Wall clock time and date at job start Tue Mar 31 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50695 * 109.47390 * 89.99689 * 3 2 1 5 5 H 1.08001 * 120.00425 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99997 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99974 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99547 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47248 * 60.00594 * 8 6 4 10 10 H 1.48505 * 109.46948 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47363 * 299.99678 * 8 6 4 12 12 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00062 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00216 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47172 * 179.97438 * 14 12 2 16 16 N 1.46904 * 109.46930 * 180.02562 * 15 14 12 17 17 C 1.46769 * 110.99988 * 45.79394 * 16 15 14 18 18 C 1.52858 * 110.07448 * 168.47689 * 17 16 15 19 19 C 1.53226 * 109.38686 * 77.03688 * 18 17 16 20 20 C 1.53093 * 108.81626 * 285.43857 * 19 18 17 21 21 C 1.52884 * 109.34603 * 316.35827 * 20 19 18 22 22 C 1.52836 * 109.60315 * 112.57668 * 21 20 19 23 23 C 1.46979 * 110.99910 * 170.00231 * 16 15 14 24 24 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 25 25 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 27 27 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 28 28 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 29 29 H 0.96998 * 119.99696 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47357 * 300.00116 * 14 12 2 31 31 H 1.08998 * 109.46869 * 60.00030 * 14 12 2 32 32 H 1.09000 * 109.47535 * 299.99991 * 15 14 12 33 33 H 1.08998 * 109.47172 * 60.00248 * 15 14 12 34 34 H 1.09002 * 109.37196 * 288.65776 * 17 16 15 35 35 H 1.08999 * 109.37433 * 48.29171 * 17 16 15 36 36 H 1.09008 * 109.48361 * 317.06086 * 18 17 16 37 37 H 1.09005 * 109.50088 * 197.02095 * 18 17 16 38 38 H 1.09002 * 109.58039 * 165.64305 * 19 18 17 39 39 H 1.08991 * 109.69073 * 45.30629 * 19 18 17 40 40 H 1.08998 * 109.49400 * 196.39360 * 20 19 18 41 41 H 1.09000 * 109.51450 * 76.33615 * 20 19 18 42 42 H 1.09001 * 109.44349 * 352.53821 * 21 20 19 43 43 H 1.08997 * 109.42807 * 232.60456 * 21 20 19 44 44 H 1.08999 * 109.48340 * 164.00257 * 22 21 20 45 45 H 1.08996 * 109.50487 * 43.94601 * 22 21 20 46 46 H 1.09005 * 109.49614 * 242.56760 * 23 16 15 47 47 H 1.08999 * 109.49883 * 2.62198 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4207 5 1 2.0981 1.0959 2.2417 6 6 3.1268 2.8776 1.6726 7 7 3.5541 3.6177 0.6730 8 14 3.4386 3.4165 3.4338 9 1 4.2411 2.3814 4.1335 10 1 4.1821 4.7021 3.4338 11 1 2.1413 3.5945 4.1341 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3798 -3.6352 0.0005 16 7 1.6453 -4.9074 -0.0001 17 6 0.5553 -4.8849 -0.9827 18 6 -0.0087 -6.2929 -1.1730 19 6 -0.9112 -6.6441 0.0144 20 6 -0.0320 -6.9436 1.2313 21 6 1.1449 -7.8201 0.8024 22 6 2.4462 -7.0281 0.9270 23 6 2.5523 -6.0391 -0.2383 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 -0.5139 28 1 1.6084 2.0284 -0.5139 29 1 4.0309 4.4436 0.8503 30 1 0.7585 -2.5299 0.8903 31 1 0.7592 -2.5302 -0.8897 32 1 3.0065 -3.5775 -0.8894 33 1 3.0064 -3.5774 0.8905 34 1 -0.2359 -4.2233 -0.6299 35 1 0.9348 -4.5157 -1.9354 36 1 0.8117 -7.0084 -1.2303 37 1 -0.5892 -6.3308 -2.0948 38 1 -1.5097 -7.5221 -0.2288 39 1 -1.5690 -5.8039 0.2368 40 1 -0.6201 -7.4675 1.9848 41 1 0.3434 -6.0090 1.6482 42 1 1.0072 -8.1313 -0.2331 43 1 1.1933 -8.7008 1.4427 44 1 3.2930 -7.7138 0.9005 45 1 2.4504 -6.4812 1.8698 46 1 2.2743 -6.5390 -1.1663 47 1 3.5767 -5.6746 -0.3144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034674367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:48 Heat of formation + Delta-G solvation = -52.337621 kcal Electronic energy + Delta-G solvation = -23194.236757 eV Core-core repulsion = 19990.133113 eV Total energy + Delta-G solvation = -3204.103645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94376 -40.08982 -36.71803 -36.21119 -34.74487 -33.76040 -32.27034 -29.88888 -28.40240 -27.27613 -27.00085 -25.39463 -23.79601 -22.87566 -21.69938 -20.10031 -19.69564 -18.71166 -17.98864 -17.24268 -16.95286 -16.83957 -16.35486 -16.02322 -15.60706 -15.11362 -14.97825 -14.53390 -14.34258 -14.24637 -14.01609 -13.78295 -13.54219 -13.45540 -13.24303 -12.93365 -12.80130 -12.57076 -12.53947 -12.39792 -12.20598 -12.18510 -11.94937 -11.75004 -11.72267 -11.60603 -11.27070 -11.05881 -10.82253 -10.65540 -10.60638 -9.42868 -9.10267 -8.23662 -6.38976 1.35766 1.40432 1.47696 1.83044 2.28954 2.42525 3.00987 3.05844 3.81091 3.89659 3.93179 4.04674 4.10952 4.20214 4.26557 4.29370 4.39379 4.41822 4.56241 4.61556 4.71074 4.72263 4.73504 4.85235 4.93031 4.96047 4.97679 5.01444 5.04168 5.11568 5.15915 5.17515 5.21452 5.28665 5.38650 5.43914 5.54889 5.56584 5.59660 5.82201 5.83205 6.04938 6.14246 6.26479 6.68207 6.78466 7.26881 7.47716 8.83318 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.003376 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.418946 B = 8291.704651 C = 8531.422918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.546 4.546 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.259 1.259 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.119 4.119 15 C 0.082 3.918 16 N -0.529 5.529 17 C 0.046 3.954 18 C -0.138 4.138 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.108 4.108 23 C 0.042 3.958 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.065 0.935 27 H -0.005 1.005 28 H 0.023 0.977 29 H 0.268 0.732 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.023 0.977 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 -22.897 -2.587 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.183 1.183 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.159 4.159 15 C -0.046 4.046 16 N -0.254 5.254 17 C -0.081 4.081 18 C -0.174 4.174 19 C -0.145 4.145 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.086 4.086 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.014 0.986 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.208 -22.767 -2.187 25.470 hybrid contribution 1.056 1.110 -0.068 1.534 sum -10.152 -21.657 -2.255 24.024 Atomic orbital electron populations 1.21941 0.77765 1.04053 1.02591 1.48206 1.08494 1.06388 1.71168 1.18737 0.91031 0.80512 0.96004 1.21696 1.37012 1.06631 0.93064 0.92849 1.25891 0.94821 0.96387 1.02134 1.70044 1.38861 1.14818 1.33174 0.85453 0.78916 0.77357 0.79007 1.20356 1.20231 1.18309 1.21404 0.87805 0.86767 0.75800 1.90632 1.16805 1.88280 1.52662 1.21685 0.98979 0.89144 1.06057 1.21736 0.94476 0.88089 1.00303 1.62211 1.11621 1.01443 1.50116 1.22361 0.94180 0.98727 0.92866 1.22179 1.00455 0.95968 0.98836 1.21569 0.97193 1.01035 0.94708 1.21640 0.96316 1.00289 0.97558 1.21689 0.94312 0.97712 1.01833 1.21654 0.97994 0.96864 0.98109 1.22474 0.94846 0.92189 0.99072 0.91078 0.88694 0.91635 0.98640 0.95870 0.92349 0.86724 0.86718 0.95915 0.92256 0.89802 0.95470 0.89577 0.90739 0.91863 0.92124 0.93068 0.91384 0.90812 0.92316 0.91423 0.92570 0.90751 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 10.24 127.77 1.31 3.65 16 2 N -0.61 -26.45 2.86 -851.13 -2.43 -28.88 16 3 C 0.26 14.34 5.16 85.63 0.44 14.78 16 4 C -0.55 -32.19 9.39 25.60 0.24 -31.95 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.39 5.46 84.66 0.46 0.85 16 7 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 8 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 C 0.49 20.92 7.67 87.66 0.67 21.59 16 13 O -0.60 -32.11 15.56 -3.04 -0.05 -32.16 16 14 C -0.12 -3.34 3.55 29.85 0.11 -3.24 16 15 C 0.08 2.36 4.22 86.30 0.36 2.72 16 16 N -0.53 -11.37 3.12 -896.20 -2.80 -14.17 16 17 C 0.05 0.80 3.97 86.28 0.34 1.15 16 18 C -0.14 -1.88 5.32 30.62 0.16 -1.72 16 19 C -0.11 -1.45 5.77 30.70 0.18 -1.28 16 20 C -0.12 -1.89 5.50 30.59 0.17 -1.72 16 21 C -0.12 -1.71 5.46 30.50 0.17 -1.54 16 22 C -0.11 -1.86 5.69 30.61 0.17 -1.68 16 23 C 0.04 0.81 5.26 86.36 0.45 1.26 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.09 2.13 6.44 -2.38 -0.02 2.11 16 26 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 27 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 28 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.11 2.83 7.40 -2.39 -0.02 2.81 16 31 H 0.11 2.57 6.49 -2.39 -0.02 2.56 16 32 H 0.02 0.72 7.97 -2.39 -0.02 0.70 16 33 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 34 H 0.08 1.37 6.65 -2.39 -0.02 1.35 16 35 H 0.03 0.51 7.99 -2.39 -0.02 0.49 16 36 H 0.09 1.17 2.86 -2.38 -0.01 1.17 16 37 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.84 7.84 -2.39 -0.02 0.82 16 40 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 1.35 6.33 -2.39 -0.02 1.33 16 42 H 0.07 0.95 5.42 -2.39 -0.01 0.94 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.15 7.79 -2.39 -0.02 1.13 16 46 H 0.07 1.24 5.46 -2.38 -0.01 1.22 16 47 H 0.04 0.99 7.50 -2.39 -0.02 0.98 16 Total: -1.00 -73.66 351.10 3.20 -70.46 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.93 Total: 11.21 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.24 Total: 2.86 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -4.95 Total: -99.98 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.05 Total: -32.16 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.66 3.20 -70.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034674367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.121 kcal (2) G-P(sol) polarization free energy of solvation -73.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds