Wall clock time and date at job start Tue Mar 31 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46694 * 2 1 4 4 C 1.52998 * 109.47102 * 239.99746 * 2 1 3 5 5 N 1.46492 * 109.47133 * 185.00293 * 4 2 1 6 6 C 1.46500 * 120.00092 * 269.99942 * 5 4 2 7 7 C 1.34783 * 120.00243 * 89.99551 * 5 4 2 8 8 O 1.21279 * 119.99873 * 0.02562 * 7 5 4 9 9 C 1.50699 * 119.99993 * 179.97438 * 7 5 4 10 10 C 1.53003 * 109.47202 * 180.02562 * 9 7 5 11 11 C 1.52998 * 110.05489 * 58.58041 * 10 9 7 12 12 C 1.53869 * 110.03485 * 180.02562 * 10 9 7 13 13 C 1.54270 * 106.63967 * 119.25869 * 12 10 9 14 14 C 1.55005 * 104.13720 * 23.62421 * 13 12 10 15 15 C 1.54268 * 110.02859 * 297.17152 * 10 9 7 16 16 N 1.46499 * 109.46801 * 119.99677 * 2 1 3 17 17 C 1.36936 * 120.00256 * 274.99779 * 16 2 1 18 18 H 1.07997 * 119.99645 * 0.02562 * 17 16 2 19 19 C 1.38806 * 120.00263 * 180.02562 * 17 16 2 20 20 N 1.31620 * 120.00060 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00177 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47300 * 59.99524 * 21 19 17 23 23 H 1.48502 * 109.47213 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46760 * 299.99707 * 21 19 17 25 25 H 1.09004 * 109.46890 * 60.00097 * 1 2 3 26 26 H 1.09004 * 109.47278 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47362 * 300.00750 * 1 2 3 28 28 H 1.09000 * 109.47559 * 64.99810 * 4 2 1 29 29 H 1.09006 * 109.47193 * 305.00035 * 4 2 1 30 30 H 1.09001 * 109.47182 * 269.99696 * 6 5 4 31 31 H 1.09001 * 109.46889 * 30.00121 * 6 5 4 32 32 H 1.08997 * 109.47346 * 149.99731 * 6 5 4 33 33 H 1.09003 * 109.47172 * 60.00477 * 9 7 5 34 34 H 1.08997 * 109.47621 * 300.00205 * 9 7 5 35 35 H 1.08998 * 109.47417 * 181.41792 * 11 10 9 36 36 H 1.08995 * 109.47912 * 301.42187 * 11 10 9 37 37 H 1.09003 * 109.46563 * 61.42261 * 11 10 9 38 38 H 1.09002 * 110.03268 * 238.56956 * 12 10 9 39 39 H 1.08995 * 110.03391 * 359.95262 * 12 10 9 40 40 H 1.08998 * 110.48170 * 142.31277 * 13 12 10 41 41 H 1.08998 * 110.48753 * 264.95665 * 13 12 10 42 42 H 1.09001 * 110.74691 * 203.73447 * 14 13 12 43 43 H 1.09005 * 110.92280 * 80.43999 * 14 13 12 44 44 H 1.09003 * 110.49208 * 335.77788 * 15 10 9 45 45 H 1.08998 * 110.48781 * 98.29484 * 15 10 9 46 46 H 0.97008 * 120.00085 * 94.99987 * 16 2 1 47 47 H 0.97001 * 120.00033 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7612 7 6 4.0757 -1.8988 -0.6114 8 8 3.3850 -2.7768 -0.1392 9 6 5.5776 -2.0072 -0.5515 10 6 5.9674 -3.3094 0.1508 11 6 5.3775 -4.5062 -0.5979 12 6 7.4995 -3.4331 0.2196 13 6 7.8714 -3.4901 1.7158 14 6 6.5826 -4.0042 2.4068 15 6 5.4609 -3.2960 1.6079 16 7 2.0183 -0.6905 1.1962 17 6 2.1491 -0.0074 2.3758 18 1 1.8919 1.0404 2.4243 19 6 2.6122 -0.6616 3.5091 20 7 2.9252 -1.9386 3.4501 21 14 2.7900 0.2702 5.1183 22 1 1.4673 0.8061 5.5287 23 1 3.3001 -0.6479 6.1681 24 1 3.7445 1.3933 4.9371 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7517 -0.1585 -2.1370 29 1 1.6054 -1.7199 -1.2951 30 1 4.5425 0.0090 -2.8073 31 1 3.8091 1.1865 -1.6918 32 1 5.2722 0.2951 -1.2091 33 1 5.9812 -1.1600 0.0031 34 1 5.9827 -2.0053 -1.5634 35 1 5.6396 -5.4265 -0.0759 36 1 4.2927 -4.4093 -0.6410 37 1 5.7801 -4.5356 -1.6104 38 1 7.8233 -4.3458 -0.2807 39 1 7.9655 -2.5658 -0.2480 40 1 8.6952 -4.1852 1.8778 41 1 8.1311 -2.4971 2.0824 42 1 6.5598 -3.7033 3.4542 43 1 6.4975 -5.0871 2.3156 44 1 5.3319 -2.2716 1.9576 45 1 4.5244 -3.8473 1.6914 46 1 2.2490 -1.6318 1.1527 47 1 3.2492 -2.3957 4.2419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755585461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:54 Heat of formation + Delta-G solvation = -37.828896 kcal Electronic energy + Delta-G solvation = -24721.573715 eV Core-core repulsion = 21518.099216 eV Total energy + Delta-G solvation = -3203.474499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.86414 -37.89006 -35.72833 -34.24983 -32.01016 -31.54443 -28.68766 -28.13239 -27.80567 -26.81443 -25.12907 -23.93292 -23.38507 -20.21933 -20.01042 -18.89192 -17.91644 -17.15669 -16.24843 -15.65094 -15.24876 -14.85795 -14.41995 -14.33438 -13.70164 -13.38630 -13.27358 -13.00651 -12.76670 -12.67425 -12.22767 -12.15023 -12.06199 -11.85761 -11.37806 -11.29253 -11.21075 -11.00784 -10.76053 -10.73562 -10.59428 -10.47031 -10.31764 -10.21098 -10.10158 -9.95962 -9.88384 -9.74081 -9.45572 -8.81291 -8.71614 -7.92798 -6.72070 -5.53798 -2.82691 3.38170 3.49911 3.55352 3.55846 3.64320 4.71671 4.92793 5.01934 5.11990 5.28843 5.40691 5.55205 5.57937 5.60950 5.64859 5.71008 5.81224 5.88228 5.90869 5.95680 5.98001 6.02713 6.09829 6.11515 6.17245 6.20673 6.24542 6.35688 6.36543 6.43590 6.47125 6.59702 6.68232 6.75670 6.81220 6.89399 6.92039 7.07958 7.22523 7.26486 7.48765 7.83888 8.03169 8.62315 8.98502 9.75054 10.38343 10.78989 11.65063 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.008299 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.463490 B = 3373.183559 C = 4932.490967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 H 0.040 0.960 4 C 0.111 3.889 5 N -0.613 5.613 6 C 0.085 3.915 7 C 0.523 3.477 8 O -0.508 6.508 9 C -0.122 4.122 10 C -0.049 4.049 11 C -0.147 4.147 12 C -0.115 4.115 13 C -0.123 4.123 14 C -0.126 4.126 15 C -0.092 4.092 16 N -0.719 5.719 17 C -0.240 4.240 18 H 0.060 0.940 19 C -0.008 4.008 20 N -0.910 5.910 21 Si 0.894 3.106 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.290 1.290 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.400 0.600 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 -0.086 -11.698 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.058 0.942 4 C -0.013 4.013 5 N -0.347 5.347 6 C -0.059 4.059 7 C 0.312 3.688 8 O -0.382 6.382 9 C -0.162 4.162 10 C -0.049 4.049 11 C -0.204 4.204 12 C -0.153 4.153 13 C -0.161 4.161 14 C -0.164 4.164 15 C -0.129 4.129 16 N -0.365 5.365 17 C -0.372 4.372 18 H 0.078 0.922 19 C -0.205 4.205 20 N -0.558 5.558 21 Si 0.726 3.274 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.218 1.218 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.239 0.761 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.187 -0.493 -11.308 13.408 hybrid contribution 0.213 0.604 0.996 1.184 sum 7.400 0.111 -10.312 12.693 Atomic orbital electron populations 1.22418 0.99378 1.00863 0.99758 1.20619 0.91835 0.95466 0.87790 0.94204 1.21778 0.79708 1.01860 0.97919 1.47642 1.06456 1.21240 1.59401 1.21641 0.95747 0.91190 0.97278 1.20366 0.90353 0.81270 0.76843 1.90593 1.64548 1.39125 1.43976 1.21801 0.93286 0.99841 1.01291 1.20946 0.93539 0.93255 0.97161 1.22131 1.03968 0.96643 0.97643 1.22278 0.95444 1.00882 0.96646 1.22358 0.97741 1.00568 0.95403 1.22517 0.95095 0.99421 0.99329 1.22316 0.97697 1.02364 0.90532 1.42689 1.77601 1.11793 1.04446 1.19101 1.36801 0.93500 0.87810 0.92151 1.24660 1.02654 0.95918 0.97263 1.69715 1.50078 1.07920 1.28051 0.86489 0.77512 0.78663 0.84757 1.21706 1.21884 1.21763 0.94793 0.93442 0.92781 0.91564 0.90431 0.93599 0.91525 0.91479 0.89447 0.90539 0.93511 0.89430 0.94600 0.92215 0.92462 0.92704 0.92084 0.92145 0.92568 0.90660 0.89734 0.76107 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.49 37.16 0.35 -2.70 16 2 C 0.15 3.15 3.20 -67.93 -0.22 2.93 16 3 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 4 C 0.11 1.90 5.14 -4.05 -0.02 1.88 16 5 N -0.61 -10.24 2.77 -181.58 -0.50 -10.75 16 6 C 0.09 1.06 10.24 59.85 0.61 1.68 16 7 C 0.52 9.75 6.43 -10.98 -0.07 9.68 16 8 O -0.51 -11.24 9.47 5.56 0.05 -11.18 16 9 C -0.12 -1.90 2.96 -27.88 -0.08 -1.98 16 10 C -0.05 -0.78 0.63 -153.39 -0.10 -0.87 16 11 C -0.15 -2.32 7.83 37.16 0.29 -2.03 16 12 C -0.11 -1.54 6.11 -25.61 -0.16 -1.70 16 13 C -0.12 -1.72 6.84 -25.01 -0.17 -1.90 16 14 C -0.13 -2.10 6.91 -24.69 -0.17 -2.27 16 15 C -0.09 -1.79 4.73 -25.09 -0.12 -1.91 16 16 N -0.72 -18.44 4.52 -53.43 -0.24 -18.68 16 17 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 18 H 0.06 1.68 7.83 -52.49 -0.41 1.26 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.91 -27.05 13.06 55.49 0.72 -26.32 16 21 Si 0.89 22.75 29.55 -169.99 -5.02 17.72 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.08 1.45 7.42 -51.93 -0.39 1.06 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 33 H 0.09 1.37 7.38 -51.93 -0.38 0.99 16 34 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.62 5.41 -51.93 -0.28 1.33 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 39 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.74 7.84 -51.93 -0.41 1.33 16 45 H 0.08 1.95 7.15 -51.93 -0.37 1.58 16 46 H 0.40 11.03 5.02 -40.82 -0.20 10.83 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -31.22 358.53 -8.30 -39.51 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -8.62 Total: 10.72 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.09 Total: -6.43 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.02 Total: -55.75 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.05 Total: -11.18 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.22 -8.30 -39.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755585461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.686 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds