Wall clock time and date at job start Tue Mar 31 2020 05:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47111 * 2 1 4 4 C 1.46891 * 111.00332 * 73.23061 * 3 2 1 5 5 C 1.50700 * 109.47175 * 285.44874 * 4 3 2 6 6 H 1.08003 * 120.00267 * 358.23875 * 5 4 3 7 7 C 1.37883 * 120.00156 * 178.24022 * 5 4 3 8 8 N 1.31516 * 119.99646 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99937 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47052 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46784 * 119.99879 * 9 7 5 12 12 H 1.48497 * 109.46974 * 239.99824 * 9 7 5 13 13 C 1.46905 * 110.99952 * 197.18714 * 3 2 1 14 14 H 1.09000 * 109.47115 * 186.03787 * 13 3 2 15 15 C 1.52998 * 109.46879 * 306.04261 * 13 3 2 16 16 C 1.50698 * 109.47095 * 66.03958 * 13 3 2 17 17 O 1.21282 * 120.00388 * 0.02562 * 16 13 3 18 18 N 1.34773 * 119.99823 * 179.97438 * 16 13 3 19 19 C 1.46499 * 119.99986 * 180.27972 * 18 16 13 20 20 C 1.53001 * 109.47110 * 274.72446 * 19 18 16 21 21 C 1.52999 * 109.47363 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47287 * 59.99985 * 21 20 19 23 23 C 1.53001 * 109.46931 * 300.00280 * 22 21 20 24 24 C 1.52998 * 109.47486 * 154.72464 * 19 18 16 25 25 H 1.08995 * 109.46833 * 48.83064 * 1 2 3 26 26 H 1.09002 * 109.46926 * 168.82858 * 1 2 3 27 27 H 1.08998 * 109.46986 * 288.82621 * 1 2 3 28 28 H 1.09001 * 109.47318 * 239.99628 * 2 1 3 29 29 H 1.09004 * 109.47118 * 119.99161 * 2 1 3 30 30 H 1.09002 * 109.47452 * 45.45040 * 4 3 2 31 31 H 1.09005 * 109.47272 * 165.45123 * 4 3 2 32 32 H 0.97000 * 119.99646 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47129 * 59.99907 * 15 13 3 34 34 H 1.09000 * 109.47238 * 180.02562 * 15 13 3 35 35 H 1.09002 * 109.47271 * 300.00065 * 15 13 3 36 36 H 0.96999 * 120.00082 * 0.02562 * 18 16 13 37 37 H 1.08998 * 109.47479 * 34.72176 * 19 18 16 38 38 H 1.09003 * 109.47332 * 299.99821 * 20 19 18 39 39 H 1.09000 * 109.47060 * 60.00050 * 20 19 18 40 40 H 1.08998 * 109.47426 * 299.99852 * 21 20 19 41 41 H 1.09005 * 109.47391 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47631 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47367 * 59.99964 * 22 21 20 44 44 H 1.09000 * 109.47224 * 299.99337 * 23 22 21 45 45 H 1.09008 * 109.46755 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.47006 * 300.00283 * 24 19 18 47 47 H 1.09003 * 109.46995 * 60.00155 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8221 2.0133 1.3130 5 6 0.3637 2.3451 1.4968 6 1 -0.3412 2.1386 0.7049 7 6 -0.0711 2.9124 2.6759 8 7 0.7871 3.1635 3.6404 9 14 -1.8788 3.3244 2.9034 10 1 -2.6305 2.9461 1.6799 11 1 -2.4154 2.5721 4.0658 12 1 -2.0276 4.7820 3.1456 13 6 3.4304 1.4446 -0.4053 14 1 3.7976 2.4648 -0.2940 15 6 4.2549 0.5065 0.4785 16 6 3.5578 1.0191 -1.8453 17 8 2.5706 0.6983 -2.4725 18 7 4.7687 0.9961 -2.4366 19 6 4.8918 0.5884 -3.8383 20 6 4.9927 -0.9361 -3.9190 21 6 5.1206 -1.3620 -5.3830 22 6 6.3779 -0.7350 -5.9886 23 6 6.2770 0.7896 -5.9078 24 6 6.1494 1.2155 -4.4433 25 1 -0.3633 0.6765 -0.7736 26 1 -0.3633 -1.0082 -0.1991 27 1 -0.3633 0.3316 0.9727 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.1397 1.3253 2.0965 31 1 2.4128 2.9275 1.3709 32 1 0.4812 3.5623 4.4700 33 1 3.8877 -0.5138 0.3671 34 1 5.3018 0.5510 0.1781 35 1 4.1628 0.8141 1.5201 36 1 5.5583 1.2530 -1.9351 37 1 4.0156 0.9243 -4.3927 38 1 5.8690 -1.2722 -3.3646 39 1 4.0967 -1.3829 -3.4880 40 1 4.2441 -1.0261 -5.9370 41 1 5.1920 -2.4482 -5.4405 42 1 6.4694 -1.0387 -7.0314 43 1 7.2545 -1.0709 -5.4345 44 1 5.4006 1.1256 -6.4619 45 1 7.1731 1.2363 -6.3389 46 1 6.0776 2.3015 -4.3858 47 1 7.0257 0.8794 -3.8889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:04 Heat of formation + Delta-G solvation = -72.396606 kcal Electronic energy + Delta-G solvation = -23431.135534 eV Core-core repulsion = 20226.162067 eV Total energy + Delta-G solvation = -3204.973468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31646 -39.43334 -38.04202 -35.19537 -34.74733 -32.92234 -31.66351 -30.71980 -29.89100 -28.22795 -25.64056 -24.27351 -23.60702 -23.25371 -21.80458 -21.06803 -20.29189 -18.74597 -17.66329 -17.49084 -16.56544 -16.28467 -16.08391 -15.81659 -15.61396 -15.27841 -14.96318 -14.78777 -14.55617 -14.20835 -13.81794 -13.61202 -13.41109 -13.29079 -13.15410 -13.08831 -12.95275 -12.70158 -12.65838 -12.48054 -12.21442 -12.11367 -12.04435 -11.93156 -11.57579 -11.44462 -11.31185 -11.16343 -11.05497 -10.52600 -10.42923 -9.94717 -8.94548 -8.14629 -6.19261 1.40683 1.42269 1.55462 1.72508 2.15412 2.44526 3.17407 3.32190 3.71687 3.81493 3.88159 4.07311 4.10808 4.16668 4.25150 4.34025 4.37529 4.49279 4.57645 4.58383 4.59307 4.64495 4.72743 4.76576 4.83207 4.91549 5.03342 5.10969 5.12929 5.13996 5.19200 5.22428 5.24053 5.25874 5.35244 5.40671 5.41791 5.52609 5.61754 5.66849 5.76245 6.12734 6.41443 6.53434 6.76118 6.94276 7.38161 7.46927 8.96006 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034930 B = 0.003488 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.410803 B = 8024.978385 C = 8222.470363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.075 3.925 3 N -0.530 5.530 4 C 0.213 3.787 5 C -0.512 4.512 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.057 3.943 14 H 0.104 0.896 15 C -0.167 4.167 16 C 0.525 3.475 17 O -0.560 6.560 18 N -0.716 5.716 19 C 0.145 3.855 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.119 4.119 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.016 0.984 30 H -0.025 1.025 31 H 0.005 0.995 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.412 0.588 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.673 -7.465 -16.246 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 N -0.254 5.254 4 C 0.087 3.913 5 C -0.551 4.551 6 H 0.088 0.912 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.055 4.055 14 H 0.122 0.878 15 C -0.226 4.226 16 C 0.311 3.689 17 O -0.437 6.437 18 N -0.369 5.369 19 C 0.041 3.959 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.157 4.157 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.034 0.966 30 H -0.007 1.007 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.249 0.751 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.686 -7.354 -16.878 23.550 hybrid contribution -0.387 0.131 1.479 1.534 sum 14.299 -7.223 -15.399 22.221 Atomic orbital electron populations 1.21865 0.95542 0.99764 1.02120 1.21839 0.96460 0.88616 0.98352 1.61952 1.14925 1.17892 1.30678 1.19426 0.96330 0.92211 0.83333 1.21736 0.94425 1.38647 1.00243 0.91185 1.25780 1.01940 0.95975 0.95785 1.70074 1.35880 1.45275 1.06347 0.85496 0.80247 0.77804 0.78109 1.19129 1.20509 1.20575 1.21766 0.90642 1.01341 0.91794 0.87849 1.22296 1.01186 0.99205 0.99902 1.20627 0.83196 0.76330 0.88736 1.90642 1.38511 1.48634 1.65909 1.45973 1.08662 1.68932 1.13288 1.21001 0.99240 0.94627 0.81041 1.21861 1.01387 0.95051 0.97974 1.21496 0.98765 1.00766 0.94409 1.21550 0.97436 0.95018 1.01361 1.21510 1.02584 0.96217 0.95028 1.21787 0.96197 1.00600 0.97072 0.94144 0.92505 0.92264 0.91384 0.96617 1.00731 0.97689 0.92930 0.92682 0.88583 0.92807 0.75106 0.92490 0.90573 0.94487 0.92950 0.91159 0.90909 0.90928 0.92551 0.89840 0.91184 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.91 8.51 71.98 0.61 -5.30 16 2 C 0.08 3.23 4.05 86.30 0.35 3.58 16 3 N -0.53 -24.10 4.16 -879.93 -3.66 -27.77 16 4 C 0.21 11.28 4.11 85.56 0.35 11.63 16 5 C -0.51 -29.26 7.09 25.60 0.18 -29.08 16 6 H 0.07 4.02 5.60 -2.91 -0.02 4.00 16 7 C 0.00 0.15 5.46 84.66 0.46 0.61 16 8 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.06 2.02 2.72 44.17 0.12 2.14 16 14 H 0.10 3.55 7.84 -2.39 -0.02 3.53 16 15 C -0.17 -4.91 8.42 71.98 0.61 -4.31 16 16 C 0.52 17.40 6.67 87.66 0.58 17.99 16 17 O -0.56 -23.31 14.16 -3.04 -0.04 -23.35 16 18 N -0.72 -16.41 4.97 -442.54 -2.20 -18.61 16 19 C 0.15 3.04 2.45 44.99 0.11 3.15 16 20 C -0.12 -2.46 5.50 30.59 0.17 -2.29 16 21 C -0.12 -1.86 5.92 30.59 0.18 -1.68 16 22 C -0.12 -1.35 5.92 30.59 0.18 -1.16 16 23 C -0.12 -1.38 5.92 30.61 0.18 -1.20 16 24 C -0.12 -1.63 5.39 30.61 0.17 -1.47 16 25 H 0.04 1.85 7.79 -2.39 -0.02 1.84 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 2.84 5.76 -2.39 -0.01 2.83 16 28 H 0.07 2.84 5.82 -2.39 -0.01 2.82 16 29 H 0.02 0.67 6.97 -2.39 -0.02 0.66 16 30 H -0.02 -1.41 7.17 -2.39 -0.02 -1.43 16 31 H 0.01 0.28 7.76 -2.38 -0.02 0.26 16 32 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.05 1.67 6.72 -2.39 -0.02 1.65 16 34 H 0.10 1.96 7.57 -2.39 -0.02 1.95 16 35 H 0.05 1.80 7.13 -2.39 -0.02 1.79 16 36 H 0.41 6.78 8.02 -92.71 -0.74 6.03 16 37 H 0.06 1.55 7.57 -2.39 -0.02 1.54 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -69.96 355.15 0.85 -69.10 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.19 Total: 16.44 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.26 Total: -7.38 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -5.58 Total: -102.12 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.04 Total: -23.35 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.96 0.85 -69.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.292 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds