Wall clock time and date at job start Tue Mar 31 2020 05:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46909 * 109.47350 * 2 1 4 4 C 1.46903 * 111.00134 * 171.92938 * 3 2 1 5 5 C 1.53003 * 109.46791 * 296.14492 * 4 3 2 6 6 C 1.50699 * 109.46529 * 185.74770 * 5 4 3 7 7 O 1.21274 * 120.00372 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99722 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99763 * 359.97438 * 8 6 5 10 10 C 1.46497 * 119.99795 * 180.02562 * 8 6 5 11 11 C 1.50695 * 109.47431 * 90.00138 * 10 8 6 12 12 H 1.08005 * 120.00112 * 359.97438 * 11 10 8 13 13 C 1.37878 * 120.00249 * 179.97438 * 11 10 8 14 14 N 1.31517 * 119.99892 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00107 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47011 * 60.00219 * 15 13 11 17 17 H 1.48505 * 109.46907 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47098 * 300.00013 * 15 13 11 19 19 C 1.46906 * 110.99741 * 295.88311 * 3 2 1 20 20 C 1.54892 * 110.48562 * 325.32412 * 19 3 2 21 21 C 1.55230 * 102.58802 * 156.67824 * 20 19 3 22 22 C 1.54268 * 104.23207 * 322.08292 * 21 20 19 23 23 C 1.53879 * 106.59651 * 23.61174 * 22 21 20 24 24 H 1.09005 * 109.46651 * 308.59005 * 1 2 3 25 25 H 1.08996 * 109.46825 * 68.58565 * 1 2 3 26 26 H 1.08990 * 109.47302 * 188.59417 * 1 2 3 27 27 H 1.09004 * 109.47217 * 239.99842 * 2 1 3 28 28 H 1.09005 * 109.47642 * 119.99690 * 2 1 3 29 29 H 1.08995 * 109.46899 * 56.14148 * 4 3 2 30 30 H 1.08997 * 109.46775 * 176.14467 * 4 3 2 31 31 H 1.08995 * 109.46781 * 305.74744 * 5 4 3 32 32 H 1.08999 * 109.47009 * 65.74783 * 5 4 3 33 33 H 1.09003 * 109.46591 * 90.00280 * 9 8 6 34 34 H 1.09004 * 109.47015 * 209.99656 * 9 8 6 35 35 H 1.08993 * 109.47742 * 330.00600 * 9 8 6 36 36 H 1.08999 * 109.46758 * 209.99686 * 10 8 6 37 37 H 1.09000 * 109.47244 * 329.99709 * 10 8 6 38 38 H 0.96999 * 120.00023 * 179.97438 * 14 13 11 39 39 H 1.08992 * 110.42980 * 202.78272 * 19 3 2 40 40 H 1.08999 * 110.75355 * 275.07203 * 20 19 3 41 41 H 1.09000 * 110.75720 * 38.43985 * 20 19 3 42 42 H 1.09000 * 110.46981 * 203.39327 * 21 20 19 43 43 H 1.08999 * 110.58409 * 80.82896 * 21 20 19 44 44 H 1.09000 * 110.03398 * 264.32712 * 22 21 20 45 45 H 1.08997 * 110.07373 * 142.91527 * 22 21 20 46 46 H 1.09005 * 110.02845 * 240.71708 * 23 22 21 47 47 H 1.09001 * 110.02897 * 119.28716 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4754 1.4287 0.1925 5 6 3.8241 0.8698 1.5735 6 6 5.2992 1.0440 1.8279 7 8 6.0022 1.5643 0.9878 8 7 5.8371 0.6225 2.9896 9 6 4.9875 -0.0045 4.0052 10 6 7.2710 0.7923 3.2372 11 6 7.5121 2.1239 3.9002 12 1 6.6804 2.7785 4.1153 13 6 8.7944 2.5066 4.2323 14 7 9.8072 1.7097 3.9699 15 14 9.0933 4.1576 5.0535 16 1 8.3583 4.2094 6.3428 17 1 10.5468 4.3296 5.3045 18 1 8.6126 5.2464 4.1655 19 6 1.6307 2.0809 -1.2339 20 6 1.6401 1.1021 -2.4343 21 6 0.6708 1.7856 -3.4358 22 6 -0.4429 2.3732 -2.5447 23 6 0.1675 2.5610 -1.1447 24 1 -0.3633 0.6410 0.8033 25 1 -0.3633 0.3752 -0.9567 26 1 -0.3633 -1.0160 0.1536 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9617 0.8280 -0.5759 30 1 3.8206 2.4601 0.1202 31 1 3.2582 1.4054 2.3356 32 1 3.5715 -0.1898 1.6109 33 1 4.9574 -1.0814 3.8391 34 1 5.3947 0.1991 4.9956 35 1 3.9786 0.4020 3.9364 36 1 7.6243 -0.0071 3.8885 37 1 7.8101 0.7548 2.2906 38 1 10.7094 1.9791 4.2031 39 1 2.2974 2.9223 -1.4226 40 1 2.6412 1.0190 -2.8572 41 1 1.2624 0.1235 -2.1377 42 1 0.2581 1.0518 -4.1281 43 1 1.1810 2.5791 -3.9819 44 1 -1.2850 1.6828 -2.4954 45 1 -0.7710 3.3342 -2.9408 46 1 -0.3784 1.9616 -0.4160 47 1 0.1362 3.6132 -0.8618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035766104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:07 Heat of formation + Delta-G solvation = -29.651007 kcal Electronic energy + Delta-G solvation = -23014.304936 eV Core-core repulsion = 19811.185057 eV Total energy + Delta-G solvation = -3203.119879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.96200 -38.81163 -35.63319 -34.73579 -32.63893 -31.82913 -30.08929 -28.94996 -27.88834 -26.69773 -25.61565 -23.70508 -22.71019 -21.46927 -20.37999 -19.60638 -18.26693 -16.95554 -16.51157 -15.90922 -15.89006 -15.36673 -15.03324 -14.61627 -14.44723 -14.16665 -13.92188 -13.41664 -13.13424 -12.64093 -12.54975 -12.32648 -12.14034 -12.08654 -11.83835 -11.78878 -11.40935 -11.35120 -11.28352 -11.21222 -11.10274 -10.93247 -10.87751 -10.69828 -10.52307 -10.44430 -10.17169 -10.12974 -9.61458 -8.84369 -8.40998 -8.25049 -7.60173 -6.01895 -4.06647 3.33746 3.37892 3.40148 3.50202 3.67720 4.16434 4.46919 4.47840 4.54287 4.71535 4.93103 5.08731 5.10647 5.25944 5.27742 5.31288 5.33372 5.34661 5.40387 5.42167 5.49039 5.54509 5.62229 5.66009 5.72785 5.81526 5.82059 5.89244 5.93362 5.95494 5.98053 6.07986 6.17218 6.21391 6.22360 6.25981 6.27086 7.07137 7.12473 7.13211 7.47110 7.58024 7.94703 8.26446 8.46594 8.93029 9.14325 9.58428 11.06181 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027496 B = 0.003268 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.099451 B = 8565.179118 C = 8931.043103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.038 3.962 3 N -0.532 5.532 4 C 0.073 3.927 5 C -0.135 4.135 6 C 0.504 3.496 7 O -0.546 6.546 8 N -0.604 5.604 9 C 0.084 3.916 10 C 0.245 3.755 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.896 5.896 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.082 3.918 20 C -0.167 4.167 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.132 4.132 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.437 -4.109 -9.227 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.090 4.090 3 N -0.255 5.255 4 C -0.055 4.055 5 C -0.176 4.176 6 C 0.291 3.709 7 O -0.424 6.424 8 N -0.336 5.336 9 C -0.060 4.060 10 C 0.126 3.874 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.027 4.027 20 C -0.206 4.206 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.170 4.170 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.048 -3.611 -9.217 23.260 hybrid contribution 0.681 0.463 -0.057 0.825 sum -20.367 -3.148 -9.274 22.599 Atomic orbital electron populations 1.22170 0.95382 1.01269 1.02722 1.22282 0.95841 0.89717 1.01123 1.62200 1.12979 1.15009 1.35282 1.21826 0.85849 1.02403 0.95448 1.21668 0.94648 1.02316 0.98938 1.20319 0.89321 0.79004 0.82300 1.90658 1.62968 1.43570 1.45200 1.48160 1.11557 1.58473 1.15409 1.21630 0.94543 0.96398 0.93446 1.19266 0.73892 0.96627 0.97636 1.21413 0.92897 1.03008 1.39178 0.92510 1.24944 0.95868 0.97397 0.95937 1.69927 0.99244 1.36766 1.47582 0.86554 0.76998 0.84120 0.79727 1.20232 1.21184 1.20160 1.22563 0.96915 0.96195 0.87048 1.23394 0.99835 1.00416 0.96910 1.22313 0.96551 0.99631 0.97399 1.22128 0.97952 1.00598 0.95574 1.22596 0.95428 1.01752 0.97187 0.91549 0.91543 0.92896 0.93887 0.90670 0.94272 0.89751 0.88655 0.89960 0.93903 0.90865 0.92305 0.95100 0.93920 0.92685 0.89931 0.91731 0.89784 0.92022 0.91751 0.92091 0.92040 0.89194 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.02 37.16 0.30 -1.01 16 2 C 0.04 0.38 4.99 -3.82 -0.02 0.36 16 3 N -0.53 -6.27 4.53 -224.66 -1.02 -7.28 16 4 C 0.07 1.06 4.26 -3.82 -0.02 1.04 16 5 C -0.14 -2.04 3.98 -27.88 -0.11 -2.15 16 6 C 0.50 10.63 7.67 -10.98 -0.08 10.54 16 7 O -0.55 -13.92 15.48 5.56 0.09 -13.84 16 8 N -0.60 -13.07 2.86 -182.96 -0.52 -13.59 16 9 C 0.08 1.35 10.24 59.85 0.61 1.96 16 10 C 0.25 6.56 5.16 -5.20 -0.03 6.53 16 11 C -0.53 -15.22 9.39 -34.44 -0.32 -15.55 16 12 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 15 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.08 0.88 2.88 -66.05 -0.19 0.69 16 20 C -0.17 -1.60 5.44 -24.55 -0.13 -1.74 16 21 C -0.12 -0.99 6.84 -24.89 -0.17 -1.16 16 22 C -0.12 -0.97 6.28 -25.61 -0.16 -1.13 16 23 C -0.13 -1.21 5.65 -25.61 -0.14 -1.35 16 24 H 0.07 0.57 7.34 -51.93 -0.38 0.19 16 25 H 0.07 0.53 4.21 -51.93 -0.22 0.31 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.43 5.71 -51.93 -0.30 0.14 16 28 H 0.07 0.75 6.17 -51.93 -0.32 0.43 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.39 7.67 -51.93 -0.40 0.99 16 31 H 0.10 1.35 7.40 -51.93 -0.38 0.97 16 32 H 0.08 1.06 6.58 -51.93 -0.34 0.72 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 35 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 39 H 0.08 0.98 7.71 -51.93 -0.40 0.58 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.78 4.44 -51.93 -0.23 0.55 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.43 7.82 -51.93 -0.41 0.02 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.81 4.28 -51.93 -0.22 0.59 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -32.64 353.85 -9.06 -41.70 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -8.09 Total: -1.86 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.57 Total: -1.30 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.80 Total: -47.18 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.64 -9.06 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035766104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.049 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds