Wall clock time and date at job start Tue Mar 31 2020 05:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47385 * 2 1 4 4 C 1.46898 * 110.99893 * 74.62321 * 3 2 1 5 5 C 1.50700 * 109.47012 * 285.93447 * 4 3 2 6 6 H 1.08000 * 120.00084 * 358.17424 * 5 4 3 7 7 C 1.37876 * 120.00007 * 178.16855 * 5 4 3 8 8 N 1.31516 * 119.99977 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99934 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47459 * 90.00024 * 9 7 5 11 11 H 1.48506 * 109.46790 * 209.99712 * 9 7 5 12 12 H 1.48495 * 109.47378 * 329.99799 * 9 7 5 13 13 C 1.46899 * 110.99961 * 198.57784 * 3 2 1 14 14 H 1.08993 * 109.46849 * 186.04677 * 13 3 2 15 15 C 1.53007 * 109.47103 * 306.04253 * 13 3 2 16 16 C 1.50692 * 109.47393 * 66.04325 * 13 3 2 17 17 O 1.21287 * 120.00177 * 342.63146 * 16 13 3 18 18 N 1.34780 * 120.00160 * 162.62772 * 16 13 3 19 19 C 1.47599 * 118.64362 * 355.54523 * 18 16 13 20 20 C 1.53939 * 112.07563 * 137.79789 * 19 18 16 21 21 C 1.50875 * 110.09866 * 319.47501 * 20 19 18 22 22 C 1.52572 * 109.35566 * 91.88414 * 21 20 19 23 23 C 1.47090 * 114.32758 * 274.99517 * 22 21 20 24 24 C 1.44523 * 118.60559 * 175.63017 * 18 16 13 25 25 H 1.08997 * 109.47138 * 171.90012 * 1 2 3 26 26 H 1.09007 * 109.47105 * 291.89752 * 1 2 3 27 27 H 1.08999 * 109.46775 * 51.89617 * 1 2 3 28 28 H 1.08997 * 109.47523 * 239.99681 * 2 1 3 29 29 H 1.09002 * 109.47087 * 119.99882 * 2 1 3 30 30 H 1.08995 * 109.47420 * 45.93494 * 4 3 2 31 31 H 1.09000 * 109.47014 * 165.94172 * 4 3 2 32 32 H 0.97001 * 120.00502 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47159 * 304.81711 * 15 13 3 34 34 H 1.08998 * 109.47094 * 64.81318 * 15 13 3 35 35 H 1.09000 * 109.47172 * 184.81544 * 15 13 3 36 36 H 1.09001 * 108.94818 * 17.15456 * 19 18 16 37 37 H 1.08995 * 108.94563 * 258.44264 * 19 18 16 38 38 H 1.09003 * 109.37088 * 79.67250 * 20 19 18 39 39 H 1.09010 * 109.36822 * 199.28741 * 20 19 18 40 40 H 1.08995 * 109.49592 * 211.84948 * 21 20 19 41 41 H 1.09000 * 109.48733 * 331.92783 * 21 20 19 42 42 H 1.09010 * 108.50569 * 36.24070 * 22 21 20 43 43 H 1.08996 * 108.51677 * 153.88877 * 22 21 20 44 44 H 1.09003 * 109.32613 * 183.06158 * 23 22 21 45 45 H 1.08998 * 109.33200 * 302.53081 * 23 22 21 46 46 H 1.09003 * 109.47866 * 150.76241 * 24 18 16 47 47 H 1.09001 * 109.48686 * 30.78352 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8524 2.0025 1.3223 5 6 0.3968 2.3219 1.5470 6 1 -0.3269 2.1165 0.7722 7 6 -0.0109 2.8762 2.7418 8 7 -1.2811 3.1553 2.9376 9 14 1.2410 3.2319 4.0817 10 1 1.7722 4.6081 3.9102 11 1 0.5898 3.1149 5.4112 12 1 2.3562 2.2558 3.9891 13 6 3.4208 1.4479 -0.4369 14 1 3.7906 2.4672 -0.3257 15 6 4.2653 0.5027 0.4201 16 6 3.5152 1.0343 -1.8829 17 8 2.6021 0.4267 -2.4007 18 7 4.6143 1.3394 -2.6008 19 6 5.6637 2.1649 -1.9716 20 6 7.0773 1.6451 -2.2902 21 6 7.1001 0.1376 -2.2347 22 6 6.8179 -0.4239 -3.6250 23 6 5.3887 -0.5483 -3.9496 24 6 4.7150 0.8461 -3.9555 25 1 -0.3633 -1.0174 -0.1448 26 1 -0.3634 0.3833 0.9536 27 1 -0.3633 0.6342 -0.8087 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.1957 1.3115 2.0922 31 1 2.4375 2.9209 1.3711 32 1 -1.5681 3.5450 3.7783 33 1 4.1297 0.7484 1.4734 34 1 3.9511 -0.5260 0.2437 35 1 5.3166 0.6123 0.1539 36 1 5.5193 2.1579 -0.8912 37 1 5.5732 3.1889 -2.3337 38 1 7.3672 1.9746 -3.2880 39 1 7.7822 2.0443 -1.5607 40 1 8.0807 -0.1992 -1.8986 41 1 6.3370 -0.2123 -1.5395 42 1 7.2849 0.2285 -4.3630 43 1 7.2746 -1.4108 -3.6989 44 1 5.2807 -1.0054 -4.9333 45 1 4.9034 -1.1804 -3.2059 46 1 5.3139 1.5360 -4.5500 47 1 3.7178 0.7656 -4.3882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:00 Heat of formation + Delta-G solvation = -43.123746 kcal Electronic energy + Delta-G solvation = -24332.238823 eV Core-core repulsion = 21128.534722 eV Total energy + Delta-G solvation = -3203.704101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70563 -39.25621 -37.92115 -35.11322 -34.65504 -33.57484 -32.63322 -30.94941 -28.58156 -27.93981 -26.48347 -25.00155 -24.02795 -22.85939 -21.30601 -21.24102 -19.66984 -18.89045 -18.16702 -17.27866 -16.65412 -16.45705 -15.99989 -15.88536 -15.70996 -15.22879 -15.09589 -14.86587 -14.52486 -14.27175 -14.17045 -13.76631 -13.39788 -13.36036 -13.34552 -13.03880 -12.92779 -12.73892 -12.63493 -12.37589 -12.27001 -12.05074 -11.95142 -11.85232 -11.56946 -11.53471 -11.43226 -11.25353 -11.08130 -10.65826 -10.29279 -9.54845 -8.96815 -8.18493 -6.19351 1.37291 1.39296 1.48968 1.66086 2.03094 2.40080 3.12528 3.22360 3.50498 3.76252 3.96470 4.03641 4.04641 4.09740 4.16322 4.22868 4.38237 4.41012 4.54050 4.56916 4.63113 4.64712 4.73791 4.79247 4.81748 4.84102 4.88712 4.99508 5.04823 5.09555 5.11445 5.14176 5.24868 5.30116 5.32402 5.33741 5.40517 5.51528 5.59597 5.66966 5.82967 6.06357 6.34066 6.44029 6.73438 6.87714 7.28966 7.41026 8.97024 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025951 B = 0.004765 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.690631 B = 5874.637395 C = 6458.819058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 N -0.530 5.530 4 C 0.174 3.826 5 C -0.510 4.510 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.941 3.059 10 H -0.265 1.265 11 H -0.288 1.288 12 H -0.248 1.248 13 C 0.057 3.943 14 H 0.110 0.890 15 C -0.170 4.170 16 C 0.519 3.481 17 O -0.562 6.562 18 N -0.599 5.599 19 C 0.092 3.908 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.127 4.127 24 C 0.115 3.885 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.084 0.916 29 H 0.019 0.981 30 H -0.004 1.004 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.099 0.901 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.838 -4.709 -11.002 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 N -0.255 5.255 4 C 0.047 3.953 5 C -0.549 4.549 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.593 5.593 9 Si 0.765 3.235 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.171 1.171 13 C -0.055 4.055 14 H 0.128 0.872 15 C -0.229 4.229 16 C 0.307 3.693 17 O -0.440 6.440 18 N -0.332 5.332 19 C -0.030 4.030 20 C -0.161 4.161 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.166 4.166 24 C -0.008 4.008 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.102 0.898 29 H 0.037 0.963 30 H 0.013 0.987 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.117 0.883 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 22.988 -4.676 -11.526 26.137 hybrid contribution -0.091 -0.173 1.303 1.318 sum 22.897 -4.849 -10.222 25.540 Atomic orbital electron populations 1.21870 0.96246 0.99251 1.01960 1.22034 0.95742 0.88555 0.99536 1.61795 1.16063 1.18661 1.28936 1.20029 0.95942 0.93802 0.85497 1.21524 0.93394 1.39136 1.00801 0.92792 1.25808 0.97025 0.95395 1.00842 1.70059 1.17170 1.45788 1.26241 0.85806 0.79820 0.79748 0.78132 1.18977 1.21359 1.17119 1.21814 0.90170 1.01672 0.91880 0.87199 1.22373 1.01060 0.99245 1.00237 1.20768 0.81628 0.78331 0.88580 1.90587 1.39009 1.42298 1.72134 1.47731 1.18932 1.52594 1.13949 1.22382 0.87542 0.94106 0.98924 1.21753 0.94592 0.95758 1.03954 1.21124 1.01738 0.95835 0.97082 1.20446 0.95370 1.01815 0.97575 1.21140 0.96928 0.96598 1.01908 1.21464 1.01084 0.95709 0.82567 0.92960 0.92324 0.95083 0.89781 0.96261 0.98671 0.95176 0.92730 0.91713 0.92909 0.88753 0.89464 0.90500 0.90241 0.88652 0.90572 0.93389 0.90706 0.92213 0.90160 0.94538 0.88302 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.35 8.62 71.98 0.62 -5.73 16 2 C 0.07 2.96 4.03 86.30 0.35 3.31 16 3 N -0.53 -23.14 4.29 -879.94 -3.78 -26.92 16 4 C 0.17 8.28 3.20 85.56 0.27 8.55 16 5 C -0.51 -29.53 7.71 25.60 0.20 -29.33 16 6 H 0.05 3.50 5.86 -2.91 -0.02 3.49 16 7 C 0.01 0.33 5.47 84.65 0.46 0.80 16 8 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 9 Si 0.94 43.49 27.50 68.60 1.89 45.38 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.25 -10.49 6.49 99.48 0.65 -9.85 16 13 C 0.06 1.87 1.84 44.17 0.08 1.95 16 14 H 0.11 3.26 6.53 -2.39 -0.02 3.25 16 15 C -0.17 -4.60 8.16 71.98 0.59 -4.01 16 16 C 0.52 16.86 6.69 87.65 0.59 17.45 16 17 O -0.56 -22.95 13.23 -3.05 -0.04 -22.99 16 18 N -0.60 -13.87 2.23 -818.33 -1.82 -15.69 16 19 C 0.09 1.45 5.56 86.49 0.48 1.93 16 20 C -0.12 -1.27 5.71 30.22 0.17 -1.09 16 21 C -0.12 -1.54 5.51 29.76 0.16 -1.37 16 22 C -0.11 -1.50 5.16 28.61 0.15 -1.35 16 23 C -0.13 -2.30 5.73 29.39 0.17 -2.13 16 24 C 0.11 2.36 5.42 87.38 0.47 2.84 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.06 3.12 5.43 -2.38 -0.01 3.11 16 27 H 0.03 1.53 8.00 -2.39 -0.02 1.51 16 28 H 0.08 3.58 5.26 -2.39 -0.01 3.57 16 29 H 0.02 0.80 7.13 -2.39 -0.02 0.79 16 30 H 0.00 -0.20 5.95 -2.39 -0.01 -0.22 16 31 H 0.03 1.37 7.29 -2.39 -0.02 1.35 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.06 1.85 6.92 -2.39 -0.02 1.83 16 34 H 0.05 1.53 7.03 -2.39 -0.02 1.51 16 35 H 0.09 1.86 5.63 -2.39 -0.01 1.84 16 36 H 0.09 1.40 4.31 -2.39 -0.01 1.39 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 0.67 7.32 -2.39 -0.02 0.65 16 39 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 0.82 6.51 -2.39 -0.02 0.81 16 42 H 0.07 0.76 7.36 -2.38 -0.02 0.74 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 1.47 8.07 -2.39 -0.02 1.45 16 47 H 0.06 1.50 7.24 -2.39 -0.02 1.49 16 Total: -1.00 -72.92 337.84 2.19 -70.73 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.88 Total: 17.40 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 4.76 Total: -8.20 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -5.30 Total: -102.31 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.04 Total: -22.99 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.89 Total: 45.38 kcal Total: -72.92 2.19 -70.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.604 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds