Wall clock time and date at job start Tue Mar 31 2020 05:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47385 * 2 1 4 4 C 1.46898 * 110.99893 * 74.62321 * 3 2 1 5 5 C 1.50700 * 109.47012 * 285.93447 * 4 3 2 6 6 H 1.08000 * 120.00084 * 358.17424 * 5 4 3 7 7 C 1.37876 * 120.00007 * 178.16855 * 5 4 3 8 8 N 1.31516 * 119.99977 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99934 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47459 * 90.00024 * 9 7 5 11 11 H 1.48506 * 109.46790 * 209.99712 * 9 7 5 12 12 H 1.48495 * 109.47378 * 329.99799 * 9 7 5 13 13 C 1.46899 * 110.99961 * 198.57784 * 3 2 1 14 14 H 1.08993 * 109.46849 * 186.04677 * 13 3 2 15 15 C 1.53007 * 109.47103 * 306.04253 * 13 3 2 16 16 C 1.50692 * 109.47393 * 66.04325 * 13 3 2 17 17 O 1.21287 * 120.00177 * 342.63146 * 16 13 3 18 18 N 1.34780 * 120.00160 * 162.62772 * 16 13 3 19 19 C 1.47599 * 118.64362 * 355.54523 * 18 16 13 20 20 C 1.53939 * 112.07563 * 137.79789 * 19 18 16 21 21 C 1.50875 * 110.09866 * 319.47501 * 20 19 18 22 22 C 1.52572 * 109.35566 * 91.88414 * 21 20 19 23 23 C 1.47090 * 114.32758 * 274.99517 * 22 21 20 24 24 C 1.44523 * 118.60559 * 175.63017 * 18 16 13 25 25 H 1.08997 * 109.47138 * 171.90012 * 1 2 3 26 26 H 1.09007 * 109.47105 * 291.89752 * 1 2 3 27 27 H 1.08999 * 109.46775 * 51.89617 * 1 2 3 28 28 H 1.08997 * 109.47523 * 239.99681 * 2 1 3 29 29 H 1.09002 * 109.47087 * 119.99882 * 2 1 3 30 30 H 1.08995 * 109.47420 * 45.93494 * 4 3 2 31 31 H 1.09000 * 109.47014 * 165.94172 * 4 3 2 32 32 H 0.97001 * 120.00502 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47159 * 304.81711 * 15 13 3 34 34 H 1.08998 * 109.47094 * 64.81318 * 15 13 3 35 35 H 1.09000 * 109.47172 * 184.81544 * 15 13 3 36 36 H 1.09001 * 108.94818 * 17.15456 * 19 18 16 37 37 H 1.08995 * 108.94563 * 258.44264 * 19 18 16 38 38 H 1.09003 * 109.37088 * 79.67250 * 20 19 18 39 39 H 1.09010 * 109.36822 * 199.28741 * 20 19 18 40 40 H 1.08995 * 109.49592 * 211.84948 * 21 20 19 41 41 H 1.09000 * 109.48733 * 331.92783 * 21 20 19 42 42 H 1.09010 * 108.50569 * 36.24070 * 22 21 20 43 43 H 1.08996 * 108.51677 * 153.88877 * 22 21 20 44 44 H 1.09003 * 109.32613 * 183.06158 * 23 22 21 45 45 H 1.08998 * 109.33200 * 302.53081 * 23 22 21 46 46 H 1.09003 * 109.47866 * 150.76241 * 24 18 16 47 47 H 1.09001 * 109.48686 * 30.78352 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8524 2.0025 1.3223 5 6 0.3968 2.3219 1.5470 6 1 -0.3269 2.1165 0.7722 7 6 -0.0109 2.8762 2.7418 8 7 -1.2811 3.1553 2.9376 9 14 1.2410 3.2319 4.0817 10 1 1.7722 4.6081 3.9102 11 1 0.5898 3.1149 5.4112 12 1 2.3562 2.2558 3.9891 13 6 3.4208 1.4479 -0.4369 14 1 3.7906 2.4672 -0.3257 15 6 4.2653 0.5027 0.4201 16 6 3.5152 1.0343 -1.8829 17 8 2.6021 0.4267 -2.4007 18 7 4.6143 1.3394 -2.6008 19 6 5.6637 2.1649 -1.9716 20 6 7.0773 1.6451 -2.2902 21 6 7.1001 0.1376 -2.2347 22 6 6.8179 -0.4239 -3.6250 23 6 5.3887 -0.5483 -3.9496 24 6 4.7150 0.8461 -3.9555 25 1 -0.3633 -1.0174 -0.1448 26 1 -0.3634 0.3833 0.9536 27 1 -0.3633 0.6342 -0.8087 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.1957 1.3115 2.0922 31 1 2.4375 2.9209 1.3711 32 1 -1.5681 3.5450 3.7783 33 1 4.1297 0.7484 1.4734 34 1 3.9511 -0.5260 0.2437 35 1 5.3166 0.6123 0.1539 36 1 5.5193 2.1579 -0.8912 37 1 5.5732 3.1889 -2.3337 38 1 7.3672 1.9746 -3.2880 39 1 7.7822 2.0443 -1.5607 40 1 8.0807 -0.1992 -1.8986 41 1 6.3370 -0.2123 -1.5395 42 1 7.2849 0.2285 -4.3630 43 1 7.2746 -1.4108 -3.6989 44 1 5.2807 -1.0054 -4.9333 45 1 4.9034 -1.1804 -3.2059 46 1 5.3139 1.5360 -4.5500 47 1 3.7178 0.7656 -4.3882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:00 Heat of formation + Delta-G solvation = -22.271197 kcal Electronic energy + Delta-G solvation = -24331.334588 eV Core-core repulsion = 21128.534722 eV Total energy + Delta-G solvation = -3202.799867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54860 -38.07344 -36.53643 -34.08103 -32.92902 -32.44923 -31.16855 -29.08916 -27.09111 -26.73834 -25.66594 -23.75351 -22.10198 -21.74424 -20.63024 -19.68374 -18.44032 -17.21780 -16.72272 -16.16402 -15.68459 -14.94961 -14.59674 -14.51016 -14.30865 -14.05194 -13.90926 -13.46279 -13.33156 -13.14351 -12.81955 -12.52903 -12.40932 -12.01490 -11.88650 -11.59558 -11.51678 -11.30743 -11.19601 -10.91542 -10.89261 -10.85824 -10.74486 -10.57939 -10.52476 -10.29146 -10.05319 -9.84481 -9.02948 -8.81333 -8.54056 -8.44444 -7.29497 -5.98957 -3.94114 2.92047 3.07161 3.28972 3.37056 3.37185 4.39984 4.45070 4.55017 4.64862 4.71756 4.85102 4.91593 4.96332 5.14456 5.28895 5.30888 5.35728 5.38324 5.44771 5.46432 5.58610 5.69467 5.74622 5.79691 5.89151 5.90101 5.92031 6.02358 6.08467 6.16363 6.16929 6.27489 6.36537 6.59230 6.71476 6.78673 6.87014 6.97476 7.21696 7.42301 7.56042 7.70643 7.99818 8.13941 8.50916 8.72904 9.13832 9.62007 11.13170 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025951 B = 0.004765 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.690631 B = 5874.637395 C = 6458.819058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 N -0.507 5.507 4 C 0.162 3.838 5 C -0.505 4.505 6 H 0.096 0.904 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.869 3.131 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.060 3.940 14 H 0.096 0.904 15 C -0.181 4.181 16 C 0.522 3.478 17 O -0.516 6.516 18 N -0.611 5.611 19 C 0.102 3.898 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.135 4.135 24 C 0.119 3.881 25 H 0.028 0.972 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.014 0.986 30 H -0.007 1.007 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.540 -5.009 -10.949 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 N -0.231 5.231 4 C 0.036 3.964 5 C -0.544 4.544 6 H 0.114 0.886 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.697 3.303 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.053 4.053 14 H 0.114 0.886 15 C -0.240 4.240 16 C 0.310 3.690 17 O -0.390 6.390 18 N -0.346 5.346 19 C -0.021 4.021 20 C -0.169 4.169 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.174 4.174 24 C -0.005 4.005 25 H 0.047 0.953 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.032 0.968 30 H 0.011 0.989 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.620 -4.984 -11.443 22.416 hybrid contribution 1.273 -0.069 1.434 1.919 sum 19.893 -5.053 -10.008 22.835 Atomic orbital electron populations 1.22028 0.94797 0.98615 1.04890 1.22141 0.97102 0.88355 0.99178 1.61993 1.12312 1.18527 1.30220 1.20283 0.98808 0.93219 0.84109 1.21290 0.91658 1.39726 1.01682 0.88636 1.24900 0.94939 0.95540 0.98015 1.69886 1.14616 1.44167 1.25311 0.86958 0.82247 0.79030 0.82080 1.20299 1.21303 1.19390 1.21704 0.92507 1.00064 0.91002 0.88617 1.22479 0.99489 1.00683 1.01368 1.20829 0.80988 0.78511 0.88635 1.90610 1.37043 1.39898 1.71439 1.47697 1.19539 1.53569 1.13818 1.22082 0.87091 0.93871 0.99065 1.21768 0.96115 0.96490 1.02504 1.21101 1.01632 0.95218 0.97682 1.20451 0.96888 1.00956 0.96970 1.21204 0.95991 0.98068 1.02105 1.21324 1.01799 0.94147 0.83222 0.95333 0.89008 0.92833 0.90323 0.96755 0.98943 0.96350 0.92763 0.91083 0.91975 0.92262 0.89407 0.91756 0.91542 0.90697 0.92052 0.91345 0.92441 0.92734 0.91244 0.91693 0.91176 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.62 37.16 0.32 -2.94 16 2 C 0.06 1.26 4.03 -3.82 -0.02 1.25 16 3 N -0.51 -11.01 4.29 -229.48 -0.98 -12.00 16 4 C 0.16 3.89 3.20 -4.98 -0.02 3.87 16 5 C -0.51 -14.22 7.71 -34.44 -0.27 -14.48 16 6 H 0.10 2.92 5.86 -52.49 -0.31 2.62 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 9 Si 0.87 21.23 27.50 -169.99 -4.68 16.55 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.29 6.49 56.52 0.37 -5.92 16 13 C 0.06 1.03 1.84 -68.87 -0.13 0.90 16 14 H 0.10 1.53 6.53 -51.93 -0.34 1.19 16 15 C -0.18 -2.65 8.16 37.16 0.30 -2.34 16 16 C 0.52 8.64 6.69 -10.99 -0.07 8.57 16 17 O -0.52 -10.30 13.23 5.55 0.07 -10.23 16 18 N -0.61 -7.63 2.23 -172.59 -0.38 -8.01 16 19 C 0.10 0.98 5.56 -2.95 -0.02 0.96 16 20 C -0.13 -0.97 5.71 -27.31 -0.16 -1.13 16 21 C -0.12 -0.98 5.51 -28.02 -0.15 -1.13 16 22 C -0.12 -0.94 5.16 -29.79 -0.15 -1.09 16 23 C -0.13 -1.33 5.73 -28.58 -0.16 -1.49 16 24 C 0.12 1.31 5.42 -4.11 -0.02 1.29 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 2.31 5.43 -51.93 -0.28 2.03 16 27 H 0.05 1.26 8.00 -51.93 -0.42 0.84 16 28 H 0.08 1.64 5.26 -51.93 -0.27 1.37 16 29 H 0.01 0.30 7.13 -51.93 -0.37 -0.07 16 30 H -0.01 -0.17 5.95 -51.93 -0.31 -0.48 16 31 H 0.02 0.44 7.29 -51.93 -0.38 0.06 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.07 1.11 6.92 -51.93 -0.36 0.75 16 34 H 0.06 0.94 7.03 -51.93 -0.37 0.58 16 35 H 0.06 0.68 5.63 -51.93 -0.29 0.39 16 36 H 0.09 0.86 4.31 -51.93 -0.22 0.64 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.45 7.32 -51.93 -0.38 0.07 16 39 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.69 6.51 -51.93 -0.34 0.35 16 42 H 0.06 0.42 7.36 -51.92 -0.38 0.03 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 47 H 0.08 1.10 7.24 -51.93 -0.38 0.72 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -31.94 337.84 -8.68 -40.63 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.94 Total: 0.60 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.64 Total: -5.94 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.60 Total: -46.71 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.68 Total: 16.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.94 -8.68 -40.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.356 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds