Wall clock time and date at job start Tue Mar 31 2020 05:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47111 * 2 1 4 4 C 1.46891 * 111.00332 * 73.23061 * 3 2 1 5 5 C 1.50700 * 109.47175 * 285.44874 * 4 3 2 6 6 H 1.08003 * 120.00267 * 358.23875 * 5 4 3 7 7 C 1.37883 * 120.00156 * 178.24022 * 5 4 3 8 8 N 1.31516 * 119.99646 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99937 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47052 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46784 * 119.99879 * 9 7 5 12 12 H 1.48497 * 109.46974 * 239.99824 * 9 7 5 13 13 C 1.46905 * 110.99952 * 197.18714 * 3 2 1 14 14 H 1.09000 * 109.47115 * 186.03787 * 13 3 2 15 15 C 1.52998 * 109.46879 * 306.04261 * 13 3 2 16 16 C 1.50698 * 109.47095 * 66.03958 * 13 3 2 17 17 O 1.21282 * 120.00388 * 0.02562 * 16 13 3 18 18 N 1.34773 * 119.99823 * 179.97438 * 16 13 3 19 19 C 1.46499 * 119.99986 * 180.27972 * 18 16 13 20 20 C 1.53001 * 109.47110 * 274.72446 * 19 18 16 21 21 C 1.52999 * 109.47363 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47287 * 59.99985 * 21 20 19 23 23 C 1.53001 * 109.46931 * 300.00280 * 22 21 20 24 24 C 1.52998 * 109.47486 * 154.72464 * 19 18 16 25 25 H 1.08995 * 109.46833 * 48.83064 * 1 2 3 26 26 H 1.09002 * 109.46926 * 168.82858 * 1 2 3 27 27 H 1.08998 * 109.46986 * 288.82621 * 1 2 3 28 28 H 1.09001 * 109.47318 * 239.99628 * 2 1 3 29 29 H 1.09004 * 109.47118 * 119.99161 * 2 1 3 30 30 H 1.09002 * 109.47452 * 45.45040 * 4 3 2 31 31 H 1.09005 * 109.47272 * 165.45123 * 4 3 2 32 32 H 0.97000 * 119.99646 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47129 * 59.99907 * 15 13 3 34 34 H 1.09000 * 109.47238 * 180.02562 * 15 13 3 35 35 H 1.09002 * 109.47271 * 300.00065 * 15 13 3 36 36 H 0.96999 * 120.00082 * 0.02562 * 18 16 13 37 37 H 1.08998 * 109.47479 * 34.72176 * 19 18 16 38 38 H 1.09003 * 109.47332 * 299.99821 * 20 19 18 39 39 H 1.09000 * 109.47060 * 60.00050 * 20 19 18 40 40 H 1.08998 * 109.47426 * 299.99852 * 21 20 19 41 41 H 1.09005 * 109.47391 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47631 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47367 * 59.99964 * 22 21 20 44 44 H 1.09000 * 109.47224 * 299.99337 * 23 22 21 45 45 H 1.09008 * 109.46755 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.47006 * 300.00283 * 24 19 18 47 47 H 1.09003 * 109.46995 * 60.00155 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8221 2.0133 1.3130 5 6 0.3637 2.3451 1.4968 6 1 -0.3412 2.1386 0.7049 7 6 -0.0711 2.9124 2.6759 8 7 0.7871 3.1635 3.6404 9 14 -1.8788 3.3244 2.9034 10 1 -2.6305 2.9461 1.6799 11 1 -2.4154 2.5721 4.0658 12 1 -2.0276 4.7820 3.1456 13 6 3.4304 1.4446 -0.4053 14 1 3.7976 2.4648 -0.2940 15 6 4.2549 0.5065 0.4785 16 6 3.5578 1.0191 -1.8453 17 8 2.5706 0.6983 -2.4725 18 7 4.7687 0.9961 -2.4366 19 6 4.8918 0.5884 -3.8383 20 6 4.9927 -0.9361 -3.9190 21 6 5.1206 -1.3620 -5.3830 22 6 6.3779 -0.7350 -5.9886 23 6 6.2770 0.7896 -5.9078 24 6 6.1494 1.2155 -4.4433 25 1 -0.3633 0.6765 -0.7736 26 1 -0.3633 -1.0082 -0.1991 27 1 -0.3633 0.3316 0.9727 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.1397 1.3253 2.0965 31 1 2.4128 2.9275 1.3709 32 1 0.4812 3.5623 4.4700 33 1 3.8877 -0.5138 0.3671 34 1 5.3018 0.5510 0.1781 35 1 4.1628 0.8141 1.5201 36 1 5.5583 1.2530 -1.9351 37 1 4.0156 0.9243 -4.3927 38 1 5.8690 -1.2722 -3.3646 39 1 4.0967 -1.3829 -3.4880 40 1 4.2441 -1.0261 -5.9370 41 1 5.1920 -2.4482 -5.4405 42 1 6.4694 -1.0387 -7.0314 43 1 7.2545 -1.0709 -5.4345 44 1 5.4006 1.1256 -6.4619 45 1 7.1731 1.2363 -6.3389 46 1 6.0776 2.3015 -4.3858 47 1 7.0257 0.8794 -3.8889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:04 Heat of formation + Delta-G solvation = -51.739699 kcal Electronic energy + Delta-G solvation = -23430.239783 eV Core-core repulsion = 20226.162067 eV Total energy + Delta-G solvation = -3204.077717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05190 -38.37439 -36.52723 -34.05499 -32.70412 -31.37103 -30.96657 -29.33376 -28.45397 -26.38144 -24.24736 -22.86366 -22.34705 -22.22563 -20.39495 -20.14056 -18.93915 -16.98632 -16.36370 -16.03934 -15.12741 -14.92475 -14.62090 -14.37026 -14.28137 -14.20217 -13.96713 -13.41113 -13.21826 -12.85593 -12.69235 -12.40368 -12.17550 -11.95184 -11.86153 -11.45594 -11.41172 -11.35664 -11.09720 -10.94560 -10.88825 -10.81386 -10.67166 -10.60597 -10.40937 -10.30769 -10.07090 -9.65765 -8.99334 -8.96188 -8.81969 -8.33887 -7.16666 -5.97451 -3.94930 3.06867 3.31321 3.34853 3.42550 3.48963 4.47285 4.47983 4.54356 4.69636 4.94187 4.97281 5.04009 5.11788 5.24410 5.28616 5.34639 5.37507 5.41926 5.47777 5.53679 5.57342 5.79576 5.83608 5.87712 5.89556 5.93775 6.02070 6.08840 6.14274 6.20023 6.23657 6.31750 6.45749 6.54532 6.67508 6.77600 7.08412 7.20685 7.39639 7.49367 7.71206 7.92323 8.16084 8.27611 8.58361 8.66307 9.12523 9.66734 11.13469 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.003488 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.410803 B = 8024.978385 C = 8222.470363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 N -0.514 5.514 4 C 0.194 3.806 5 C -0.499 4.499 6 H 0.076 0.924 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.894 3.106 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.064 3.936 14 H 0.100 0.900 15 C -0.178 4.178 16 C 0.520 3.480 17 O -0.516 6.516 18 N -0.737 5.737 19 C 0.147 3.853 20 C -0.129 4.129 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.126 4.126 25 H 0.055 0.945 26 H 0.028 0.972 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.017 0.983 30 H -0.003 1.003 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.396 0.604 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.057 -6.997 -15.102 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 N -0.238 5.238 4 C 0.069 3.931 5 C -0.538 4.538 6 H 0.094 0.906 7 C -0.149 4.149 8 N -0.543 5.543 9 Si 0.722 3.278 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.049 4.049 14 H 0.118 0.882 15 C -0.238 4.238 16 C 0.307 3.693 17 O -0.390 6.390 18 N -0.390 5.390 19 C 0.042 3.958 20 C -0.167 4.167 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.015 0.985 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.229 0.771 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.011 -6.884 -15.716 21.533 hybrid contribution 0.048 0.003 1.184 1.185 sum 13.059 -6.881 -14.532 20.714 Atomic orbital electron populations 1.21973 0.95197 0.98566 1.04199 1.21897 0.96749 0.89062 0.98213 1.62102 1.11436 1.17307 1.32947 1.19812 0.97758 0.93422 0.82136 1.21458 0.93349 1.38756 1.00239 0.90627 1.24993 0.97706 0.96107 0.96071 1.69971 1.33941 1.44499 1.05851 0.86496 0.85331 0.77935 0.78063 1.19519 1.21233 1.21150 1.21656 0.92656 1.00200 0.90388 0.88239 1.22419 0.99116 1.00519 1.01709 1.20895 0.82415 0.76604 0.89411 1.90656 1.36798 1.46308 1.65231 1.46165 1.09580 1.70626 1.12658 1.20874 0.98676 0.93861 0.82367 1.21919 1.02301 0.95905 0.96615 1.21497 0.98134 1.00122 0.95778 1.21566 0.98230 0.95371 1.00647 1.21488 1.02071 0.95960 0.95853 1.21814 0.97443 1.00749 0.96407 0.92550 0.95342 0.89926 0.92158 0.96508 0.98527 0.95732 0.93164 0.92266 0.92866 0.90900 0.77063 0.89621 0.92058 0.91378 0.91738 0.91932 0.92042 0.92031 0.91654 0.91715 0.91305 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C 0.07 1.46 4.05 -3.82 -0.02 1.44 16 3 N -0.51 -11.44 4.16 -229.48 -0.96 -12.39 16 4 C 0.19 4.97 4.11 -4.98 -0.02 4.95 16 5 C -0.50 -13.95 7.09 -34.44 -0.24 -14.19 16 6 H 0.08 2.12 5.60 -52.48 -0.29 1.83 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.14 2.72 -68.86 -0.19 0.95 16 14 H 0.10 1.71 7.84 -51.93 -0.41 1.31 16 15 C -0.18 -2.71 8.42 37.16 0.31 -2.40 16 16 C 0.52 8.72 6.67 -10.99 -0.07 8.65 16 17 O -0.52 -10.59 14.16 5.56 0.08 -10.51 16 18 N -0.74 -9.02 4.97 -53.81 -0.27 -9.29 16 19 C 0.15 1.63 2.45 -67.93 -0.17 1.46 16 20 C -0.13 -1.35 5.50 -26.73 -0.15 -1.50 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 22 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 23 C -0.12 -0.85 5.92 -26.70 -0.16 -1.01 16 24 C -0.13 -1.04 5.39 -26.71 -0.14 -1.18 16 25 H 0.06 1.27 7.79 -51.93 -0.40 0.87 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.95 5.76 -51.93 -0.30 1.65 16 28 H 0.06 1.25 5.82 -51.93 -0.30 0.95 16 29 H 0.02 0.36 6.97 -51.93 -0.36 -0.01 16 30 H 0.00 -0.08 7.17 -51.93 -0.37 -0.45 16 31 H 0.02 0.66 7.76 -51.93 -0.40 0.26 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.06 0.93 6.72 -51.93 -0.35 0.58 16 34 H 0.05 0.62 7.57 -51.93 -0.39 0.23 16 35 H 0.07 1.23 7.13 -51.93 -0.37 0.86 16 36 H 0.40 3.82 8.02 -40.82 -0.33 3.49 16 37 H 0.09 1.16 7.57 -51.93 -0.39 0.76 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -31.58 355.15 -9.48 -41.06 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.46 Total: 1.27 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.94 Total: -6.42 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.49 Total: -47.59 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.58 -9.48 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.683 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds