Wall clock time and date at job start Tue Mar 31 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47219 * 2 1 4 4 C 1.46901 * 110.99740 * 287.00687 * 3 2 1 5 5 C 1.50703 * 109.46789 * 79.10740 * 4 3 2 6 6 H 1.08003 * 120.00074 * 357.13304 * 5 4 3 7 7 C 1.37875 * 120.00291 * 177.13311 * 5 4 3 8 8 N 1.31513 * 120.00431 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99572 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47398 * 89.99959 * 9 7 5 11 11 H 1.48504 * 109.47258 * 209.99942 * 9 7 5 12 12 H 1.48500 * 109.47244 * 329.99945 * 9 7 5 13 13 C 1.46909 * 111.00144 * 163.06092 * 3 2 1 14 14 H 1.08999 * 109.46755 * 167.27321 * 13 3 2 15 15 C 1.52996 * 109.47235 * 47.27084 * 13 3 2 16 16 C 1.50703 * 109.46749 * 287.27054 * 13 3 2 17 17 O 1.21284 * 119.99712 * 8.17591 * 16 13 3 18 18 N 1.34773 * 119.99905 * 188.17533 * 16 13 3 19 19 C 1.46501 * 119.99760 * 180.02562 * 18 16 13 20 20 C 1.53003 * 109.47039 * 274.99632 * 19 18 16 21 21 C 1.53002 * 109.46937 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.46982 * 60.00673 * 21 20 19 23 23 C 1.53004 * 109.47087 * 299.99868 * 22 21 20 24 24 C 1.52998 * 109.47114 * 59.99674 * 23 22 21 25 25 H 1.09005 * 109.47232 * 191.35047 * 1 2 3 26 26 H 1.09001 * 109.47129 * 311.34937 * 1 2 3 27 27 H 1.09004 * 109.47112 * 71.35628 * 1 2 3 28 28 H 1.09007 * 109.47212 * 119.99833 * 2 1 3 29 29 H 1.09002 * 109.47323 * 239.99482 * 2 1 3 30 30 H 1.08999 * 109.47223 * 199.10445 * 4 3 2 31 31 H 1.08997 * 109.47541 * 319.10857 * 4 3 2 32 32 H 0.97002 * 120.00043 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47488 * 60.00016 * 15 13 3 34 34 H 1.08999 * 109.46999 * 180.02562 * 15 13 3 35 35 H 1.09010 * 109.46978 * 300.00026 * 15 13 3 36 36 H 0.97000 * 120.00074 * 0.02562 * 18 16 13 37 37 H 1.08997 * 109.47326 * 35.00387 * 19 18 16 38 38 H 1.08997 * 109.47678 * 300.00539 * 20 19 18 39 39 H 1.09005 * 109.46683 * 60.00711 * 20 19 18 40 40 H 1.08997 * 109.47439 * 300.00761 * 21 20 19 41 41 H 1.08997 * 109.47055 * 180.02562 * 21 20 19 42 42 H 1.08994 * 109.47628 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.46886 * 59.99378 * 22 21 20 44 44 H 1.08998 * 109.46735 * 300.00446 * 23 22 21 45 45 H 1.08996 * 109.47310 * 179.97438 * 23 22 21 46 46 H 1.09000 * 109.47506 * 180.02562 * 24 23 22 47 47 H 1.09003 * 109.47377 * 60.00173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8169 2.0149 -1.3115 5 6 0.3795 2.4482 -1.4438 6 1 -0.3246 2.2318 -0.6540 7 6 -0.0366 3.1208 -2.5731 8 7 -1.2911 3.4984 -2.6888 9 14 1.1814 3.4957 -3.9389 10 1 1.1934 2.3748 -4.9130 11 1 0.7806 4.7476 -4.6298 12 1 2.5386 3.6626 -3.3597 13 6 3.4321 1.4440 0.3996 14 1 3.8315 2.4335 0.1772 15 6 4.2253 0.3882 -0.3731 16 6 3.5473 1.1764 1.8782 17 8 2.5755 0.8131 2.5062 18 7 4.7303 1.3410 2.5026 19 6 4.8425 1.0803 3.9398 20 6 4.4243 2.3291 4.7187 21 6 4.5408 2.0567 6.2198 22 6 5.9893 1.7030 6.5630 23 6 6.4076 0.4543 5.7840 24 6 6.2910 0.7266 4.2830 25 1 -0.3634 -1.0076 0.2023 26 1 -0.3633 0.6789 0.7715 27 1 -0.3633 0.3285 -0.9738 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 2.4681 2.8843 -1.4015 31 1 2.0547 1.2997 -2.0989 32 1 -1.5839 3.9713 -3.4835 33 1 4.1419 0.5817 -1.4426 34 1 5.2731 0.4318 -0.0763 35 1 3.8257 -0.6013 -0.1506 36 1 5.5075 1.6319 2.0003 37 1 4.1920 0.2486 4.2101 38 1 5.0748 3.1608 4.4484 39 1 3.3922 2.5808 4.4746 40 1 3.8900 1.2250 6.4898 41 1 4.2424 2.9461 6.7747 42 1 6.0725 1.5093 7.6323 43 1 6.6401 2.5346 6.2929 44 1 5.7567 -0.3773 6.0540 45 1 7.4396 0.2025 6.0281 46 1 6.5885 -0.1631 3.7280 47 1 6.9418 1.5583 4.0129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:06 Heat of formation + Delta-G solvation = -71.526602 kcal Electronic energy + Delta-G solvation = -23431.221727 eV Core-core repulsion = 20226.285986 eV Total energy + Delta-G solvation = -3204.935741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28469 -39.46321 -38.09665 -35.16317 -34.70214 -32.90815 -31.66988 -31.10634 -30.06798 -28.36346 -25.57932 -24.07866 -23.58325 -23.20267 -21.73732 -21.07757 -20.33634 -19.00600 -17.77819 -17.48683 -16.47814 -16.24244 -16.18287 -15.81298 -15.45123 -15.33630 -14.96918 -14.86715 -14.71422 -14.50731 -13.75732 -13.59928 -13.45455 -13.36568 -13.27279 -13.09926 -12.95432 -12.69426 -12.59050 -12.33424 -12.21135 -12.14817 -12.05025 -11.76387 -11.61409 -11.52206 -11.35202 -11.17409 -11.11747 -10.68804 -10.48079 -9.94698 -8.94136 -8.18748 -6.19902 1.37219 1.39266 1.49094 1.74664 2.16493 2.39967 3.11549 3.25642 3.72199 3.82921 3.85965 4.07221 4.08521 4.16066 4.24950 4.32446 4.34127 4.48653 4.52958 4.57141 4.59080 4.67477 4.72363 4.74246 4.80326 4.82153 4.91107 5.00369 5.08498 5.13460 5.14019 5.16799 5.21730 5.23617 5.31296 5.34981 5.41327 5.52254 5.59562 5.63187 5.67008 6.06813 6.40916 6.62023 6.78365 6.88201 7.39894 7.41926 8.97448 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027299 B = 0.003718 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.440721 B = 7529.157785 C = 7599.345680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.078 3.922 3 N -0.531 5.531 4 C 0.174 3.826 5 C -0.507 4.507 6 H 0.048 0.952 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.242 1.242 13 C 0.056 3.944 14 H 0.110 0.890 15 C -0.169 4.169 16 C 0.522 3.478 17 O -0.564 6.564 18 N -0.716 5.716 19 C 0.147 3.853 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.116 4.116 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.032 0.968 31 H -0.004 1.004 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.413 0.587 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.030 0.970 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.001 -6.034 13.504 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.050 4.050 3 N -0.255 5.255 4 C 0.048 3.952 5 C -0.545 4.545 6 H 0.066 0.934 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.166 1.166 13 C -0.056 4.056 14 H 0.128 0.872 15 C -0.228 4.228 16 C 0.308 3.692 17 O -0.441 6.441 18 N -0.369 5.369 19 C 0.043 3.957 20 C -0.166 4.166 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.154 4.154 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.014 0.986 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.250 0.750 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.912 -5.951 14.192 26.777 hybrid contribution 0.046 0.211 -1.547 1.562 sum 21.958 -5.740 12.645 25.981 Atomic orbital electron populations 1.21752 0.96192 0.99433 1.01482 1.21854 0.95595 0.88434 0.99085 1.61675 1.15318 1.18155 1.30397 1.20043 0.95881 0.93723 0.85581 1.21499 0.94934 1.34600 1.03513 0.93413 1.25851 0.96942 0.95544 1.01006 1.70068 1.17896 1.41768 1.29768 0.85769 0.80501 0.77843 0.79153 1.19461 1.21300 1.16586 1.21826 0.90183 1.01967 0.91672 0.87221 1.22346 1.01404 0.98357 1.00720 1.20768 0.82794 0.75992 0.89618 1.90660 1.38425 1.46918 1.68079 1.45953 1.11429 1.69716 1.09798 1.20970 0.98502 0.97050 0.79227 1.21884 1.00291 0.98227 0.96217 1.21494 0.98122 1.01471 0.94372 1.21553 0.95107 0.98306 1.00416 1.21500 1.02437 0.97873 0.93499 1.21768 0.93272 1.02841 0.97555 0.92379 0.95196 0.93170 0.91321 0.95055 0.95003 0.98636 0.92760 0.91695 0.88527 0.92416 0.75006 0.92335 0.90795 0.95066 0.92898 0.91530 0.90910 0.91023 0.92432 0.89669 0.90616 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.54 71.98 0.61 -5.32 16 2 C 0.08 3.20 3.90 86.30 0.34 3.53 16 3 N -0.53 -22.84 4.07 -879.91 -3.58 -26.43 16 4 C 0.17 8.25 3.36 85.56 0.29 8.54 16 5 C -0.51 -29.53 7.84 25.60 0.20 -29.33 16 6 H 0.05 3.14 6.06 -2.91 -0.02 3.12 16 7 C 0.00 0.16 5.47 84.65 0.46 0.62 16 8 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 9 Si 0.94 43.64 27.53 68.60 1.89 45.53 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.24 -10.10 6.46 99.48 0.64 -9.46 16 13 C 0.06 1.78 2.68 44.17 0.12 1.90 16 14 H 0.11 3.22 7.63 -2.39 -0.02 3.21 16 15 C -0.17 -4.14 8.38 71.98 0.60 -3.54 16 16 C 0.52 16.61 6.77 87.66 0.59 17.20 16 17 O -0.56 -23.40 14.36 -3.04 -0.04 -23.45 16 18 N -0.72 -15.55 5.07 -442.52 -2.25 -17.79 16 19 C 0.15 3.01 2.45 44.99 0.11 3.12 16 20 C -0.13 -2.74 5.49 30.60 0.17 -2.57 16 21 C -0.12 -2.02 5.92 30.60 0.18 -1.83 16 22 C -0.12 -1.39 5.92 30.60 0.18 -1.21 16 23 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 24 C -0.12 -1.45 5.39 30.59 0.16 -1.29 16 25 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.03 1.48 7.77 -2.39 -0.02 1.46 16 27 H 0.05 2.56 6.10 -2.38 -0.01 2.54 16 28 H 0.07 2.74 6.02 -2.38 -0.01 2.72 16 29 H 0.03 1.20 6.95 -2.39 -0.02 1.18 16 30 H 0.03 1.46 6.43 -2.39 -0.02 1.44 16 31 H 0.00 -0.18 7.02 -2.39 -0.02 -0.20 16 32 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.06 1.66 7.56 -2.39 -0.02 1.64 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.49 6.56 -2.38 -0.02 1.48 16 36 H 0.41 6.02 8.60 -92.71 -0.80 5.22 16 37 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -74.83 354.01 0.59 -74.24 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.07 Total: 19.56 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 4.20 Total: -11.28 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -5.53 Total: -104.60 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.89 Total: 45.53 kcal Total: -74.83 0.59 -74.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.709 kcal (2) G-P(sol) polarization free energy of solvation -74.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds