Wall clock time and date at job start Tue Mar 31 2020 05:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50695 * 109.47390 * 89.99689 * 3 2 1 5 5 H 1.08001 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99997 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99974 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99547 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47248 * 60.00594 * 8 6 4 10 10 H 1.48505 * 109.46948 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47363 * 299.99678 * 8 6 4 12 12 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00062 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00216 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47172 * 179.97438 * 14 12 2 16 16 N 1.46904 * 109.46930 * 180.02562 * 15 14 12 17 17 C 1.46769 * 110.99988 * 45.79394 * 16 15 14 18 18 C 1.52858 * 110.07448 * 168.47689 * 17 16 15 19 19 C 1.53226 * 109.38686 * 77.03688 * 18 17 16 20 20 C 1.53093 * 108.81626 * 285.43857 * 19 18 17 21 21 C 1.52884 * 109.34603 * 316.35827 * 20 19 18 22 22 C 1.52836 * 109.60315 * 112.57668 * 21 20 19 23 23 C 1.46979 * 110.99910 * 170.00231 * 16 15 14 24 24 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 25 25 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 27 27 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 28 28 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 29 29 H 0.96998 * 119.99696 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47357 * 300.00116 * 14 12 2 31 31 H 1.08998 * 109.46869 * 60.00030 * 14 12 2 32 32 H 1.09000 * 109.47535 * 299.99991 * 15 14 12 33 33 H 1.08998 * 109.47172 * 60.00248 * 15 14 12 34 34 H 1.09002 * 109.37196 * 288.65776 * 17 16 15 35 35 H 1.08999 * 109.37433 * 48.29171 * 17 16 15 36 36 H 1.09008 * 109.48361 * 317.06086 * 18 17 16 37 37 H 1.09005 * 109.50088 * 197.02095 * 18 17 16 38 38 H 1.09002 * 109.58039 * 165.64305 * 19 18 17 39 39 H 1.08991 * 109.69073 * 45.30629 * 19 18 17 40 40 H 1.08998 * 109.49400 * 196.39360 * 20 19 18 41 41 H 1.09000 * 109.51450 * 76.33615 * 20 19 18 42 42 H 1.09001 * 109.44349 * 352.53821 * 21 20 19 43 43 H 1.08997 * 109.42807 * 232.60456 * 21 20 19 44 44 H 1.08999 * 109.48340 * 164.00257 * 22 21 20 45 45 H 1.08996 * 109.50487 * 43.94601 * 22 21 20 46 46 H 1.09005 * 109.49614 * 242.56760 * 23 16 15 47 47 H 1.08999 * 109.49883 * 2.62198 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4207 5 1 2.0981 1.0959 2.2417 6 6 3.1268 2.8776 1.6726 7 7 3.5541 3.6177 0.6730 8 14 3.4386 3.4165 3.4338 9 1 4.2411 2.3814 4.1335 10 1 4.1821 4.7021 3.4338 11 1 2.1413 3.5945 4.1341 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3798 -3.6352 0.0005 16 7 1.6453 -4.9074 -0.0001 17 6 0.5553 -4.8849 -0.9827 18 6 -0.0087 -6.2929 -1.1730 19 6 -0.9112 -6.6441 0.0144 20 6 -0.0320 -6.9436 1.2313 21 6 1.1449 -7.8201 0.8024 22 6 2.4462 -7.0281 0.9270 23 6 2.5523 -6.0391 -0.2383 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 -0.5139 28 1 1.6084 2.0284 -0.5139 29 1 4.0309 4.4436 0.8503 30 1 0.7585 -2.5299 0.8903 31 1 0.7592 -2.5302 -0.8897 32 1 3.0065 -3.5775 -0.8894 33 1 3.0064 -3.5774 0.8905 34 1 -0.2359 -4.2233 -0.6299 35 1 0.9348 -4.5157 -1.9354 36 1 0.8117 -7.0084 -1.2303 37 1 -0.5892 -6.3308 -2.0948 38 1 -1.5097 -7.5221 -0.2288 39 1 -1.5690 -5.8039 0.2368 40 1 -0.6201 -7.4675 1.9848 41 1 0.3434 -6.0090 1.6482 42 1 1.0072 -8.1313 -0.2331 43 1 1.1933 -8.7008 1.4427 44 1 3.2930 -7.7138 0.9005 45 1 2.4504 -6.4812 1.8698 46 1 2.2743 -6.5390 -1.1663 47 1 3.5767 -5.6746 -0.3144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034674367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:49 Heat of formation + Delta-G solvation = -32.549454 kcal Electronic energy + Delta-G solvation = -23193.378678 eV Core-core repulsion = 19990.133113 eV Total energy + Delta-G solvation = -3203.245565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.78365 -38.75186 -35.47327 -34.72006 -33.04566 -32.61819 -31.05312 -28.22744 -27.22568 -26.27415 -25.68277 -23.80633 -22.50995 -21.94184 -20.74684 -19.21382 -18.23936 -16.65132 -16.50231 -16.20236 -15.74232 -15.30088 -14.98590 -14.58694 -14.36424 -14.16818 -13.77216 -13.65956 -13.46248 -13.01288 -12.46857 -12.20759 -12.11782 -12.02943 -11.80635 -11.78199 -11.49701 -11.34443 -11.15375 -11.00789 -10.98670 -10.88221 -10.83489 -10.60601 -10.51354 -10.30611 -10.14993 -10.09893 -9.62431 -8.85941 -8.41754 -8.18232 -7.61575 -6.02650 -4.07426 3.33265 3.37481 3.39522 3.48647 3.73264 4.17266 4.47010 4.60620 4.75147 4.80334 4.96730 4.98951 5.12492 5.13795 5.21659 5.28834 5.33803 5.39021 5.44637 5.54505 5.59852 5.63700 5.67711 5.77392 5.77740 5.80877 5.85609 5.94410 5.99446 6.05447 6.09286 6.17205 6.20026 6.24060 6.28279 6.29414 6.52621 7.06158 7.11338 7.14404 7.46093 7.56697 7.93863 8.25546 8.45060 8.92104 9.12843 9.57653 11.05452 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.003376 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.418946 B = 8291.704651 C = 8531.422918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.140 4.140 15 C 0.073 3.927 16 N -0.533 5.533 17 C 0.051 3.949 18 C -0.142 4.142 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.112 4.112 23 C 0.044 3.956 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.030 0.970 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -21.252 -3.158 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.423 6.423 14 C -0.181 4.181 15 C -0.054 4.054 16 N -0.258 5.258 17 C -0.076 4.076 18 C -0.179 4.179 19 C -0.147 4.147 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.084 4.084 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.930 -21.100 -2.751 23.076 hybrid contribution 0.371 0.630 0.164 0.749 sum -8.559 -20.470 -2.587 22.338 Atomic orbital electron populations 1.21629 0.81496 1.02600 1.00279 1.48160 1.06154 1.07900 1.71370 1.19266 0.92519 0.78169 0.97454 1.21410 1.36542 1.06269 0.92321 0.92510 1.24943 0.95347 0.96389 0.97458 1.69922 1.38387 1.14372 1.30810 0.86552 0.78368 0.77807 0.84657 1.20155 1.21176 1.20232 1.20313 0.88081 0.85175 0.77415 1.90664 1.14006 1.87360 1.50287 1.21773 0.99429 0.93079 1.03796 1.21959 0.94709 0.86513 1.02251 1.62171 1.11585 1.02758 1.49333 1.22231 0.94714 0.97198 0.93504 1.22209 1.00319 0.97284 0.98127 1.21579 0.97343 1.00535 0.95273 1.21667 0.95959 1.01098 0.97068 1.21712 0.95263 0.97809 1.01134 1.21694 0.96811 0.97023 0.99466 1.22393 0.95695 0.92379 0.97893 0.93898 0.92374 0.90837 0.93926 0.95104 0.92674 0.88783 0.89788 0.94112 0.89801 0.90462 0.95151 0.89674 0.92116 0.93003 0.92078 0.93407 0.89476 0.91699 0.93024 0.92456 0.90987 0.92166 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.96 16 2 N -0.60 -13.01 2.86 -182.95 -0.52 -13.53 16 3 C 0.25 6.54 5.16 -5.20 -0.03 6.52 16 4 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.50 10.56 7.67 -10.99 -0.08 10.48 16 13 O -0.55 -13.87 15.56 5.55 0.09 -13.78 16 14 C -0.14 -2.08 3.55 -27.88 -0.10 -2.18 16 15 C 0.07 1.05 4.22 -3.82 -0.02 1.03 16 16 N -0.53 -6.07 3.12 -234.62 -0.73 -6.80 16 17 C 0.05 0.51 3.97 -3.97 -0.02 0.50 16 18 C -0.14 -1.19 5.32 -26.69 -0.14 -1.34 16 19 C -0.11 -0.91 5.77 -26.57 -0.15 -1.06 16 20 C -0.12 -1.08 5.50 -26.74 -0.15 -1.23 16 21 C -0.12 -1.02 5.46 -26.87 -0.15 -1.16 16 22 C -0.11 -1.03 5.69 -26.70 -0.15 -1.18 16 23 C 0.04 0.45 5.26 -3.67 -0.02 0.43 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 26 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 30 H 0.09 1.30 7.40 -51.93 -0.38 0.91 16 31 H 0.08 1.07 6.49 -51.93 -0.34 0.74 16 32 H 0.04 0.63 7.97 -51.93 -0.41 0.22 16 33 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 34 H 0.08 0.77 6.65 -51.93 -0.35 0.42 16 35 H 0.03 0.32 7.99 -51.93 -0.41 -0.09 16 36 H 0.09 0.71 2.86 -51.92 -0.15 0.56 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.94 6.33 -51.93 -0.33 0.61 16 42 H 0.06 0.52 5.42 -51.93 -0.28 0.23 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 46 H 0.06 0.56 5.46 -51.93 -0.28 0.27 16 47 H 0.06 0.64 7.50 -51.93 -0.39 0.25 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -32.42 351.10 -9.17 -41.59 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -8.20 Total: -2.53 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.81 Total: -1.10 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.52 Total: -46.57 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.42 -9.17 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.043 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds