Wall clock time and date at job start Tue Mar 31 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99575 * 2 1 4 4 C 1.50703 * 109.47192 * 270.00117 * 3 2 1 5 5 H 1.07995 * 119.99778 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99644 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99449 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00329 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47180 * 90.00501 * 8 6 4 10 10 H 1.48504 * 109.47102 * 210.00303 * 8 6 4 11 11 H 1.48503 * 109.47277 * 330.00095 * 8 6 4 12 12 C 1.34775 * 120.00452 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99718 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99902 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.46972 * 179.97438 * 14 12 2 16 16 N 1.46901 * 109.47034 * 179.97438 * 15 14 12 17 17 C 1.46898 * 111.00099 * 293.95512 * 16 15 14 18 18 C 1.46896 * 110.99907 * 169.99813 * 16 15 14 19 19 C 1.52997 * 109.46848 * 70.00218 * 18 16 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47053 * 189.99932 * 18 16 15 24 24 H 1.09004 * 109.47368 * 269.99848 * 1 2 3 25 25 H 1.08995 * 109.47628 * 30.00326 * 1 2 3 26 26 H 1.09007 * 109.46601 * 149.99944 * 1 2 3 27 27 H 1.09005 * 109.47087 * 29.99665 * 3 2 1 28 28 H 1.08998 * 109.47337 * 149.99681 * 3 2 1 29 29 H 0.97005 * 119.99881 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.46963 * 60.00268 * 14 12 2 31 31 H 1.08998 * 109.47221 * 300.00029 * 14 12 2 32 32 H 1.09003 * 109.47036 * 60.00339 * 15 14 12 33 33 H 1.08998 * 109.47192 * 300.00072 * 15 14 12 34 34 H 1.08994 * 109.47338 * 296.04783 * 17 16 15 35 35 H 1.08998 * 109.46955 * 56.04897 * 17 16 15 36 36 H 1.09002 * 109.47088 * 176.04150 * 17 16 15 37 37 H 1.09002 * 109.47220 * 310.00287 * 18 16 15 38 38 H 1.08996 * 109.47853 * 300.00000 * 19 18 16 39 39 H 1.09002 * 109.47153 * 60.00028 * 19 18 16 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00238 * 23 18 16 47 47 H 1.09004 * 109.46724 * 60.00724 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.3463 3.2570 -2.9126 8 14 3.7336 3.9289 -0.2529 9 1 5.1067 3.5072 0.1237 10 1 3.7493 5.3556 -0.6647 11 1 2.8270 3.7597 0.9112 12 6 2.1390 -1.1671 0.0005 13 8 3.3518 -1.1670 0.0010 14 6 1.3856 -2.4723 0.0005 15 6 2.3799 -3.6351 0.0005 16 7 1.6455 -4.9074 0.0011 17 6 0.9005 -5.0846 1.2547 18 6 2.5519 -6.0385 -0.2370 19 6 3.4519 -6.2367 0.9843 20 6 4.3956 -7.4152 0.7366 21 6 3.5749 -8.6841 0.4965 22 6 2.6749 -8.4859 -0.7248 23 6 1.7316 -7.3075 -0.4773 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5139 27 1 1.6082 2.0284 0.5138 28 1 3.1498 1.1386 0.5139 29 1 3.8231 4.0830 -3.0899 30 1 0.7593 -2.5302 -0.8897 31 1 0.7586 -2.5299 0.8902 32 1 3.0065 -3.5774 0.8906 33 1 3.0066 -3.5773 -0.8894 34 1 1.6008 -5.1524 2.0871 35 1 0.2370 -4.2332 1.4065 36 1 0.3107 -5.9996 1.2006 37 1 3.1677 -5.8327 -1.1126 38 1 4.0363 -5.3327 1.1556 39 1 2.8362 -6.4426 1.8598 40 1 5.0365 -7.5567 1.6068 41 1 5.0114 -7.2097 -0.1390 42 1 2.9591 -8.8896 1.3721 43 1 4.2473 -9.5236 0.3196 44 1 2.0907 -9.3899 -0.8961 45 1 3.2908 -8.2804 -1.6004 46 1 1.1159 -7.5134 0.3982 47 1 1.0905 -7.1663 -1.3475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:14 Heat of formation + Delta-G solvation = -69.308061 kcal Electronic energy + Delta-G solvation = -22877.018674 eV Core-core repulsion = 19672.179136 eV Total energy + Delta-G solvation = -3204.839538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95233 -40.20381 -37.03618 -36.54815 -34.72407 -32.69593 -31.67258 -30.52207 -29.52118 -27.58626 -27.11601 -24.92190 -23.72700 -23.01069 -21.59672 -20.26622 -19.92420 -19.16205 -18.06479 -17.25087 -16.91762 -16.68139 -16.08898 -15.95467 -15.48344 -15.20837 -15.13913 -14.80779 -14.69197 -14.22643 -14.03715 -13.66108 -13.59229 -13.45665 -13.29727 -13.20079 -13.03690 -12.86469 -12.64908 -12.52266 -12.36734 -12.05085 -12.00101 -11.98142 -11.79818 -11.75726 -11.39529 -11.17402 -11.00423 -10.84644 -10.66009 -9.39718 -9.20458 -8.35426 -6.40742 1.31439 1.35809 1.44408 1.79177 2.27868 2.30125 2.97351 2.99613 3.73410 3.78551 3.85395 3.96756 4.06113 4.13954 4.24927 4.33617 4.39265 4.45590 4.50274 4.54027 4.61716 4.66019 4.67086 4.71856 4.73463 4.80013 4.88111 4.93637 4.95536 5.00344 5.03337 5.09442 5.15817 5.19181 5.23614 5.24746 5.35574 5.44735 5.46175 5.53975 5.61659 6.07414 6.17343 6.22777 6.60646 6.69716 7.20002 7.41565 8.81770 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029768 B = 0.003166 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.366634 B = 8842.866205 C = 9152.511526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.222 3.778 4 C -0.537 4.537 5 H 0.027 0.973 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.237 1.237 12 C 0.495 3.505 13 O -0.599 6.599 14 C -0.116 4.116 15 C 0.080 3.920 16 N -0.538 5.538 17 C 0.012 3.988 18 C 0.083 3.917 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.101 4.101 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.017 0.983 29 H 0.269 0.731 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.028 0.972 33 H 0.053 0.947 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 -23.074 11.232 26.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C 0.100 3.900 4 C -0.576 4.576 5 H 0.045 0.955 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.160 1.160 12 C 0.284 3.716 13 O -0.481 6.481 14 C -0.155 4.155 15 C -0.048 4.048 16 N -0.260 5.260 17 C -0.136 4.136 18 C -0.025 4.025 19 C -0.188 4.188 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.139 4.139 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.442 -22.894 10.741 26.361 hybrid contribution 1.399 1.080 0.419 1.816 sum -6.043 -21.814 11.160 25.237 Atomic orbital electron populations 1.21987 0.77444 1.04054 1.03027 1.47990 1.08570 1.05937 1.71460 1.19337 0.92745 0.82708 0.95250 1.21579 1.36833 1.06748 0.92442 0.95472 1.25893 0.95273 0.98992 0.98727 1.70058 1.42723 1.24521 1.21340 0.85680 0.79515 0.77725 0.79801 1.20273 1.19865 1.15992 1.21401 0.87806 0.86802 0.75550 1.90628 1.16685 1.88269 1.52540 1.21568 0.98895 0.88842 1.06229 1.21593 0.94329 0.88513 1.00380 1.62223 1.27099 1.00930 1.35762 1.22622 0.98014 1.03628 0.89330 1.21782 0.92746 0.90988 0.97025 1.22177 0.98675 0.98410 0.99568 1.21476 0.97635 0.94799 1.01487 1.21526 0.98360 0.96893 0.98495 1.21523 0.97856 0.98139 0.98041 1.21500 0.97614 0.92446 1.02368 0.90048 0.91680 0.89144 0.93076 0.96476 0.92233 0.87186 0.86173 0.95337 0.92878 0.95259 0.90432 0.89639 0.91886 0.94049 0.90791 0.91727 0.92723 0.91483 0.91172 0.90434 0.92491 0.91016 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 10.24 127.77 1.31 3.48 16 2 N -0.61 -25.03 2.86 -851.11 -2.43 -27.46 16 3 C 0.22 11.05 4.23 85.63 0.36 11.41 16 4 C -0.54 -32.36 9.94 25.60 0.25 -32.11 16 5 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 6 C 0.01 0.54 5.47 84.65 0.46 1.00 16 7 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 8 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 12 C 0.50 20.39 7.67 87.66 0.67 21.07 16 13 O -0.60 -30.89 15.56 -3.03 -0.05 -30.94 16 14 C -0.12 -3.24 4.18 29.85 0.12 -3.12 16 15 C 0.08 2.32 3.82 86.30 0.33 2.65 16 16 N -0.54 -11.93 4.71 -897.06 -4.23 -16.16 16 17 C 0.01 0.20 8.58 127.69 1.10 1.29 16 18 C 0.08 1.70 2.19 44.92 0.10 1.80 16 19 C -0.15 -2.92 4.45 30.59 0.14 -2.78 16 20 C -0.12 -1.92 5.92 30.60 0.18 -1.73 16 21 C -0.12 -1.50 5.92 30.60 0.18 -1.32 16 22 C -0.12 -1.57 5.92 30.58 0.18 -1.39 16 23 C -0.10 -1.59 5.12 30.58 0.16 -1.43 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 26 H 0.09 2.04 6.44 -2.38 -0.02 2.03 16 27 H 0.05 2.31 7.13 -2.38 -0.02 2.30 16 28 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 29 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 30 H 0.11 2.85 7.40 -2.39 -0.02 2.83 16 31 H 0.12 2.54 6.44 -2.39 -0.02 2.53 16 32 H 0.03 0.89 7.01 -2.39 -0.02 0.88 16 33 H 0.05 1.82 7.89 -2.39 -0.02 1.80 16 34 H 0.03 0.51 6.21 -2.39 -0.01 0.49 16 35 H 0.08 1.18 6.30 -2.39 -0.02 1.16 16 36 H 0.09 1.17 6.47 -2.39 -0.02 1.16 16 37 H 0.06 1.52 7.93 -2.39 -0.02 1.50 16 38 H 0.04 0.99 6.91 -2.39 -0.02 0.98 16 39 H 0.07 1.31 6.33 -2.39 -0.02 1.30 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.07 0.99 6.55 -2.39 -0.02 0.98 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -77.04 354.43 1.89 -75.15 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.87 Total: 14.14 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.55 Total: -1.18 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -6.36 Total: -104.19 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.05 Total: -30.94 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -77.04 1.89 -75.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.842 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds