Wall clock time and date at job start Tue Mar 31 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99575 * 2 1 4 4 C 1.50703 * 109.47192 * 270.00117 * 3 2 1 5 5 H 1.07995 * 119.99778 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99644 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99449 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00329 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47180 * 90.00501 * 8 6 4 10 10 H 1.48504 * 109.47102 * 210.00303 * 8 6 4 11 11 H 1.48503 * 109.47277 * 330.00095 * 8 6 4 12 12 C 1.34775 * 120.00452 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99718 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99902 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.46972 * 179.97438 * 14 12 2 16 16 N 1.46901 * 109.47034 * 179.97438 * 15 14 12 17 17 C 1.46898 * 111.00099 * 293.95512 * 16 15 14 18 18 C 1.46896 * 110.99907 * 169.99813 * 16 15 14 19 19 C 1.52997 * 109.46848 * 70.00218 * 18 16 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47053 * 189.99932 * 18 16 15 24 24 H 1.09004 * 109.47368 * 269.99848 * 1 2 3 25 25 H 1.08995 * 109.47628 * 30.00326 * 1 2 3 26 26 H 1.09007 * 109.46601 * 149.99944 * 1 2 3 27 27 H 1.09005 * 109.47087 * 29.99665 * 3 2 1 28 28 H 1.08998 * 109.47337 * 149.99681 * 3 2 1 29 29 H 0.97005 * 119.99881 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46963 * 60.00268 * 14 12 2 31 31 H 1.08998 * 109.47221 * 300.00029 * 14 12 2 32 32 H 1.09003 * 109.47036 * 60.00339 * 15 14 12 33 33 H 1.08998 * 109.47192 * 300.00072 * 15 14 12 34 34 H 1.08994 * 109.47338 * 296.04783 * 17 16 15 35 35 H 1.08998 * 109.46955 * 56.04897 * 17 16 15 36 36 H 1.09002 * 109.47088 * 176.04150 * 17 16 15 37 37 H 1.09002 * 109.47220 * 310.00287 * 18 16 15 38 38 H 1.08996 * 109.47853 * 300.00000 * 19 18 16 39 39 H 1.09002 * 109.47153 * 60.00028 * 19 18 16 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00238 * 23 18 16 47 47 H 1.09004 * 109.46724 * 60.00724 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.3463 3.2570 -2.9126 8 14 3.7336 3.9289 -0.2529 9 1 5.1067 3.5072 0.1237 10 1 3.7493 5.3556 -0.6647 11 1 2.8270 3.7597 0.9112 12 6 2.1390 -1.1671 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3856 -2.4723 0.0005 15 6 2.3799 -3.6351 0.0005 16 7 1.6455 -4.9074 0.0011 17 6 0.9005 -5.0846 1.2547 18 6 2.5519 -6.0385 -0.2370 19 6 3.4519 -6.2367 0.9843 20 6 4.3956 -7.4152 0.7366 21 6 3.5749 -8.6841 0.4965 22 6 2.6749 -8.4859 -0.7248 23 6 1.7316 -7.3075 -0.4773 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5139 27 1 1.6082 2.0284 0.5138 28 1 3.1498 1.1386 0.5139 29 1 3.8231 4.0830 -3.0899 30 1 0.7593 -2.5302 -0.8897 31 1 0.7586 -2.5299 0.8902 32 1 3.0065 -3.5774 0.8906 33 1 3.0066 -3.5773 -0.8894 34 1 1.6008 -5.1524 2.0871 35 1 0.2370 -4.2332 1.4065 36 1 0.3107 -5.9996 1.2006 37 1 3.1677 -5.8327 -1.1126 38 1 4.0363 -5.3327 1.1556 39 1 2.8362 -6.4426 1.8598 40 1 5.0365 -7.5567 1.6068 41 1 5.0114 -7.2097 -0.1390 42 1 2.9591 -8.8896 1.3721 43 1 4.2473 -9.5236 0.3196 44 1 2.0907 -9.3899 -0.8961 45 1 3.2908 -8.2804 -1.6004 46 1 1.1159 -7.5134 0.3982 47 1 1.0905 -7.1663 -1.3475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:14 Heat of formation + Delta-G solvation = -46.683595 kcal Electronic energy + Delta-G solvation = -22876.037603 eV Core-core repulsion = 19672.179136 eV Total energy + Delta-G solvation = -3203.858468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.80310 -38.90165 -36.08530 -34.86609 -32.57844 -31.46669 -30.94458 -29.09241 -28.25141 -26.48745 -25.71983 -23.51267 -22.73863 -21.76520 -20.64964 -19.48505 -18.36577 -16.94767 -16.70284 -16.02785 -15.49154 -15.27567 -14.98303 -14.62886 -14.43897 -14.27301 -14.03766 -13.74580 -13.19760 -12.91003 -12.56246 -12.48751 -12.31964 -12.26463 -12.18974 -11.98305 -11.76299 -11.65198 -11.39783 -11.24992 -11.12123 -10.91052 -10.81347 -10.68357 -10.50236 -10.44258 -10.22843 -10.12787 -9.52456 -8.96908 -8.57376 -8.26945 -7.67240 -6.07087 -4.05631 3.30125 3.36045 3.37788 3.39057 3.64695 4.11420 4.41001 4.48384 4.56746 4.74486 4.91795 5.00879 5.07043 5.19075 5.21032 5.23896 5.28504 5.31447 5.36340 5.40411 5.44453 5.52026 5.53669 5.61712 5.72225 5.82704 5.85185 5.87918 5.90979 5.91977 5.93764 6.02667 6.09593 6.15970 6.21047 6.23407 6.24261 6.71929 6.95725 7.05697 7.06701 7.36726 7.63044 8.28275 8.49207 8.95184 9.02206 9.53330 11.06417 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029768 B = 0.003166 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.366634 B = 8842.866205 C = 9152.511526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.545 6.545 14 C -0.134 4.134 15 C 0.071 3.929 16 N -0.538 5.538 17 C 0.014 3.986 18 C 0.086 3.914 19 C -0.155 4.155 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 -21.830 8.891 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.293 3.707 13 O -0.423 6.423 14 C -0.174 4.174 15 C -0.057 4.057 16 N -0.260 5.260 17 C -0.134 4.134 18 C -0.023 4.023 19 C -0.194 4.194 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.147 4.147 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.486 -21.623 8.392 23.835 hybrid contribution 0.829 0.758 1.238 1.671 sum -4.657 -20.865 9.629 23.447 Atomic orbital electron populations 1.21662 0.80932 1.03093 1.00345 1.47843 1.06298 1.07156 1.71821 1.19654 0.92438 0.80165 0.98331 1.21343 1.36879 1.07106 0.91307 0.90765 1.24869 0.95266 0.97375 0.95582 1.69903 1.41545 1.23574 1.18651 0.86837 0.80106 0.79721 0.82934 1.19927 1.21073 1.19091 1.20364 0.88057 0.85192 0.77052 1.90660 1.14045 1.87379 1.50198 1.21638 0.99318 0.92427 1.04042 1.21819 0.94575 0.86891 1.02379 1.62199 1.27403 1.01955 1.34438 1.22515 0.98097 1.02290 0.90491 1.21732 0.92531 0.90458 0.97536 1.22245 0.98698 0.98858 0.99561 1.21467 0.97687 0.94592 1.01613 1.21547 0.98340 0.97482 0.98328 1.21520 0.97944 0.98054 0.98178 1.21550 0.97717 0.93259 1.02134 0.93786 0.90642 0.91942 0.95313 0.94633 0.92581 0.88548 0.89764 0.93933 0.89947 0.95217 0.91332 0.91446 0.89965 0.91662 0.91640 0.92228 0.91867 0.92231 0.92215 0.91980 0.91867 0.92038 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.55 2.86 -182.95 -0.52 -13.07 16 3 C 0.21 5.36 4.23 -5.19 -0.02 5.34 16 4 C -0.53 -15.43 9.94 -34.44 -0.34 -15.78 16 5 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 8 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 12 C 0.51 10.42 7.67 -10.99 -0.08 10.33 16 13 O -0.54 -13.52 15.56 5.56 0.09 -13.43 16 14 C -0.13 -1.98 4.18 -27.88 -0.12 -2.10 16 15 C 0.07 1.02 3.82 -3.82 -0.01 1.01 16 16 N -0.54 -6.28 4.71 -234.89 -1.11 -7.39 16 17 C 0.01 0.14 8.58 60.06 0.52 0.66 16 18 C 0.09 0.90 2.19 -67.72 -0.15 0.75 16 19 C -0.15 -1.54 4.45 -26.73 -0.12 -1.66 16 20 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 21 C -0.12 -0.90 5.92 -26.73 -0.16 -1.05 16 22 C -0.12 -0.91 5.92 -26.75 -0.16 -1.07 16 23 C -0.11 -0.95 5.12 -26.75 -0.14 -1.09 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 26 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 27 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 28 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.10 1.36 7.40 -51.93 -0.38 0.97 16 31 H 0.08 1.05 6.44 -51.93 -0.33 0.71 16 32 H 0.04 0.65 7.01 -51.93 -0.36 0.28 16 33 H 0.08 1.33 7.89 -51.93 -0.41 0.92 16 34 H 0.03 0.29 6.21 -51.93 -0.32 -0.03 16 35 H 0.07 0.65 6.30 -51.93 -0.33 0.32 16 36 H 0.07 0.58 6.47 -51.93 -0.34 0.25 16 37 H 0.08 0.95 7.93 -51.93 -0.41 0.53 16 38 H 0.06 0.75 6.91 -51.93 -0.36 0.39 16 39 H 0.06 0.63 6.33 -51.93 -0.33 0.30 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -33.54 354.43 -8.89 -42.43 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -8.37 Total: -1.90 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.43 Total: -1.89 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.86 Total: -47.73 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.54 -8.89 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.253 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds