Wall clock time and date at job start Tue Mar 31 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47261 * 2 1 4 4 C 1.46896 * 111.00233 * 164.45596 * 3 2 1 5 5 C 1.50704 * 109.47269 * 293.94964 * 4 3 2 6 6 H 1.07996 * 119.99770 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99791 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99592 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00336 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46941 * 90.00132 * 9 7 5 11 11 H 1.48505 * 109.46936 * 209.99941 * 9 7 5 12 12 H 1.48491 * 109.47264 * 329.99877 * 9 7 5 13 13 C 1.46907 * 110.99499 * 288.40802 * 3 2 1 14 14 H 1.08998 * 109.47164 * 41.30414 * 13 3 2 15 15 C 1.52999 * 109.47292 * 281.29805 * 13 3 2 16 16 C 1.50706 * 109.46707 * 161.30021 * 13 3 2 17 17 O 1.21277 * 120.00103 * 39.05346 * 16 13 3 18 18 N 1.34777 * 119.99299 * 219.05490 * 16 13 3 19 19 C 1.44571 * 118.64907 * 5.60587 * 18 16 13 20 20 C 1.54308 * 109.91136 * 270.85568 * 19 18 16 21 21 C 1.47092 * 110.29241 * 288.75678 * 20 19 18 22 22 C 1.52571 * 114.32875 * 62.73416 * 21 20 19 23 23 C 1.50885 * 109.35114 * 274.97718 * 22 21 20 24 24 C 1.47609 * 118.63925 * 185.87265 * 18 16 13 25 25 H 1.09002 * 109.47264 * 305.96008 * 1 2 3 26 26 H 1.09002 * 109.46505 * 65.95647 * 1 2 3 27 27 H 1.09000 * 109.46870 * 185.95579 * 1 2 3 28 28 H 1.08992 * 109.47311 * 239.99304 * 2 1 3 29 29 H 1.09007 * 109.46320 * 119.99342 * 2 1 3 30 30 H 1.09002 * 109.47147 * 173.94743 * 4 3 2 31 31 H 1.09005 * 109.47076 * 53.95375 * 4 3 2 32 32 H 0.96997 * 119.99967 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47201 * 173.48076 * 15 13 3 34 34 H 1.09001 * 109.46766 * 293.48475 * 15 13 3 35 35 H 1.09005 * 109.46936 * 53.48253 * 15 13 3 36 36 H 1.09007 * 109.44966 * 30.76737 * 19 18 16 37 37 H 1.09007 * 109.45090 * 150.67931 * 19 18 16 38 38 H 1.08998 * 109.40348 * 168.46792 * 20 19 18 39 39 H 1.09001 * 109.14081 * 48.88451 * 20 19 18 40 40 H 1.09003 * 108.51361 * 301.47572 * 21 20 19 41 41 H 1.09001 * 108.38733 * 183.89683 * 21 20 19 42 42 H 1.09000 * 109.48926 * 155.01705 * 22 21 20 43 43 H 1.08997 * 109.49109 * 34.93906 * 22 21 20 44 44 H 1.08999 * 109.37011 * 331.69585 * 23 22 21 45 45 H 1.09002 * 109.36482 * 212.07470 * 23 22 21 46 46 H 1.09003 * 108.94717 * 258.55561 * 24 18 16 47 47 H 1.09002 * 108.94792 * 17.27008 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4409 1.4409 0.3675 5 6 3.6071 1.0020 1.7996 6 1 2.7434 0.7102 2.3786 7 6 4.8619 0.9719 2.3701 8 7 5.0070 0.5884 3.6198 9 14 6.3558 1.4758 1.3683 10 1 6.5901 2.9335 1.5281 11 1 7.5468 0.7278 1.8452 12 1 6.1182 1.1667 -0.0645 13 6 1.7868 2.0256 -1.3014 14 1 0.7999 1.7482 -1.6715 15 6 2.8533 1.5625 -2.2959 16 6 1.8621 3.5226 -1.1449 17 8 2.6933 4.0146 -0.4115 18 7 1.0057 4.3145 -1.8200 19 6 -0.0507 3.6960 -2.5891 20 6 0.4434 3.4054 -4.0218 21 6 0.5902 4.6602 -4.7751 22 6 1.6297 5.6191 -4.2026 23 6 0.9955 6.4542 -3.1177 24 6 1.1886 5.7775 -1.7484 25 1 -0.3634 0.6035 0.8318 26 1 -0.3632 0.4187 -0.9386 27 1 -0.3633 -1.0221 0.1066 28 1 1.8934 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 3.8051 2.4622 0.2558 31 1 4.0110 0.7786 -0.2841 32 1 5.8897 0.5675 4.0213 33 1 2.6150 1.9449 -3.2884 34 1 3.8277 1.9396 -1.9855 35 1 2.8768 0.4730 -2.3223 36 1 -0.3447 2.7596 -2.1147 37 1 -0.9093 4.3662 -2.6311 38 1 -0.2754 2.7620 -4.5292 39 1 1.4077 2.8997 -3.9716 40 1 -0.3746 5.1670 -4.7948 41 1 0.8721 4.4154 -5.7992 42 1 1.9983 6.2709 -4.9946 43 1 2.4592 5.0489 -3.7846 44 1 -0.0700 6.5618 -3.3205 45 1 1.4601 7.4401 -3.1024 46 1 0.4661 6.1905 -1.0444 47 1 2.1950 5.9911 -1.3883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:02 Heat of formation + Delta-G solvation = -50.225910 kcal Electronic energy + Delta-G solvation = -24490.902255 eV Core-core repulsion = 21286.890181 eV Total energy + Delta-G solvation = -3204.012074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67671 -39.20991 -38.03902 -34.99273 -34.65639 -33.79070 -32.42784 -31.31991 -28.26529 -27.95350 -26.55997 -25.25097 -23.93197 -22.99210 -21.39887 -20.90591 -19.39680 -19.04694 -18.49867 -17.46111 -16.66409 -16.60435 -16.00593 -15.71850 -15.43290 -15.35796 -14.99012 -14.78818 -14.55326 -14.38936 -14.20281 -14.08127 -13.65984 -13.33668 -13.21311 -13.08447 -12.99677 -12.80978 -12.60042 -12.44372 -12.27892 -12.12821 -11.84441 -11.82250 -11.66085 -11.46029 -11.44892 -11.33432 -11.21422 -10.80642 -10.35030 -9.56212 -8.97439 -8.29358 -6.28124 1.26123 1.30982 1.39474 1.67308 2.02521 2.31912 3.05200 3.29475 3.55665 3.81306 3.88819 3.97182 4.02595 4.08331 4.17530 4.19492 4.29923 4.41422 4.47426 4.51296 4.63667 4.66887 4.72456 4.75634 4.82462 4.89819 4.92206 5.00076 5.01804 5.05113 5.12357 5.17593 5.26264 5.30765 5.31714 5.32192 5.42857 5.45309 5.56206 5.63178 5.78457 5.98150 6.33805 6.51066 6.66516 6.75666 7.32168 7.34077 8.87659 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.005569 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.493455 B = 5026.933190 C = 5681.146182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.051 3.949 3 N -0.531 5.531 4 C 0.169 3.831 5 C -0.506 4.506 6 H 0.038 0.962 7 C 0.010 3.990 8 N -0.948 5.948 9 Si 0.939 3.061 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.255 1.255 13 C 0.059 3.941 14 H 0.132 0.868 15 C -0.171 4.171 16 C 0.513 3.487 17 O -0.575 6.575 18 N -0.600 5.600 19 C 0.099 3.901 20 C -0.143 4.143 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.118 4.118 24 C 0.108 3.892 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.037 0.963 31 H -0.015 1.015 32 H 0.265 0.735 33 H 0.093 0.907 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.889 7.226 -22.816 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 N -0.256 5.256 4 C 0.042 3.958 5 C -0.544 4.544 6 H 0.057 0.943 7 C -0.186 4.186 8 N -0.590 5.590 9 Si 0.764 3.236 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.179 1.179 13 C -0.052 4.052 14 H 0.149 0.851 15 C -0.230 4.230 16 C 0.302 3.698 17 O -0.453 6.453 18 N -0.333 5.333 19 C -0.023 4.023 20 C -0.181 4.181 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.014 4.014 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.003 0.997 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.628 7.739 -21.950 26.971 hybrid contribution 1.712 -0.220 0.063 1.727 sum -11.916 7.519 -21.887 26.030 Atomic orbital electron populations 1.21744 0.93024 1.02303 1.02098 1.22088 0.97005 0.88107 1.00434 1.61848 1.19588 1.18025 1.26128 1.20062 0.85657 0.96347 0.93707 1.21314 0.93357 1.42696 0.97076 0.94336 1.25693 1.01872 0.95205 0.95866 1.70037 1.24192 1.50456 1.14281 0.85836 0.79249 0.78436 0.80110 1.20506 1.19862 1.17860 1.21922 1.02251 0.90607 0.90431 0.85072 1.22353 0.98253 1.02511 0.99835 1.21083 0.80101 0.90041 0.78625 1.90653 1.39149 1.76784 1.38722 1.47757 1.30438 1.06282 1.48796 1.21848 0.89595 0.99297 0.91560 1.21382 1.02582 0.98845 0.95302 1.20429 0.99531 0.95750 0.99448 1.21092 0.98388 0.98218 0.98005 1.21728 1.02760 0.98857 0.92269 1.21854 1.01604 0.79024 0.98896 0.93695 0.90900 0.90678 0.94083 0.92940 0.94496 0.99713 0.92562 0.88894 0.94824 0.90717 0.89697 0.88139 0.88022 0.92617 0.90525 0.91669 0.90945 0.94600 0.89378 0.90009 0.91731 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.87 71.98 0.71 -3.01 16 2 C 0.05 1.92 5.45 86.30 0.47 2.39 16 3 N -0.53 -23.13 4.30 -879.89 -3.78 -26.92 16 4 C 0.17 9.01 2.36 85.56 0.20 9.21 16 5 C -0.51 -31.74 8.84 25.60 0.23 -31.52 16 6 H 0.04 2.64 7.49 -2.91 -0.02 2.62 16 7 C 0.01 0.65 5.47 84.65 0.46 1.12 16 8 N -0.95 -62.80 13.96 21.45 0.30 -62.50 16 9 Si 0.94 49.13 27.47 68.60 1.88 51.01 16 10 H -0.28 -14.70 7.11 99.48 0.71 -14.00 16 11 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.25 -12.58 6.54 99.48 0.65 -11.93 16 13 C 0.06 1.97 1.98 44.17 0.09 2.06 16 14 H 0.13 3.27 3.63 -2.39 -0.01 3.26 16 15 C -0.17 -5.23 8.01 71.98 0.58 -4.65 16 16 C 0.51 18.72 6.70 87.66 0.59 19.31 16 17 O -0.57 -27.84 13.64 -3.02 -0.04 -27.88 16 18 N -0.60 -15.48 2.25 -819.28 -1.84 -17.32 16 19 C 0.10 1.61 5.03 87.18 0.44 2.05 16 20 C -0.14 -1.82 5.68 29.20 0.17 -1.66 16 21 C -0.11 -1.33 5.15 28.61 0.15 -1.19 16 22 C -0.12 -1.90 5.51 29.76 0.16 -1.73 16 23 C -0.12 -1.82 5.71 30.23 0.17 -1.65 16 24 C 0.11 2.60 6.07 86.49 0.52 3.12 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.54 6.72 -2.39 -0.02 1.52 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.36 6.72 -2.39 -0.02 1.35 16 29 H 0.05 2.39 6.59 -2.38 -0.02 2.37 16 30 H 0.04 2.15 4.99 -2.39 -0.01 2.14 16 31 H -0.01 -0.77 6.06 -2.38 -0.01 -0.78 16 32 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 33 H 0.09 2.15 5.51 -2.39 -0.01 2.13 16 34 H 0.03 1.26 6.94 -2.39 -0.02 1.24 16 35 H 0.07 2.16 6.81 -2.38 -0.02 2.14 16 36 H 0.08 1.34 5.77 -2.38 -0.01 1.32 16 37 H 0.10 1.19 8.06 -2.38 -0.02 1.17 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 0.91 5.24 -2.39 -0.01 0.90 16 40 H 0.08 0.66 7.36 -2.39 -0.02 0.65 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.04 0.80 7.48 -2.39 -0.02 0.78 16 44 H 0.09 0.98 7.32 -2.39 -0.02 0.97 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.05 1.66 7.03 -2.39 -0.02 1.64 16 Total: -1.00 -81.72 339.21 2.34 -79.38 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.89 Total: 10.38 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.94 Total: -6.15 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -5.33 Total: -106.75 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.04 Total: -27.88 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 1.88 Total: 51.01 kcal Total: -81.72 2.34 -79.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.155 kcal (2) G-P(sol) polarization free energy of solvation -81.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds