Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46938 * 2 1 4 4 C 1.50702 * 109.46947 * 240.00125 * 2 1 3 5 5 O 1.21281 * 119.99733 * 265.54329 * 4 2 1 6 6 N 1.34779 * 120.00038 * 85.55125 * 4 2 1 7 7 C 1.47418 * 125.65011 * 3.10010 * 6 4 2 8 8 C 1.54905 * 104.83187 * 204.16554 * 7 6 4 9 9 C 1.55154 * 101.58479 * 322.99015 * 8 7 6 10 10 C 1.47016 * 125.64483 * 183.14258 * 6 4 2 11 11 H 1.09001 * 109.88362 * 59.33646 * 10 6 4 12 12 C 1.53004 * 109.88622 * 298.31910 * 10 6 4 13 13 N 1.46502 * 109.47190 * 177.15099 * 12 10 6 14 14 C 1.36932 * 119.99939 * 174.77818 * 13 12 10 15 15 H 1.08004 * 119.99819 * 6.19429 * 14 13 12 16 16 C 1.38809 * 120.00305 * 186.19592 * 14 13 12 17 17 N 1.31617 * 120.00312 * 186.92360 * 16 14 13 18 18 Si 1.86801 * 119.99818 * 6.92308 * 16 14 13 19 19 H 1.48501 * 109.47255 * 267.74175 * 18 16 14 20 20 H 1.48509 * 109.47079 * 27.74149 * 18 16 14 21 21 H 1.48495 * 109.47220 * 147.73864 * 18 16 14 22 22 C 1.52997 * 109.47493 * 119.99946 * 2 1 3 23 23 C 1.52992 * 109.47308 * 174.27690 * 22 2 1 24 24 C 1.53010 * 109.46848 * 294.27753 * 22 2 1 25 25 C 1.52998 * 109.47186 * 54.27561 * 22 2 1 26 26 H 1.08996 * 109.47226 * 173.04617 * 1 2 3 27 27 H 1.09003 * 109.47106 * 293.04250 * 1 2 3 28 28 H 1.08997 * 109.47507 * 53.04028 * 1 2 3 29 29 H 1.09005 * 110.36760 * 323.00685 * 7 6 4 30 30 H 1.09000 * 110.37228 * 85.32368 * 7 6 4 31 31 H 1.09000 * 111.00532 * 81.06505 * 8 7 6 32 32 H 1.09004 * 111.00298 * 204.91129 * 8 7 6 33 33 H 1.09000 * 110.72037 * 277.14130 * 9 8 7 34 34 H 1.08998 * 110.72242 * 153.86721 * 9 8 7 35 35 H 1.09003 * 109.46743 * 57.14938 * 12 10 6 36 36 H 1.08994 * 109.46923 * 297.15104 * 12 10 6 37 37 H 0.96998 * 119.99646 * 354.77326 * 13 12 10 38 38 H 0.97000 * 120.00150 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.47176 * 58.85203 * 23 22 2 40 40 H 1.09004 * 109.47343 * 178.85125 * 23 22 2 41 41 H 1.08995 * 109.47593 * 298.84878 * 23 22 2 42 42 H 1.09000 * 109.47020 * 59.99934 * 24 22 2 43 43 H 1.09003 * 109.46495 * 179.97438 * 24 22 2 44 44 H 1.08996 * 109.46935 * 299.99858 * 24 22 2 45 45 H 1.08999 * 109.47022 * 59.99755 * 25 22 2 46 46 H 1.08996 * 109.47213 * 180.02562 * 25 22 2 47 47 H 1.09000 * 109.47244 * 300.00410 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3113 -1.8895 -1.1785 6 7 2.1715 -0.0354 -2.3887 7 6 1.9322 1.4071 -2.5766 8 6 1.6145 1.5632 -4.0847 9 6 2.5779 0.5233 -4.7153 10 6 2.5864 -0.6158 -3.6741 11 1 1.8871 -1.3975 -3.9709 12 6 3.9961 -1.1980 -3.5515 13 7 4.3737 -1.8337 -4.8163 14 6 5.6381 -2.3328 -4.9810 15 1 6.3251 -2.3487 -4.1477 16 6 6.0369 -2.8182 -6.2187 17 7 7.1999 -3.4213 -6.3455 18 14 4.9230 -2.6155 -7.7045 19 1 4.0595 -3.8157 -7.8432 20 1 4.0722 -1.4117 -7.5248 21 1 5.7517 -2.4580 -8.9266 22 6 2.0401 -0.7212 1.2492 23 6 3.5632 -0.8469 1.1793 24 6 1.6509 0.0784 2.4943 25 6 1.4160 -2.1162 1.3233 26 1 -0.3633 -1.0201 -0.1244 27 1 -0.3633 0.4023 0.9457 28 1 -0.3634 0.6179 -0.8211 29 1 1.0838 1.7325 -1.9745 30 1 2.8241 1.9768 -2.3159 31 1 0.5751 1.3096 -4.2933 32 1 1.8461 2.5706 -4.4305 33 1 3.5761 0.9447 -4.8341 34 1 2.1914 0.1694 -5.6711 35 1 4.0147 -1.9393 -2.7525 36 1 4.7006 -0.3987 -3.3220 37 1 3.7279 -1.9010 -5.5369 38 1 7.4788 -3.7601 -7.2106 39 1 4.0068 0.1461 1.1060 40 1 3.9286 -1.3426 2.0788 41 1 3.8396 -1.4339 0.3035 42 1 0.5657 0.1679 2.5441 43 1 2.0139 -0.4357 3.3843 44 1 2.0954 1.0722 2.4415 45 1 1.6932 -2.6858 0.4362 46 1 1.7791 -2.6298 2.2134 47 1 0.3309 -2.0266 1.3730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754612586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = -32.517921 kcal Electronic energy + Delta-G solvation = -23940.046141 eV Core-core repulsion = 20736.801943 eV Total energy + Delta-G solvation = -3203.244198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61991 -38.41293 -36.34107 -34.67041 -32.22044 -31.44513 -30.67772 -29.07602 -27.42980 -27.19596 -25.34733 -24.57758 -22.79275 -21.87179 -20.87551 -19.42870 -18.23313 -17.53602 -16.94280 -16.38180 -15.17878 -14.94723 -14.66619 -14.40432 -14.15301 -13.91213 -13.72278 -13.59378 -13.08194 -12.92399 -12.77420 -12.64890 -12.31335 -12.24178 -12.08524 -11.85730 -11.72753 -11.60550 -11.32826 -11.17303 -11.15153 -10.98204 -10.84046 -10.64972 -10.56731 -10.52787 -10.45895 -10.16994 -9.55038 -9.19126 -8.77871 -8.45296 -7.15511 -5.72198 -3.06909 2.79358 3.04515 3.40601 3.43175 3.48358 4.37808 4.49700 4.54233 4.63941 4.71291 4.84621 4.90577 5.08324 5.15202 5.23000 5.30262 5.31895 5.36745 5.48437 5.56156 5.57248 5.57303 5.64268 5.66948 5.68659 5.78263 5.83084 5.85050 5.88926 5.92414 5.98175 6.04357 6.10170 6.12736 6.23703 6.31557 6.44859 6.47796 6.66914 6.76140 6.97209 7.70167 8.05869 8.39454 8.46949 9.26290 9.98138 10.18785 11.46422 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.004622 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.374377 B = 6056.284065 C = 6853.543266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.533 3.467 5 O -0.520 6.520 6 N -0.612 5.612 7 C 0.099 3.901 8 C -0.134 4.134 9 C -0.125 4.125 10 C 0.127 3.873 11 H 0.073 0.927 12 C 0.150 3.850 13 N -0.750 5.750 14 C -0.239 4.239 15 H 0.088 0.912 16 C 0.004 3.996 17 N -0.934 5.934 18 Si 0.880 3.120 19 H -0.285 1.285 20 H -0.275 1.275 21 H -0.291 1.291 22 C -0.048 4.048 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.160 4.160 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.358 0.642 38 H 0.259 0.741 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.046 0.954 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.465 13.386 13.800 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.104 0.896 4 C 0.322 3.678 5 O -0.396 6.396 6 N -0.347 5.347 7 C -0.024 4.024 8 C -0.172 4.172 9 C -0.163 4.163 10 C 0.023 3.977 11 H 0.091 0.909 12 C 0.023 3.977 13 N -0.395 5.395 14 C -0.369 4.369 15 H 0.106 0.894 16 C -0.191 4.191 17 N -0.582 5.582 18 Si 0.710 3.290 19 H -0.212 1.212 20 H -0.200 1.200 21 H -0.218 1.218 22 C -0.048 4.048 23 C -0.208 4.208 24 C -0.199 4.199 25 C -0.216 4.216 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.190 0.810 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.113 0.887 46 H 0.065 0.935 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.078 12.648 13.968 24.771 hybrid contribution -0.628 0.195 -1.185 1.356 sum -16.706 12.843 12.783 24.646 Atomic orbital electron populations 1.21824 0.93004 1.02936 1.02307 1.21337 0.97394 1.00110 0.92954 0.89569 1.20268 0.77442 0.87092 0.83039 1.90628 1.49651 1.15780 1.83508 1.48589 1.67640 1.09291 1.09164 1.22334 1.00752 0.82084 0.97240 1.22788 1.00121 1.00131 0.94151 1.22701 1.00704 0.94964 0.97901 1.21831 0.97817 0.95698 0.82317 0.90893 1.20962 0.90925 0.95706 0.90144 1.42496 1.12647 1.71437 1.12958 1.19030 0.88933 1.32230 0.96684 0.89387 1.24687 0.96531 1.00640 0.97253 1.69721 1.21110 1.43383 1.23955 0.86579 0.80447 0.77999 0.84016 1.21190 1.20042 1.21780 1.20309 0.96104 0.95881 0.92520 1.22011 0.94029 1.01605 1.03184 1.21943 1.01171 0.99649 0.97142 1.22261 0.99476 0.96014 1.03881 0.91598 0.91247 0.92476 0.90803 0.91320 0.90860 0.89969 0.89700 0.90278 0.93970 0.95466 0.80981 0.93119 0.93333 0.92710 0.90778 0.92527 0.92455 0.92847 0.88673 0.93517 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.30 37.16 0.31 -0.95 16 2 C -0.10 -1.03 1.39 -91.77 -0.13 -1.16 16 3 H 0.09 0.80 7.29 -51.93 -0.38 0.42 16 4 C 0.53 7.76 5.90 -10.98 -0.06 7.70 16 5 O -0.52 -9.53 10.95 5.56 0.06 -9.47 16 6 N -0.61 -8.51 3.06 -163.02 -0.50 -9.01 16 7 C 0.10 0.99 6.34 -2.53 -0.02 0.98 16 8 C -0.13 -1.31 7.08 -24.59 -0.17 -1.48 16 9 C -0.12 -1.73 6.13 -24.90 -0.15 -1.88 16 10 C 0.13 2.10 2.96 -66.95 -0.20 1.90 16 11 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.15 3.20 5.63 -4.04 -0.02 3.17 16 13 N -0.75 -18.66 5.14 -59.91 -0.31 -18.97 16 14 C -0.24 -7.05 10.46 -15.06 -0.16 -7.21 16 15 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 16 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 17 N -0.93 -30.08 13.97 55.49 0.78 -29.31 16 18 Si 0.88 22.37 27.59 -169.99 -4.69 17.68 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.27 -6.47 6.79 56.52 0.38 -6.08 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 C -0.05 -0.52 0.54 -154.51 -0.08 -0.60 16 23 C -0.15 -1.89 8.08 37.15 0.30 -1.59 16 24 C -0.14 -1.19 8.25 37.16 0.31 -0.88 16 25 C -0.16 -1.91 7.73 37.16 0.29 -1.62 16 26 H 0.07 0.66 6.76 -51.93 -0.35 0.31 16 27 H 0.07 0.49 6.30 -51.93 -0.33 0.16 16 28 H 0.06 0.45 7.27 -51.93 -0.38 0.07 16 29 H 0.07 0.57 6.60 -51.93 -0.34 0.23 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.28 7.80 -51.93 -0.41 0.88 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.04 1.01 6.67 -51.93 -0.35 0.66 16 36 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 37 H 0.36 8.55 5.68 -40.82 -0.23 8.31 16 38 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.17 6.05 -51.93 -0.31 0.85 16 42 H 0.06 0.42 6.45 -51.93 -0.33 0.08 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 1.44 5.28 -51.93 -0.27 1.17 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.51 6.50 -51.93 -0.34 0.17 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -33.69 350.53 -7.51 -41.21 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.24 Total: 6.16 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 0.11 Total: -3.58 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.03 Total: -57.28 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.06 Total: -9.47 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.69 Total: 17.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.69 -7.51 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754612586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.691 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds