Wall clock time and date at job start Tue Mar 31 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47197 * 2 1 4 4 C 1.52992 * 109.47131 * 120.00111 * 2 1 3 5 5 N 1.46510 * 109.47151 * 174.99997 * 4 2 1 6 6 C 1.36931 * 119.99862 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00361 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00015 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99828 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00248 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46890 * 59.99770 * 10 8 6 12 12 H 1.48504 * 109.47074 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47048 * 300.00067 * 10 8 6 14 14 N 1.46498 * 109.47048 * 240.00452 * 2 1 3 15 15 C 1.34773 * 120.00256 * 84.72357 * 14 2 1 16 16 O 1.21280 * 120.00016 * 0.27666 * 15 14 2 17 17 C 1.50708 * 120.00116 * 180.27599 * 15 14 2 18 18 C 1.53001 * 109.46760 * 300.00137 * 17 15 14 19 19 C 1.53001 * 109.46881 * 59.99544 * 17 15 14 20 20 C 1.52996 * 109.47173 * 180.02562 * 17 15 14 21 21 C 1.54893 * 110.75558 * 289.10027 * 20 17 15 22 22 C 1.54262 * 104.19493 * 203.74651 * 21 20 17 23 23 C 1.53881 * 106.60185 * 23.60572 * 22 21 20 24 24 C 1.54266 * 106.59596 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.46892 * 59.99839 * 1 2 3 26 26 H 1.08992 * 109.47190 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46853 * 300.00190 * 1 2 3 28 28 H 1.08996 * 109.47308 * 294.99572 * 4 2 1 29 29 H 1.09003 * 109.47329 * 55.00255 * 4 2 1 30 30 H 0.97000 * 119.99538 * 359.97438 * 5 4 2 31 31 H 0.96999 * 120.00046 * 180.02562 * 9 8 6 32 32 H 0.97005 * 119.99900 * 264.99676 * 14 2 1 33 33 H 1.08998 * 109.47357 * 60.00450 * 18 17 15 34 34 H 1.09008 * 109.46872 * 180.02562 * 18 17 15 35 35 H 1.08993 * 109.47272 * 299.99450 * 18 17 15 36 36 H 1.09005 * 109.46720 * 53.08096 * 19 17 15 37 37 H 1.09007 * 109.46740 * 173.07581 * 19 17 15 38 38 H 1.08991 * 109.47702 * 293.07901 * 19 17 15 39 39 H 1.08997 * 110.67432 * 52.54063 * 20 17 15 40 40 H 1.09000 * 110.48485 * 322.42311 * 21 20 17 41 41 H 1.08995 * 110.48508 * 85.06677 * 21 20 17 42 42 H 1.09005 * 110.02915 * 264.32928 * 22 21 20 43 43 H 1.08997 * 110.07634 * 142.92115 * 22 21 20 44 44 H 1.08996 * 110.03200 * 240.71663 * 23 22 21 45 45 H 1.09004 * 110.06853 * 119.30877 * 23 22 21 46 46 H 1.09001 * 110.48469 * 217.70977 * 24 23 22 47 47 H 1.08998 * 110.60236 * 95.12103 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1838 -1.4388 2.2066 7 1 3.6468 -1.8440 3.0514 8 6 5.5673 -1.5380 2.1513 9 7 6.2218 -1.0438 1.1219 10 14 6.5001 -2.3729 3.5378 11 1 6.0442 -3.7806 3.6637 12 1 7.9549 -2.3488 3.2404 13 1 6.2426 -1.6535 4.8110 14 7 2.0183 -0.6905 -1.1962 15 6 2.1418 -0.0195 -2.3585 16 8 1.8533 1.1572 -2.4129 17 6 2.6382 -0.7314 -3.5906 18 6 4.0419 -1.2819 -3.3306 19 6 1.6923 -1.8855 -3.9286 20 6 2.6850 0.2505 -4.7629 21 6 1.2542 0.6177 -5.2288 22 6 1.4361 1.0622 -6.6948 23 6 2.7314 0.4006 -7.1973 24 6 3.2910 -0.4234 -6.0193 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7517 -0.1583 2.1369 29 1 1.6054 -1.7198 1.2951 30 1 3.9824 -0.4628 0.4315 31 1 7.1886 -1.1134 1.0830 32 1 2.2491 -1.6317 -1.1527 33 1 4.0089 -1.9814 -2.4954 34 1 4.4011 -1.7965 -4.2219 35 1 4.7157 -0.4598 -3.0898 36 1 0.6706 -1.5110 -3.9928 37 1 1.9798 -2.3227 -4.8849 38 1 1.7525 -2.6450 -3.1491 39 1 3.2481 1.1442 -4.4941 40 1 0.5996 -0.2520 -5.1723 41 1 0.8558 1.4358 -4.6288 42 1 1.5264 2.1472 -6.7475 43 1 0.5894 0.7287 -7.2947 44 1 3.4501 1.1645 -7.4939 45 1 2.5138 -0.2547 -8.0408 46 1 4.3792 -0.3648 -5.9957 47 1 2.9672 -1.4618 -6.0895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754270776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:44 Heat of formation + Delta-G solvation = -55.856296 kcal Electronic energy + Delta-G solvation = -23716.159610 eV Core-core repulsion = 20511.903384 eV Total energy + Delta-G solvation = -3204.256226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35335 -38.10028 -36.00095 -34.37941 -33.54032 -31.09642 -29.81799 -28.88654 -27.52304 -27.11118 -25.66915 -23.76318 -22.58765 -21.07325 -20.19208 -20.03321 -18.49483 -17.20116 -16.57627 -16.11124 -15.47473 -15.06574 -14.78884 -14.49518 -14.04227 -13.74317 -13.64894 -13.33332 -13.28676 -12.71033 -12.41903 -12.22990 -12.18780 -12.01455 -11.93341 -11.79378 -11.54629 -11.36355 -11.10061 -10.97145 -10.89106 -10.82117 -10.79366 -10.48375 -10.36594 -10.31214 -10.20962 -10.06481 -9.73661 -9.19094 -8.90514 -8.57588 -6.95853 -5.78144 -3.07735 3.08140 3.42286 3.47099 3.47954 3.59512 4.53765 4.56940 4.62890 4.72255 4.98704 5.05851 5.12200 5.28182 5.40220 5.45282 5.54497 5.54821 5.57134 5.62660 5.65444 5.68854 5.72744 5.78659 5.87204 5.90399 5.95973 6.02036 6.04611 6.09723 6.10307 6.13789 6.21240 6.28055 6.28918 6.41600 6.42650 6.49840 6.54370 6.59089 6.74120 7.03978 7.67223 7.99758 8.39796 8.68413 9.51626 10.07989 10.43915 11.44022 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.004323 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.665456 B = 6476.092085 C = 7348.863634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.133 3.867 3 H 0.085 0.915 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.244 4.244 7 H 0.069 0.931 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.709 5.709 15 C 0.525 3.475 16 O -0.548 6.548 17 C -0.073 4.073 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.064 4.064 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.023 0.977 30 H 0.386 0.614 31 H 0.256 0.744 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.279 -0.755 -14.653 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.103 0.897 4 C 0.016 3.984 5 N -0.376 5.376 6 C -0.375 4.375 7 H 0.087 0.913 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 N -0.360 5.360 15 C 0.311 3.689 16 O -0.426 6.426 17 C -0.076 4.076 18 C -0.198 4.198 19 C -0.201 4.201 20 C -0.083 4.083 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.160 4.160 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.221 0.779 31 H 0.065 0.935 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.437 0.013 -14.521 17.883 hybrid contribution 0.917 -0.777 0.662 1.372 sum -9.519 -0.764 -13.859 16.831 Atomic orbital electron populations 1.22090 0.95708 1.01705 1.01997 1.21205 0.93198 0.97988 0.84825 0.89705 1.20975 0.86876 0.96876 0.93653 1.42346 0.99725 1.70266 1.25253 1.19174 0.89444 1.29608 0.99266 0.91256 1.24732 0.96397 1.01523 0.98035 1.69656 1.07274 1.50684 1.30232 0.86280 0.78998 0.79243 0.81701 1.21296 1.21696 1.21291 1.45993 1.66495 1.14377 1.09138 1.20434 0.76930 0.87054 0.84437 1.90632 1.50645 1.16007 1.85282 1.20732 0.97339 0.96248 0.93312 1.21873 0.93970 1.01768 1.02237 1.21987 0.98927 0.96869 1.02274 1.21893 0.96821 0.97352 0.92228 1.22523 0.96834 1.01562 0.95048 1.22126 0.97269 1.00199 0.96594 1.22114 0.97145 0.99022 0.97850 1.22526 1.00110 0.99306 0.94041 0.92514 0.92698 0.91829 0.95030 0.95916 0.77943 0.93462 0.76297 0.91469 0.91775 0.91728 0.92018 0.91334 0.92117 0.89918 0.91543 0.90842 0.92183 0.92385 0.92134 0.92264 0.91651 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 2 C 0.13 2.27 2.73 -67.94 -0.19 2.09 16 3 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 4 C 0.14 2.83 5.82 -4.04 -0.02 2.81 16 5 N -0.73 -18.12 5.43 -59.91 -0.33 -18.44 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 8 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 9 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 10 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 14 N -0.71 -11.53 4.31 -53.81 -0.23 -11.77 16 15 C 0.53 8.64 6.26 -10.98 -0.07 8.57 16 16 O -0.55 -10.59 14.46 5.56 0.08 -10.51 16 17 C -0.07 -0.96 0.45 -155.66 -0.07 -1.03 16 18 C -0.14 -1.94 8.08 37.16 0.30 -1.64 16 19 C -0.14 -1.54 7.46 37.16 0.28 -1.26 16 20 C -0.06 -0.81 1.84 -88.61 -0.16 -0.97 16 21 C -0.12 -1.46 5.56 -25.07 -0.14 -1.60 16 22 C -0.12 -1.26 6.80 -25.61 -0.17 -1.43 16 23 C -0.12 -1.18 6.80 -25.61 -0.17 -1.35 16 24 C -0.12 -1.27 4.89 -25.06 -0.12 -1.39 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.39 10.21 7.33 -40.82 -0.30 9.91 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.40 6.30 7.58 -40.82 -0.31 5.99 16 33 H 0.07 0.99 7.56 -51.93 -0.39 0.60 16 34 H 0.06 0.74 7.07 -51.92 -0.37 0.37 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.66 6.38 -51.93 -0.33 0.33 16 37 H 0.07 0.64 6.11 -51.93 -0.32 0.32 16 38 H 0.06 0.63 7.76 -51.93 -0.40 0.23 16 39 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 40 H 0.07 0.74 5.58 -51.93 -0.29 0.45 16 41 H 0.07 1.03 7.33 -51.93 -0.38 0.65 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.67 8.01 -51.93 -0.42 0.26 16 47 H 0.07 0.66 6.04 -51.93 -0.31 0.34 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -30.59 359.62 -8.19 -38.78 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -8.40 Total: 12.68 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.44 Total: -6.31 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.17 Total: -57.18 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.59 -8.19 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754270776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.076 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds