Wall clock time and date at job start Tue Mar 31 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47464 * 2 1 4 4 C 1.53005 * 109.46760 * 119.99789 * 2 1 3 5 5 N 1.46509 * 109.46917 * 174.99829 * 4 2 1 6 6 C 1.46491 * 119.99790 * 90.00002 * 5 4 2 7 7 C 1.34773 * 119.99927 * 270.00107 * 5 4 2 8 8 O 1.21277 * 120.00179 * 2.57293 * 7 5 4 9 9 C 1.50700 * 120.00084 * 182.57355 * 7 5 4 10 10 C 1.53004 * 109.46862 * 50.90139 * 9 7 5 11 11 C 1.52997 * 109.47374 * 290.90743 * 9 7 5 12 12 C 1.53005 * 109.46625 * 299.99930 * 11 9 7 13 13 C 1.53001 * 109.46916 * 299.99640 * 12 11 9 14 14 C 1.53005 * 109.47018 * 60.00490 * 13 12 11 15 15 C 1.52997 * 109.46702 * 299.99491 * 14 13 12 16 16 N 1.46499 * 109.47194 * 239.99736 * 2 1 3 17 17 C 1.36933 * 119.99917 * 85.00245 * 16 2 1 18 18 H 1.07996 * 119.99913 * 0.02562 * 17 16 2 19 19 C 1.38814 * 119.99655 * 179.97438 * 17 16 2 20 20 N 1.31612 * 120.00394 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99502 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47118 * 90.00183 * 21 19 17 23 23 H 1.48502 * 109.46876 * 209.99979 * 21 19 17 24 24 H 1.48500 * 109.47284 * 329.99812 * 21 19 17 25 25 H 1.09004 * 109.46996 * 300.00608 * 1 2 3 26 26 H 1.09000 * 109.47020 * 59.99912 * 1 2 3 27 27 H 1.08991 * 109.47318 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47013 * 55.00446 * 4 2 1 29 29 H 1.08998 * 109.47531 * 294.99717 * 4 2 1 30 30 H 1.09010 * 109.47345 * 84.19744 * 6 5 4 31 31 H 1.09000 * 109.47587 * 204.19271 * 6 5 4 32 32 H 1.09004 * 109.47781 * 324.19703 * 6 5 4 33 33 H 1.08998 * 109.46902 * 60.00156 * 10 9 7 34 34 H 1.08998 * 109.47238 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47355 * 300.00712 * 10 9 7 36 36 H 1.08997 * 109.47229 * 59.99026 * 11 9 7 37 37 H 1.08998 * 109.47643 * 179.97438 * 11 9 7 38 38 H 1.08998 * 109.46893 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.47564 * 59.99891 * 12 11 9 40 40 H 1.08998 * 109.47297 * 299.99919 * 13 12 11 41 41 H 1.09006 * 109.46900 * 180.02562 * 13 12 11 42 42 H 1.08998 * 109.46630 * 180.02562 * 14 13 12 43 43 H 1.08998 * 109.47147 * 59.99941 * 14 13 12 44 44 H 1.08998 * 109.47686 * 300.00120 * 15 14 13 45 45 H 1.09005 * 109.47073 * 179.97438 * 15 14 13 46 46 H 0.96996 * 120.00047 * 265.00188 * 16 2 1 47 47 H 0.97003 * 119.99981 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3343 0.2340 1.7613 7 6 4.0757 -1.8987 0.6117 8 8 3.3859 -2.7538 0.0980 9 6 5.5764 -2.0353 0.6027 10 6 6.1146 -1.8430 2.0220 11 6 6.1796 -0.9739 -0.3195 12 6 5.6414 -1.1661 -1.7388 13 6 6.0239 -2.5584 -2.2450 14 6 5.4207 -3.6198 -1.3227 15 6 5.9589 -3.4276 0.0965 16 7 2.0183 -0.6907 -1.1961 17 6 2.1492 -0.0076 -2.3757 18 1 1.8927 1.0404 -2.4241 19 6 2.6124 -0.6619 -3.5089 20 7 2.9254 -1.9389 -3.4498 21 14 2.7915 0.2702 -5.1179 22 1 4.1538 0.8552 -5.2020 23 1 2.5817 -0.6611 -6.2554 24 1 1.7815 1.3573 -5.1753 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6053 -1.7198 1.2952 29 1 1.7516 -0.1583 2.1370 30 1 4.4570 0.0638 2.8310 31 1 5.3113 0.2274 1.2781 32 1 3.8554 1.1998 1.5997 33 1 5.6849 -2.5991 2.6790 34 1 7.2001 -1.9413 2.0155 35 1 5.8420 -0.8512 2.3827 36 1 5.9071 0.0180 0.0411 37 1 7.2651 -1.0723 -0.3257 38 1 6.0708 -0.4097 -2.3957 39 1 4.5560 -1.0674 -1.7323 40 1 7.1094 -2.6571 -2.2515 41 1 5.6409 -2.6952 -3.2563 42 1 5.6936 -4.6117 -1.6831 43 1 4.3353 -3.5211 -1.3163 44 1 7.0444 -3.5263 0.0900 45 1 5.5289 -4.1835 0.7537 46 1 2.2490 -1.6318 -1.1525 47 1 3.2487 -2.3962 -4.2418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755607832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:51 Heat of formation + Delta-G solvation = -15.680843 kcal Electronic energy + Delta-G solvation = -25757.922882 eV Core-core repulsion = 22555.408794 eV Total energy + Delta-G solvation = -3202.514087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51707 -37.08611 -35.60549 -34.66557 -32.21730 -31.66374 -30.01014 -28.50274 -27.13391 -25.97021 -25.56827 -23.52527 -21.94289 -21.68853 -19.99342 -19.50595 -18.29023 -17.06380 -15.86193 -15.42926 -15.10957 -14.75424 -14.36719 -13.87780 -13.75368 -13.37976 -13.31426 -13.11223 -12.80873 -12.54684 -12.13646 -12.01273 -11.95085 -11.82130 -11.46793 -11.34115 -11.27332 -11.14190 -11.04818 -10.78113 -10.73407 -10.59030 -10.29181 -10.04826 -9.96597 -9.75368 -9.46094 -9.37740 -9.24738 -8.68171 -8.47858 -7.93503 -6.72424 -5.54918 -2.83343 3.36563 3.49034 3.55601 3.56736 3.63402 4.71151 4.85231 5.05826 5.22074 5.30007 5.42406 5.55751 5.63229 5.69805 5.73677 5.76044 5.80985 5.88989 5.98232 5.99426 6.07677 6.09642 6.14647 6.18879 6.23984 6.30718 6.32339 6.35512 6.39586 6.47132 6.58440 6.64885 6.76082 6.88854 6.98640 7.05405 7.08119 7.22239 7.24400 7.59620 7.76099 7.86668 8.06078 8.61684 8.99035 9.74453 10.36870 10.78726 11.63144 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.009613 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.414895 B = 2912.016615 C = 4063.529045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 H 0.041 0.959 4 C 0.110 3.890 5 N -0.607 5.607 6 C 0.063 3.937 7 C 0.536 3.464 8 O -0.510 6.510 9 C -0.075 4.075 10 C -0.164 4.164 11 C -0.110 4.110 12 C -0.137 4.137 13 C -0.096 4.096 14 C -0.135 4.135 15 C -0.087 4.087 16 N -0.719 5.719 17 C -0.239 4.239 18 H 0.060 0.940 19 C -0.004 4.004 20 N -0.906 5.906 21 Si 0.888 3.112 22 H -0.293 1.293 23 H -0.294 1.294 24 H -0.287 1.287 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.129 0.871 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.121 0.879 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.400 0.600 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 2.053 12.275 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.059 0.941 4 C -0.014 4.014 5 N -0.340 5.340 6 C -0.080 4.080 7 C 0.324 3.676 8 O -0.384 6.384 9 C -0.078 4.078 10 C -0.221 4.221 11 C -0.147 4.147 12 C -0.174 4.174 13 C -0.133 4.133 14 C -0.172 4.172 15 C -0.125 4.125 16 N -0.366 5.366 17 C -0.371 4.371 18 H 0.078 0.922 19 C -0.201 4.201 20 N -0.554 5.554 21 Si 0.720 3.280 22 H -0.221 1.221 23 H -0.221 1.221 24 H -0.213 1.213 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.147 0.853 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.139 0.861 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.240 0.760 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.032 1.657 11.859 13.408 hybrid contribution 0.268 0.475 -1.037 1.171 sum 6.300 2.132 10.822 12.703 Atomic orbital electron populations 1.22412 0.99387 1.00845 0.99757 1.20616 0.91804 0.95498 0.87772 0.94126 1.21802 0.79714 1.01831 0.98033 1.47544 1.06262 1.21025 1.59212 1.22343 0.97084 0.91149 0.97462 1.20216 0.89722 0.80947 0.76675 1.90549 1.64315 1.41310 1.42256 1.20736 0.92431 0.98497 0.96122 1.22390 1.01146 1.03285 0.95272 1.21817 0.99246 0.96875 0.96734 1.21807 1.06835 0.95998 0.92767 1.21247 0.96897 0.95321 0.99880 1.21897 1.06098 0.96776 0.92430 1.21340 0.99166 0.93678 0.98286 1.42756 1.77552 1.11841 1.04434 1.19115 1.36718 0.93478 0.87755 0.92153 1.24597 1.02689 0.95829 0.97017 1.69704 1.49993 1.07769 1.27922 0.86487 0.77536 0.78787 0.85154 1.22090 1.22056 1.21271 0.94838 0.92759 0.93463 0.90521 0.91509 0.93317 0.89024 0.91957 0.92708 0.92212 0.90448 0.91441 0.92425 0.93888 0.85301 0.95309 0.91901 0.94203 0.86066 0.92827 0.92599 0.76023 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 37.16 0.35 -2.65 16 2 C 0.15 3.09 3.20 -67.93 -0.22 2.87 16 3 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 4 C 0.11 1.87 5.17 -4.03 -0.02 1.84 16 5 N -0.61 -10.10 2.77 -181.57 -0.50 -10.60 16 6 C 0.06 0.79 8.45 59.84 0.51 1.30 16 7 C 0.54 10.09 4.43 -10.99 -0.05 10.04 16 8 O -0.51 -11.59 10.55 5.56 0.06 -11.53 16 9 C -0.07 -1.19 0.50 -155.66 -0.08 -1.27 16 10 C -0.16 -1.99 8.05 37.16 0.30 -1.69 16 11 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.14 -2.81 5.70 -26.73 -0.15 -2.97 16 13 C -0.10 -1.92 5.92 -26.73 -0.16 -2.08 16 14 C -0.14 -2.67 5.63 -26.73 -0.15 -2.82 16 15 C -0.09 -1.44 4.44 -26.73 -0.12 -1.56 16 16 N -0.72 -17.82 4.08 -53.43 -0.22 -18.04 16 17 C -0.24 -6.48 9.36 -15.06 -0.14 -6.62 16 18 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 19 C 0.00 -0.12 4.84 -17.43 -0.08 -0.20 16 20 N -0.91 -25.90 12.32 55.49 0.68 -25.21 16 21 Si 0.89 22.31 29.55 -169.99 -5.02 17.29 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.43 7.46 -51.93 -0.39 1.04 16 29 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.05 0.49 7.24 -51.92 -0.38 0.12 16 31 H 0.09 1.14 2.85 -51.93 -0.15 0.99 16 32 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.82 3.78 -51.93 -0.20 0.63 16 36 H 0.07 1.03 5.09 -51.93 -0.26 0.77 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.13 3.11 4.62 -51.93 -0.24 2.87 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.12 2.90 5.20 -51.93 -0.27 2.63 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.40 10.73 4.91 -40.82 -0.20 10.53 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -30.00 339.54 -7.98 -37.98 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -7.96 Total: 12.70 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.13 Total: -7.71 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.04 Total: -53.85 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.06 Total: -11.53 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.00 -7.98 -37.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755607832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.302 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds