.70 -51.93 -0.30 0.62 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -32.87 363.05 -7.97 -40.84 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.44 Total: 8.49 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.59 Total: -7.40 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.22 Total: -55.94 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.87 -7.97 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753997673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.046 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds