Wall clock time and date at job start Tue Mar 31 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47261 * 2 1 4 4 C 1.46896 * 111.00233 * 164.45596 * 3 2 1 5 5 C 1.50704 * 109.47269 * 293.94964 * 4 3 2 6 6 H 1.07996 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99791 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99592 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00336 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46941 * 90.00132 * 9 7 5 11 11 H 1.48505 * 109.46936 * 209.99941 * 9 7 5 12 12 H 1.48491 * 109.47264 * 329.99877 * 9 7 5 13 13 C 1.46907 * 110.99499 * 288.40802 * 3 2 1 14 14 H 1.08998 * 109.47164 * 41.30414 * 13 3 2 15 15 C 1.52999 * 109.47292 * 281.29805 * 13 3 2 16 16 C 1.50706 * 109.46707 * 161.30021 * 13 3 2 17 17 O 1.21277 * 120.00103 * 39.05346 * 16 13 3 18 18 N 1.34777 * 119.99299 * 219.05490 * 16 13 3 19 19 C 1.44571 * 118.64907 * 5.60587 * 18 16 13 20 20 C 1.54308 * 109.91136 * 270.85568 * 19 18 16 21 21 C 1.47092 * 110.29241 * 288.75678 * 20 19 18 22 22 C 1.52571 * 114.32875 * 62.73416 * 21 20 19 23 23 C 1.50885 * 109.35114 * 274.97718 * 22 21 20 24 24 C 1.47609 * 118.63925 * 185.87265 * 18 16 13 25 25 H 1.09002 * 109.47264 * 305.96008 * 1 2 3 26 26 H 1.09002 * 109.46505 * 65.95647 * 1 2 3 27 27 H 1.09000 * 109.46870 * 185.95579 * 1 2 3 28 28 H 1.08992 * 109.47311 * 239.99304 * 2 1 3 29 29 H 1.09007 * 109.46320 * 119.99342 * 2 1 3 30 30 H 1.09002 * 109.47147 * 173.94743 * 4 3 2 31 31 H 1.09005 * 109.47076 * 53.95375 * 4 3 2 32 32 H 0.96997 * 119.99967 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47201 * 173.48076 * 15 13 3 34 34 H 1.09001 * 109.46766 * 293.48475 * 15 13 3 35 35 H 1.09005 * 109.46936 * 53.48253 * 15 13 3 36 36 H 1.09007 * 109.44966 * 30.76737 * 19 18 16 37 37 H 1.09007 * 109.45090 * 150.67931 * 19 18 16 38 38 H 1.08998 * 109.40348 * 168.46792 * 20 19 18 39 39 H 1.09001 * 109.14081 * 48.88451 * 20 19 18 40 40 H 1.09003 * 108.51361 * 301.47572 * 21 20 19 41 41 H 1.09001 * 108.38733 * 183.89683 * 21 20 19 42 42 H 1.09000 * 109.48926 * 155.01705 * 22 21 20 43 43 H 1.08997 * 109.49109 * 34.93906 * 22 21 20 44 44 H 1.08999 * 109.37011 * 331.69585 * 23 22 21 45 45 H 1.09002 * 109.36482 * 212.07470 * 23 22 21 46 46 H 1.09003 * 108.94717 * 258.55561 * 24 18 16 47 47 H 1.09002 * 108.94792 * 17.27008 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4409 1.4409 0.3675 5 6 3.6071 1.0020 1.7996 6 1 2.7434 0.7102 2.3786 7 6 4.8619 0.9719 2.3701 8 7 5.0070 0.5884 3.6198 9 14 6.3558 1.4758 1.3683 10 1 6.5901 2.9335 1.5281 11 1 7.5468 0.7278 1.8452 12 1 6.1182 1.1667 -0.0645 13 6 1.7868 2.0256 -1.3014 14 1 0.7999 1.7482 -1.6715 15 6 2.8533 1.5625 -2.2959 16 6 1.8621 3.5226 -1.1449 17 8 2.6933 4.0146 -0.4115 18 7 1.0057 4.3145 -1.8200 19 6 -0.0507 3.6960 -2.5891 20 6 0.4434 3.4054 -4.0218 21 6 0.5902 4.6602 -4.7751 22 6 1.6297 5.6191 -4.2026 23 6 0.9955 6.4542 -3.1177 24 6 1.1886 5.7775 -1.7484 25 1 -0.3634 0.6035 0.8318 26 1 -0.3632 0.4187 -0.9386 27 1 -0.3633 -1.0221 0.1066 28 1 1.8934 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 3.8051 2.4622 0.2558 31 1 4.0110 0.7786 -0.2841 32 1 5.8897 0.5675 4.0213 33 1 2.6150 1.9449 -3.2884 34 1 3.8277 1.9396 -1.9855 35 1 2.8768 0.4730 -2.3223 36 1 -0.3447 2.7596 -2.1147 37 1 -0.9093 4.3662 -2.6311 38 1 -0.2754 2.7620 -4.5292 39 1 1.4077 2.8997 -3.9716 40 1 -0.3746 5.1670 -4.7948 41 1 0.8721 4.4154 -5.7992 42 1 1.9983 6.2709 -4.9946 43 1 2.4592 5.0489 -3.7846 44 1 -0.0700 6.5618 -3.3205 45 1 1.4601 7.4401 -3.1024 46 1 0.4661 6.1905 -1.0444 47 1 2.1950 5.9911 -1.3883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:02 Heat of formation + Delta-G solvation = -26.231493 kcal Electronic energy + Delta-G solvation = -24489.861779 eV Core-core repulsion = 21286.890181 eV Total energy + Delta-G solvation = -3202.971598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45200 -38.00637 -36.61068 -33.84567 -32.98977 -32.41901 -31.14005 -29.50665 -27.01423 -26.44862 -25.65470 -23.96968 -22.18223 -21.73861 -20.59751 -19.59987 -18.13646 -17.26700 -16.87381 -16.25287 -15.60100 -14.92451 -14.71484 -14.45114 -14.18829 -13.86260 -13.68017 -13.53636 -13.26654 -13.13800 -12.97168 -12.50742 -12.37443 -12.12189 -11.91678 -11.83819 -11.72552 -11.34692 -11.13308 -11.00944 -11.00072 -10.77172 -10.68908 -10.55272 -10.51440 -10.31976 -10.01382 -9.74070 -9.36082 -8.78592 -8.45805 -8.37751 -7.30652 -5.91769 -3.86053 3.05281 3.13616 3.40978 3.46762 3.50466 4.43032 4.56172 4.62380 4.71263 4.78192 4.85686 4.94674 5.01746 5.12205 5.27616 5.38408 5.40527 5.43733 5.50444 5.55490 5.61846 5.67906 5.72689 5.79306 5.84951 5.88617 5.93778 5.95639 5.99482 6.02567 6.04384 6.15016 6.22959 6.28272 6.44933 6.66937 6.73069 6.79222 7.08456 7.19821 7.56017 7.84201 7.98667 8.16082 8.64266 8.79357 9.16213 9.71630 11.21721 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.005569 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.493455 B = 5026.933190 C = 5681.146182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.509 5.509 4 C 0.149 3.851 5 C -0.500 4.500 6 H 0.078 0.922 7 C 0.068 3.932 8 N -0.905 5.905 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.269 1.269 13 C 0.057 3.943 14 H 0.094 0.906 15 C -0.177 4.177 16 C 0.522 3.478 17 O -0.511 6.511 18 N -0.613 5.613 19 C 0.111 3.889 20 C -0.148 4.148 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.129 4.129 24 C 0.113 3.887 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.022 0.978 29 H 0.094 0.906 30 H 0.057 0.943 31 H -0.015 1.015 32 H 0.261 0.739 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 6.898 -18.974 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 N -0.233 5.233 4 C 0.024 3.976 5 C -0.539 4.539 6 H 0.096 0.904 7 C -0.133 4.133 8 N -0.545 5.545 9 Si 0.702 3.298 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.194 1.194 13 C -0.055 4.055 14 H 0.111 0.889 15 C -0.236 4.236 16 C 0.310 3.690 17 O -0.384 6.384 18 N -0.348 5.348 19 C -0.013 4.013 20 C -0.187 4.187 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.167 4.167 24 C -0.009 4.009 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.003 0.997 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.546 7.416 -18.052 22.675 hybrid contribution 1.228 -0.157 -1.136 1.680 sum -10.318 7.259 -19.187 22.963 Atomic orbital electron populations 1.21826 0.96513 1.00803 1.01125 1.22073 0.94203 0.89671 1.01587 1.62034 1.22486 1.16140 1.22684 1.20496 0.82582 0.98092 0.96455 1.21038 0.94488 1.43251 0.95099 0.90398 1.24835 0.98586 0.95108 0.94741 1.69902 1.23160 1.48976 1.12501 0.86871 0.82851 0.79147 0.80950 1.20110 1.21524 1.19421 1.21786 0.99997 0.91408 0.92310 0.88882 1.22407 1.00547 1.02175 0.98427 1.20796 0.80156 0.89258 0.78806 1.90683 1.36303 1.75813 1.35571 1.47693 1.31074 1.05989 1.50038 1.21472 0.90020 0.98744 0.91066 1.21398 1.02789 0.98140 0.96344 1.20423 0.99240 0.96260 0.99250 1.21067 0.98806 0.97884 0.97756 1.21768 1.01185 0.99027 0.94769 1.21732 1.03346 0.79432 0.96394 0.91937 0.94133 0.92974 0.96015 0.88728 0.92504 0.99688 0.92901 0.92441 0.91360 0.91451 0.90032 0.90744 0.90891 0.90973 0.92376 0.92657 0.92139 0.91505 0.91752 0.90923 0.92267 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.87 37.16 0.37 -1.80 16 2 C 0.05 0.99 5.45 -3.82 -0.02 0.97 16 3 N -0.51 -10.94 4.30 -229.47 -0.99 -11.93 16 4 C 0.15 3.85 2.36 -4.98 -0.01 3.84 16 5 C -0.50 -14.93 8.84 -34.44 -0.30 -15.24 16 6 H 0.08 2.50 7.49 -52.49 -0.39 2.11 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.91 -28.89 13.96 55.43 0.77 -28.11 16 9 Si 0.87 23.10 27.47 -169.99 -4.67 18.43 16 10 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.27 -6.85 6.54 56.52 0.37 -6.48 16 13 C 0.06 0.99 1.98 -68.86 -0.14 0.85 16 14 H 0.09 1.32 3.63 -51.93 -0.19 1.13 16 15 C -0.18 -2.83 8.01 37.16 0.30 -2.54 16 16 C 0.52 9.50 6.70 -10.98 -0.07 9.43 16 17 O -0.51 -11.80 13.64 5.56 0.08 -11.72 16 18 N -0.61 -8.34 2.25 -172.88 -0.39 -8.73 16 19 C 0.11 1.12 5.03 -4.39 -0.02 1.10 16 20 C -0.15 -1.28 5.68 -28.88 -0.16 -1.45 16 21 C -0.11 -0.92 5.15 -29.79 -0.15 -1.07 16 22 C -0.12 -1.09 5.51 -28.01 -0.15 -1.24 16 23 C -0.13 -1.16 5.71 -27.30 -0.16 -1.32 16 24 C 0.11 1.39 6.07 -2.94 -0.02 1.38 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.51 6.72 -51.93 -0.35 0.17 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.02 0.38 6.72 -51.93 -0.35 0.03 16 29 H 0.09 2.06 6.59 -51.92 -0.34 1.72 16 30 H 0.06 1.58 4.99 -51.93 -0.26 1.32 16 31 H -0.01 -0.37 6.06 -51.93 -0.31 -0.69 16 32 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 33 H 0.06 0.74 5.51 -51.93 -0.29 0.45 16 34 H 0.07 1.29 6.94 -51.93 -0.36 0.93 16 35 H 0.07 1.05 6.81 -51.93 -0.35 0.69 16 36 H 0.08 0.83 5.77 -51.93 -0.30 0.53 16 37 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.73 5.24 -51.93 -0.27 0.46 16 40 H 0.06 0.42 7.36 -51.93 -0.38 0.03 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.78 7.48 -51.93 -0.39 0.39 16 44 H 0.06 0.50 7.32 -51.93 -0.38 0.12 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.28 7.03 -51.93 -0.37 0.92 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -34.54 339.21 -8.56 -43.10 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.83 Total: -1.02 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.65 Total: -5.12 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.60 Total: -48.77 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.67 Total: 18.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.54 -8.56 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.866 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds