Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47105 * 2 1 4 4 C 1.52997 * 109.47049 * 119.99816 * 2 1 3 5 5 N 1.46506 * 109.47289 * 174.99938 * 4 2 1 6 6 C 1.46493 * 119.99811 * 89.99895 * 5 4 2 7 7 C 1.34778 * 120.00058 * 270.00324 * 5 4 2 8 8 O 1.21279 * 119.99362 * 359.97438 * 7 5 4 9 9 C 1.50696 * 119.99888 * 179.97438 * 7 5 4 10 10 C 1.53004 * 109.46881 * 179.97438 * 9 7 5 11 11 C 1.53003 * 110.01796 * 58.60744 * 10 9 7 12 12 C 1.54263 * 110.03138 * 297.16564 * 10 9 7 13 13 C 1.54884 * 104.19532 * 217.10480 * 12 10 9 14 14 C 1.54889 * 102.75016 * 37.94773 * 13 12 10 15 15 C 1.53878 * 110.03088 * 180.02562 * 10 9 7 16 16 N 1.46500 * 109.47196 * 240.00028 * 2 1 3 17 17 C 1.36935 * 119.99902 * 84.99926 * 16 2 1 18 18 H 1.08001 * 120.00292 * 0.02562 * 17 16 2 19 19 C 1.38817 * 119.99890 * 179.97438 * 17 16 2 20 20 N 1.31617 * 119.99688 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00063 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47048 * 60.00541 * 21 19 17 23 23 H 1.48503 * 109.47165 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47374 * 300.00437 * 21 19 17 25 25 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47137 * 300.00553 * 1 2 3 27 27 H 1.09000 * 109.46959 * 60.00032 * 1 2 3 28 28 H 1.09001 * 109.47289 * 54.99809 * 4 2 1 29 29 H 1.09004 * 109.47261 * 295.00065 * 4 2 1 30 30 H 1.09006 * 109.47498 * 90.00412 * 6 5 4 31 31 H 1.09006 * 109.47571 * 210.00074 * 6 5 4 32 32 H 1.09005 * 109.47727 * 330.00531 * 6 5 4 33 33 H 1.08997 * 109.47440 * 299.99997 * 9 7 5 34 34 H 1.09001 * 109.47288 * 59.99909 * 9 7 5 35 35 H 1.09004 * 109.46695 * 60.70097 * 11 10 9 36 36 H 1.08997 * 109.47036 * 180.69851 * 11 10 9 37 37 H 1.08992 * 109.46780 * 300.70342 * 11 10 9 38 38 H 1.08997 * 110.48841 * 335.78827 * 12 10 9 39 39 H 1.09004 * 110.49013 * 98.42742 * 12 10 9 40 40 H 1.08998 * 110.76008 * 279.62701 * 13 12 10 41 41 H 1.09000 * 110.75501 * 156.25752 * 13 12 10 42 42 H 1.09002 * 110.48920 * 203.38177 * 14 13 12 43 43 H 1.08994 * 110.60474 * 80.78883 * 14 13 12 44 44 H 1.09000 * 110.02994 * 238.56784 * 15 10 9 45 45 H 1.09003 * 110.02937 * 359.94627 * 15 10 9 46 46 H 0.96994 * 119.99416 * 265.00201 * 16 2 1 47 47 H 0.97006 * 119.99824 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.3343 0.2340 1.7613 7 6 4.0758 -1.8987 0.6116 8 8 3.3850 -2.7767 0.1396 9 6 5.5777 -2.0066 0.5508 10 6 5.9674 -3.3090 -0.1512 11 6 5.3747 -3.3415 -1.5614 12 6 5.4641 -4.5190 0.6627 13 6 6.5873 -5.5742 0.5083 14 6 7.8740 -4.7131 0.5539 15 6 7.4996 -3.4327 -0.2198 16 7 2.0184 -0.6906 -1.1962 17 6 2.1491 -0.0075 -2.3757 18 1 1.8927 1.0405 -2.4241 19 6 2.6124 -0.6617 -3.5090 20 7 2.9254 -1.9387 -3.4498 21 14 2.7901 0.2699 -5.1182 22 1 3.7446 1.3931 -4.9371 23 1 3.2992 -0.6485 -6.1683 24 1 1.4674 0.8057 -5.5287 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -1.7197 1.2952 29 1 1.7516 -0.1582 2.1370 30 1 4.5425 0.0093 2.8074 31 1 5.2723 0.2953 1.2093 32 1 3.8090 1.1867 1.6919 33 1 5.9806 -1.1595 -0.0043 34 1 5.9834 -2.0040 1.5625 35 1 5.7657 -2.5041 -2.1392 36 1 5.6472 -4.2778 -2.0485 37 1 4.2891 -3.2659 -1.5010 38 1 5.3370 -4.2476 1.7107 39 1 4.5283 -4.8946 0.2488 40 1 6.5025 -6.0918 -0.4472 41 1 6.5676 -6.2833 1.3359 42 1 8.6969 -5.2303 0.0605 43 1 8.1384 -4.4728 1.5836 44 1 7.8213 -3.5166 -1.2579 45 1 7.9655 -2.5644 0.2462 46 1 2.2490 -1.6317 -1.1525 47 1 3.2488 -2.3960 -4.2419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755585462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = -38.322110 kcal Electronic energy + Delta-G solvation = -24555.214118 eV Core-core repulsion = 21351.718232 eV Total energy + Delta-G solvation = -3203.495887 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.89116 -37.98733 -35.73877 -34.25973 -32.07912 -31.51638 -28.68233 -28.41929 -27.66919 -26.79273 -25.02060 -24.04784 -23.34982 -20.46271 -20.02785 -18.92058 -17.97379 -17.15427 -16.27966 -15.71542 -15.20163 -14.97757 -14.51885 -14.41450 -13.68677 -13.40694 -13.32294 -12.97650 -12.85992 -12.59360 -12.23185 -12.15061 -11.97413 -11.84495 -11.38904 -11.26256 -11.11627 -11.01610 -10.89389 -10.74977 -10.65808 -10.60590 -10.45877 -10.29294 -10.05439 -10.00866 -9.95058 -9.88207 -9.45104 -8.77253 -8.70073 -7.93971 -6.72892 -5.54945 -2.83445 3.37277 3.49954 3.55229 3.55907 3.64695 4.71366 4.83015 4.90833 5.01074 5.20535 5.39621 5.47125 5.56481 5.58877 5.62800 5.70631 5.72763 5.80301 5.87282 5.89027 5.90320 5.95118 6.04799 6.09522 6.11578 6.13655 6.17982 6.31841 6.33193 6.35636 6.47168 6.56795 6.64216 6.75101 6.78819 6.88529 6.91600 7.04003 7.06425 7.24414 7.74776 7.84344 8.04791 8.62227 8.98920 9.74379 10.37469 10.77861 11.64359 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.006857 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.689645 B = 4082.427035 C = 5312.874883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.040 0.960 4 C 0.111 3.889 5 N -0.613 5.613 6 C 0.085 3.915 7 C 0.523 3.477 8 O -0.509 6.509 9 C -0.122 4.122 10 C -0.045 4.045 11 C -0.143 4.143 12 C -0.104 4.104 13 C -0.127 4.127 14 C -0.122 4.122 15 C -0.118 4.118 16 N -0.719 5.719 17 C -0.239 4.239 18 H 0.061 0.939 19 C -0.009 4.009 20 N -0.913 5.913 21 Si 0.896 3.104 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.290 1.290 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.399 0.601 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.515 -0.786 12.956 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.058 0.942 4 C -0.013 4.013 5 N -0.347 5.347 6 C -0.059 4.059 7 C 0.312 3.688 8 O -0.384 6.384 9 C -0.162 4.162 10 C -0.046 4.046 11 C -0.200 4.200 12 C -0.142 4.142 13 C -0.164 4.164 14 C -0.160 4.160 15 C -0.156 4.156 16 N -0.365 5.365 17 C -0.371 4.371 18 H 0.079 0.921 19 C -0.206 4.206 20 N -0.560 5.560 21 Si 0.728 3.272 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.217 1.217 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.134 0.866 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.238 0.762 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.183 -1.185 12.554 14.513 hybrid contribution 0.245 0.632 -1.028 1.231 sum 7.428 -0.553 11.527 13.724 Atomic orbital electron populations 1.22416 0.99351 1.00880 0.99773 1.20624 0.91850 0.95479 0.87773 0.94176 1.21783 0.79700 1.01877 0.97917 1.47645 1.06462 1.21203 1.59417 1.21644 0.95754 0.91189 0.97279 1.20361 0.90346 0.81241 0.76863 1.90594 1.64587 1.39540 1.43678 1.21800 0.93292 0.99938 1.01199 1.20946 0.93446 0.92837 0.97353 1.22129 1.06407 0.99368 0.92059 1.22402 0.98556 0.94468 0.98773 1.22518 0.95208 0.97568 1.01118 1.22319 0.97523 0.96393 0.99752 1.22312 0.95630 0.97221 1.00394 1.42685 1.77611 1.11759 1.04481 1.19109 1.36729 0.93502 0.87783 0.92099 1.24668 1.02635 0.95934 0.97358 1.69690 1.50205 1.08005 1.28109 0.86456 0.77512 0.78618 0.84632 1.21766 1.21892 1.21674 0.93429 0.94771 0.92775 0.90407 0.91549 0.93599 0.91476 0.91515 0.89519 0.90420 0.93868 0.94749 0.86634 0.92912 0.90298 0.91682 0.92380 0.92391 0.92243 0.91716 0.92354 0.76191 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.49 37.16 0.35 -2.70 16 2 C 0.15 3.15 3.20 -67.93 -0.22 2.93 16 3 H 0.04 0.83 8.08 -51.92 -0.42 0.41 16 4 C 0.11 1.90 5.14 -4.04 -0.02 1.88 16 5 N -0.61 -10.27 2.77 -181.57 -0.50 -10.77 16 6 C 0.09 1.06 10.24 59.84 0.61 1.68 16 7 C 0.52 9.80 6.43 -10.99 -0.07 9.73 16 8 O -0.51 -11.31 9.47 5.56 0.05 -11.26 16 9 C -0.12 -1.91 2.96 -27.88 -0.08 -1.99 16 10 C -0.05 -0.73 0.63 -153.39 -0.10 -0.83 16 11 C -0.14 -2.90 7.83 37.16 0.29 -2.60 16 12 C -0.10 -1.61 4.74 -25.08 -0.12 -1.73 16 13 C -0.13 -1.64 6.91 -24.74 -0.17 -1.81 16 14 C -0.12 -1.44 6.83 -25.10 -0.17 -1.61 16 15 C -0.12 -1.59 6.11 -25.64 -0.16 -1.74 16 16 N -0.72 -18.47 4.52 -53.42 -0.24 -18.71 16 17 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 18 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.91 -27.31 12.95 55.49 0.72 -26.59 16 21 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.46 7.42 -51.93 -0.39 1.07 16 29 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 32 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.09 1.37 7.40 -51.93 -0.38 0.98 16 34 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.12 2.82 5.31 -51.93 -0.28 2.54 16 38 H 0.05 0.77 7.84 -51.93 -0.41 0.37 16 39 H 0.08 1.42 7.15 -51.93 -0.37 1.05 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.90 7.67 -51.93 -0.40 0.51 16 45 H 0.06 0.70 7.67 -51.93 -0.40 0.31 16 46 H 0.40 11.03 5.02 -40.82 -0.20 10.82 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -31.45 358.32 -8.30 -39.76 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.61 Total: 10.44 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.09 Total: -6.06 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.03 Total: -56.07 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.05 Total: -11.26 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.45 -8.30 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755585462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.435 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds