Wall clock time and date at job start Tue Mar 31 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47219 * 2 1 4 4 C 1.46901 * 110.99740 * 287.00687 * 3 2 1 5 5 C 1.50703 * 109.46789 * 79.10740 * 4 3 2 6 6 H 1.08003 * 120.00074 * 357.13304 * 5 4 3 7 7 C 1.37875 * 120.00291 * 177.13311 * 5 4 3 8 8 N 1.31513 * 120.00431 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99572 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47398 * 89.99959 * 9 7 5 11 11 H 1.48504 * 109.47258 * 209.99942 * 9 7 5 12 12 H 1.48500 * 109.47244 * 329.99945 * 9 7 5 13 13 C 1.46909 * 111.00144 * 163.06092 * 3 2 1 14 14 H 1.08999 * 109.46755 * 167.27321 * 13 3 2 15 15 C 1.52996 * 109.47235 * 47.27084 * 13 3 2 16 16 C 1.50703 * 109.46749 * 287.27054 * 13 3 2 17 17 O 1.21284 * 119.99712 * 8.17591 * 16 13 3 18 18 N 1.34773 * 119.99905 * 188.17533 * 16 13 3 19 19 C 1.46501 * 119.99760 * 180.02562 * 18 16 13 20 20 C 1.53003 * 109.47039 * 274.99632 * 19 18 16 21 21 C 1.53002 * 109.46937 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.46982 * 60.00673 * 21 20 19 23 23 C 1.53004 * 109.47087 * 299.99868 * 22 21 20 24 24 C 1.52998 * 109.47114 * 59.99674 * 23 22 21 25 25 H 1.09005 * 109.47232 * 191.35047 * 1 2 3 26 26 H 1.09001 * 109.47129 * 311.34937 * 1 2 3 27 27 H 1.09004 * 109.47112 * 71.35628 * 1 2 3 28 28 H 1.09007 * 109.47212 * 119.99833 * 2 1 3 29 29 H 1.09002 * 109.47323 * 239.99482 * 2 1 3 30 30 H 1.08999 * 109.47223 * 199.10445 * 4 3 2 31 31 H 1.08997 * 109.47541 * 319.10857 * 4 3 2 32 32 H 0.97002 * 120.00043 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47488 * 60.00016 * 15 13 3 34 34 H 1.08999 * 109.46999 * 180.02562 * 15 13 3 35 35 H 1.09010 * 109.46978 * 300.00026 * 15 13 3 36 36 H 0.97000 * 120.00074 * 0.02562 * 18 16 13 37 37 H 1.08997 * 109.47326 * 35.00387 * 19 18 16 38 38 H 1.08997 * 109.47678 * 300.00539 * 20 19 18 39 39 H 1.09005 * 109.46683 * 60.00711 * 20 19 18 40 40 H 1.08997 * 109.47439 * 300.00761 * 21 20 19 41 41 H 1.08997 * 109.47055 * 180.02562 * 21 20 19 42 42 H 1.08994 * 109.47628 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.46886 * 59.99378 * 22 21 20 44 44 H 1.08998 * 109.46735 * 300.00446 * 23 22 21 45 45 H 1.08996 * 109.47310 * 179.97438 * 23 22 21 46 46 H 1.09000 * 109.47506 * 180.02562 * 24 23 22 47 47 H 1.09003 * 109.47377 * 60.00173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8169 2.0149 -1.3115 5 6 0.3795 2.4482 -1.4438 6 1 -0.3246 2.2318 -0.6540 7 6 -0.0366 3.1208 -2.5731 8 7 -1.2911 3.4984 -2.6888 9 14 1.1814 3.4957 -3.9389 10 1 1.1934 2.3748 -4.9130 11 1 0.7806 4.7476 -4.6298 12 1 2.5386 3.6626 -3.3597 13 6 3.4321 1.4440 0.3996 14 1 3.8315 2.4335 0.1772 15 6 4.2253 0.3882 -0.3731 16 6 3.5473 1.1764 1.8782 17 8 2.5755 0.8131 2.5062 18 7 4.7303 1.3410 2.5026 19 6 4.8425 1.0803 3.9398 20 6 4.4243 2.3291 4.7187 21 6 4.5408 2.0567 6.2198 22 6 5.9893 1.7030 6.5630 23 6 6.4076 0.4543 5.7840 24 6 6.2910 0.7266 4.2830 25 1 -0.3634 -1.0076 0.2023 26 1 -0.3633 0.6789 0.7715 27 1 -0.3633 0.3285 -0.9738 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 2.4681 2.8843 -1.4015 31 1 2.0547 1.2997 -2.0989 32 1 -1.5839 3.9713 -3.4835 33 1 4.1419 0.5817 -1.4426 34 1 5.2731 0.4318 -0.0763 35 1 3.8257 -0.6013 -0.1506 36 1 5.5075 1.6319 2.0003 37 1 4.1920 0.2486 4.2101 38 1 5.0748 3.1608 4.4484 39 1 3.3922 2.5808 4.4746 40 1 3.8900 1.2250 6.4898 41 1 4.2424 2.9461 6.7747 42 1 6.0725 1.5093 7.6323 43 1 6.6401 2.5346 6.2929 44 1 5.7567 -0.3773 6.0540 45 1 7.4396 0.2025 6.0281 46 1 6.5885 -0.1631 3.7280 47 1 6.9418 1.5583 4.0129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:06 Heat of formation + Delta-G solvation = -49.001304 kcal Electronic energy + Delta-G solvation = -23430.244957 eV Core-core repulsion = 20226.285986 eV Total energy + Delta-G solvation = -3203.958971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07561 -38.42356 -36.66907 -34.06568 -32.65480 -31.40796 -30.96710 -29.44213 -28.92744 -26.64976 -24.31747 -22.85033 -22.25984 -22.11115 -20.39324 -20.09203 -19.03529 -17.16822 -16.38494 -16.30430 -15.25353 -14.95750 -14.53420 -14.49592 -14.30450 -14.16833 -13.83507 -13.68538 -13.32058 -12.92219 -12.66614 -12.49732 -12.40306 -12.11306 -11.94080 -11.62972 -11.45306 -11.36535 -11.33432 -10.95182 -10.89609 -10.78712 -10.64945 -10.56431 -10.45356 -10.39231 -9.92518 -9.82301 -9.09993 -9.02173 -8.85389 -8.49602 -7.31137 -5.97975 -3.93250 3.02073 3.26029 3.29532 3.37157 3.37743 4.45694 4.46902 4.53186 4.67297 4.78646 4.93238 5.04082 5.05798 5.23520 5.28720 5.29675 5.31460 5.34268 5.40615 5.42697 5.55428 5.75224 5.78860 5.84409 5.88575 5.89864 5.94986 6.03192 6.04023 6.17346 6.20584 6.25259 6.29784 6.48657 6.64093 6.69694 6.79120 6.91355 7.14964 7.46487 7.64509 7.71281 7.98226 8.11015 8.59753 8.73706 9.16157 9.63153 11.14618 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027299 B = 0.003718 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.440721 B = 7529.157785 C = 7599.345680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 N -0.503 5.503 4 C 0.162 3.838 5 C -0.502 4.502 6 H 0.093 0.907 7 C 0.066 3.934 8 N -0.901 5.901 9 Si 0.870 3.130 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.061 3.939 14 H 0.098 0.902 15 C -0.178 4.178 16 C 0.522 3.478 17 O -0.514 6.514 18 N -0.737 5.737 19 C 0.148 3.852 20 C -0.130 4.130 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.126 4.126 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.018 0.982 30 H 0.024 0.976 31 H -0.012 1.012 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.395 0.605 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.509 -5.642 13.656 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 N -0.227 5.227 4 C 0.036 3.964 5 C -0.540 4.540 6 H 0.111 0.889 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.698 3.302 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.052 4.052 14 H 0.116 0.884 15 C -0.237 4.237 16 C 0.308 3.692 17 O -0.387 6.387 18 N -0.390 5.390 19 C 0.043 3.957 20 C -0.169 4.169 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.164 4.164 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.343 -5.555 14.321 23.167 hybrid contribution 1.508 0.098 -1.736 2.301 sum 18.851 -5.457 12.586 23.313 Atomic orbital electron populations 1.21890 0.94556 0.98807 1.04527 1.21946 0.97092 0.88472 0.98310 1.61909 1.11462 1.17624 1.31708 1.20314 0.98889 0.93233 0.83966 1.21252 0.93104 1.34974 1.04685 0.88942 1.24905 0.94935 0.95682 0.97947 1.69889 1.15297 1.40239 1.28631 0.86946 0.82282 0.78055 0.82934 1.20454 1.21276 1.19368 1.21705 0.92498 1.00081 0.90962 0.88391 1.22422 0.99628 1.00124 1.01547 1.20796 0.82248 0.76389 0.89793 1.90669 1.36499 1.44300 1.67259 1.46142 1.12240 1.71448 1.09216 1.20873 0.96534 0.98063 0.80192 1.21933 1.02571 0.97749 0.94665 1.21496 0.96501 1.01688 0.95839 1.21571 0.96824 0.97843 0.99607 1.21475 1.01369 0.98277 0.94223 1.21804 0.95889 1.01834 0.96845 0.95111 0.92202 0.90016 0.91988 0.96385 0.95822 0.99425 0.92790 0.91401 0.92549 0.91825 0.77138 0.89711 0.91993 0.91041 0.91765 0.91828 0.92034 0.92006 0.91698 0.91744 0.91475 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.54 37.15 0.32 -2.73 16 2 C 0.07 1.42 3.90 -3.83 -0.01 1.41 16 3 N -0.50 -10.84 4.07 -229.47 -0.93 -11.78 16 4 C 0.16 3.89 3.36 -4.97 -0.02 3.87 16 5 C -0.50 -14.18 7.84 -34.44 -0.27 -14.45 16 6 H 0.09 2.85 6.06 -52.48 -0.32 2.53 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 9 Si 0.87 21.31 27.53 -169.99 -4.68 16.63 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.26 6.46 56.52 0.37 -5.89 16 13 C 0.06 1.02 2.68 -68.86 -0.18 0.84 16 14 H 0.10 1.57 7.63 -51.93 -0.40 1.17 16 15 C -0.18 -2.48 8.38 37.16 0.31 -2.17 16 16 C 0.52 8.53 6.77 -10.99 -0.07 8.45 16 17 O -0.51 -10.42 14.36 5.55 0.08 -10.35 16 18 N -0.74 -8.76 5.07 -53.80 -0.27 -9.03 16 19 C 0.15 1.61 2.45 -67.93 -0.17 1.44 16 20 C -0.13 -1.43 5.49 -26.73 -0.15 -1.58 16 21 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 22 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 23 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 24 C -0.13 -0.99 5.39 -26.73 -0.14 -1.13 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.40 7.77 -51.93 -0.40 1.00 16 27 H 0.08 1.98 6.10 -51.93 -0.32 1.66 16 28 H 0.06 1.24 6.02 -51.92 -0.31 0.92 16 29 H 0.02 0.36 6.95 -51.93 -0.36 -0.01 16 30 H 0.02 0.57 6.43 -51.93 -0.33 0.23 16 31 H -0.01 -0.28 7.02 -51.93 -0.36 -0.65 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 1.00 7.56 -51.93 -0.39 0.60 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.92 6.56 -51.92 -0.34 0.57 16 36 H 0.40 3.61 8.60 -40.82 -0.35 3.26 16 37 H 0.08 1.11 7.58 -51.93 -0.39 0.71 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -32.37 354.01 -9.19 -41.56 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.53 Total: 1.98 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.96 Total: -7.47 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.43 Total: -47.69 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.68 Total: 16.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.37 -9.19 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.445 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds