Wall clock time and date at job start Tue Mar 31 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46900 * 110.99922 * 2 1 4 4 C 1.53003 * 109.47257 * 66.04562 * 3 2 1 5 5 C 1.50702 * 109.47287 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99914 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00035 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99761 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00032 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47403 * 89.99437 * 9 7 5 11 11 H 1.48497 * 109.47133 * 209.99738 * 9 7 5 12 12 H 1.48504 * 109.46886 * 329.99198 * 9 7 5 13 13 C 1.46897 * 111.00062 * 236.04717 * 2 1 3 14 14 C 1.50700 * 109.47159 * 293.95348 * 13 2 1 15 15 O 1.21283 * 119.99722 * 359.97438 * 14 13 2 16 16 N 1.34771 * 120.00216 * 179.97438 * 14 13 2 17 17 C 1.46506 * 120.00084 * 0.02562 * 16 14 13 18 18 C 1.46496 * 120.00157 * 179.97438 * 16 14 13 19 19 C 1.53004 * 109.47487 * 239.99783 * 18 16 14 20 20 C 1.53001 * 109.47239 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.46736 * 60.00467 * 20 19 18 22 22 C 1.53006 * 109.47368 * 299.99585 * 21 20 19 23 23 C 1.53001 * 109.46527 * 60.00290 * 22 21 20 24 24 H 1.09000 * 109.47176 * 183.95821 * 1 2 3 25 25 H 1.09000 * 109.47471 * 303.95437 * 1 2 3 26 26 H 1.08996 * 109.47304 * 63.95345 * 1 2 3 27 27 H 1.08999 * 109.47478 * 186.04860 * 3 2 1 28 28 H 1.09000 * 109.46934 * 306.04777 * 3 2 1 29 29 H 1.08994 * 109.46850 * 300.00164 * 4 3 2 30 30 H 1.09000 * 109.46973 * 60.00238 * 4 3 2 31 31 H 0.97000 * 120.00033 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47093 * 173.95055 * 13 2 1 33 33 H 1.08998 * 109.47193 * 53.95105 * 13 2 1 34 34 H 1.09001 * 109.47060 * 270.00360 * 17 16 14 35 35 H 1.09004 * 109.47073 * 29.99849 * 17 16 14 36 36 H 1.09000 * 109.47212 * 149.99932 * 17 16 14 37 37 H 1.09003 * 109.47380 * 0.02562 * 18 16 14 38 38 H 1.08993 * 109.47015 * 300.00345 * 19 18 16 39 39 H 1.09000 * 109.46385 * 60.00312 * 19 18 16 40 40 H 1.08995 * 109.47114 * 300.00810 * 20 19 18 41 41 H 1.08993 * 109.47156 * 180.02562 * 20 19 18 42 42 H 1.09007 * 109.47077 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.47454 * 59.99930 * 21 20 19 44 44 H 1.08993 * 109.46907 * 300.00168 * 22 21 20 45 45 H 1.09000 * 109.46878 * 179.97438 * 22 21 20 46 46 H 1.09001 * 109.46671 * 179.97438 * 23 22 21 47 47 H 1.08993 * 109.47626 * 60.00318 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1719 3.4642 1.3185 6 1 2.7199 3.8323 0.4637 7 6 1.9660 4.2817 2.4096 8 7 2.4374 5.5095 2.4096 9 14 1.0176 3.6453 3.8877 10 1 1.9605 3.0181 4.8483 11 1 0.3155 4.7745 4.5489 12 1 0.0226 2.6375 3.4409 13 6 1.9954 -0.7659 -1.1376 14 6 1.6369 -2.2204 -0.9729 15 8 1.0054 -2.5832 -0.0030 16 7 2.0179 -3.1179 -1.9032 17 6 2.7812 -2.6797 -3.0745 18 6 1.6699 -4.5319 -1.7428 19 6 2.9495 -5.3688 -1.6857 20 6 2.5859 -6.8455 -1.5175 21 6 1.7326 -7.2988 -2.7038 22 6 0.4530 -6.4619 -2.7610 23 6 0.8166 -4.9853 -2.9291 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 -0.3634 0.4512 -0.9232 27 1 3.0796 1.3445 -0.1083 28 1 1.5610 1.9273 -0.8309 29 1 0.5471 2.0845 1.4265 30 1 2.0657 1.5016 2.1492 31 1 2.2929 6.0845 3.1772 32 1 3.0796 -0.6610 -1.1756 33 1 1.5610 -0.3872 -2.0628 34 1 2.0937 -2.4125 -3.8770 35 1 3.3860 -1.8122 -2.8103 36 1 3.4317 -3.4884 -3.4076 37 1 1.1067 -4.6650 -0.8191 38 1 3.5122 -5.2357 -2.6095 39 1 3.5571 -5.0461 -0.8403 40 1 2.0233 -6.9782 -0.5935 41 1 3.4974 -7.4416 -1.4764 42 1 1.4740 -8.3510 -2.5842 43 1 2.2952 -7.1661 -3.6279 44 1 -0.1096 -6.5948 -1.8369 45 1 -0.1547 -6.7847 -3.6064 46 1 -0.0950 -4.3891 -2.9703 47 1 1.3792 -4.8525 -3.8531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051920124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:59 Heat of formation + Delta-G solvation = -44.872281 kcal Electronic energy + Delta-G solvation = -22835.609800 eV Core-core repulsion = 19631.829876 eV Total energy + Delta-G solvation = -3203.779923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38137 -38.45254 -36.58550 -35.13444 -32.94549 -31.10333 -30.85219 -29.96725 -27.67415 -26.90855 -25.79672 -23.23134 -22.94391 -21.93347 -19.96291 -19.85528 -19.10933 -17.16558 -16.66250 -16.54967 -15.82363 -15.25157 -14.79013 -14.61093 -14.46815 -14.39204 -13.90767 -13.81757 -13.32110 -13.14617 -12.80559 -12.75950 -12.61916 -12.56145 -12.49917 -12.31055 -11.61624 -11.47275 -11.45756 -11.25047 -11.12722 -10.97249 -10.87268 -10.62947 -10.55557 -10.17946 -9.88335 -9.69777 -9.39056 -9.16179 -8.72772 -8.48907 -7.80715 -6.01280 -3.99199 2.71190 2.82252 3.37685 3.44149 3.50994 4.29067 4.40401 4.43621 4.50746 4.57941 4.66148 4.84727 4.89152 4.90772 5.08705 5.14236 5.16502 5.23384 5.29540 5.33663 5.38276 5.39810 5.42948 5.51678 5.69427 5.71164 5.77755 5.79220 5.82104 5.88381 5.93002 6.01654 6.09293 6.19075 6.34179 6.43645 6.54304 6.78072 7.13015 7.28602 7.36448 7.60453 7.65377 7.88198 8.28551 8.55748 9.02279 9.61697 11.11945 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037698 B = 0.002958 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.575202 B = 9463.502607 C = 9670.357261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.529 5.529 3 C 0.072 3.928 4 C -0.008 4.008 5 C -0.520 4.520 6 H 0.071 0.929 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.881 3.119 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.264 1.264 13 C 0.039 3.961 14 C 0.516 3.484 15 O -0.518 6.518 16 N -0.620 5.620 17 C 0.076 3.924 18 C 0.140 3.860 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.126 4.126 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.014 0.986 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -25.220 -14.662 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.254 5.254 3 C -0.055 4.055 4 C -0.045 4.045 5 C -0.559 4.559 6 H 0.089 0.911 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.708 3.292 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.189 1.189 13 C -0.093 4.093 14 C 0.305 3.695 15 O -0.392 6.392 16 N -0.355 5.355 17 C -0.067 4.067 18 C 0.037 3.963 19 C -0.166 4.166 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.164 4.164 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.761 -25.443 -13.585 28.853 hybrid contribution -0.574 0.306 -0.112 0.660 sum -1.335 -25.138 -13.697 28.658 Atomic orbital electron populations 1.22533 0.87277 1.02630 1.00311 1.61806 1.08463 1.15456 1.39637 1.22186 0.98981 0.84560 0.99767 1.19575 0.96740 0.95482 0.92735 1.21075 1.35498 0.95520 1.03806 0.91135 1.24987 0.95295 0.94671 0.98415 1.69916 1.46379 1.07190 1.30903 0.86751 0.80866 0.78525 0.83023 1.20203 1.21530 1.18875 1.22002 1.01907 0.90845 0.94523 1.20835 0.78795 0.88075 0.81834 1.90651 1.38808 1.80238 1.29536 1.47969 1.56493 1.07620 1.23447 1.21775 0.95913 1.00994 0.88043 1.21046 0.95734 0.79444 1.00085 1.21881 0.97411 0.94949 1.02340 1.21497 0.99924 0.95337 0.98762 1.21562 0.96370 0.99260 0.98589 1.21502 0.97512 0.94333 1.02183 1.21864 0.99980 0.96313 0.98254 0.90561 0.90700 0.96744 0.91500 0.95433 0.96423 0.96023 0.92757 0.88147 0.92505 0.92718 0.90765 0.91028 0.88155 0.91696 0.91476 0.91659 0.91706 0.91941 0.92012 0.91679 0.91758 0.91709 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.01 60.06 0.54 0.91 16 2 N -0.53 -9.91 4.50 -244.38 -1.10 -11.01 16 3 C 0.07 1.48 4.90 -3.82 -0.02 1.46 16 4 C -0.01 -0.19 3.97 -27.88 -0.11 -0.30 16 5 C -0.52 -15.10 9.66 -34.44 -0.33 -15.44 16 6 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 9 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 13 C 0.04 0.56 4.00 -4.98 -0.02 0.54 16 14 C 0.52 7.54 7.40 -10.99 -0.08 7.46 16 15 O -0.52 -9.53 13.64 5.55 0.08 -9.45 16 16 N -0.62 -6.71 2.76 -173.92 -0.48 -7.19 16 17 C 0.08 0.56 9.30 59.85 0.56 1.12 16 18 C 0.14 1.38 2.52 -67.93 -0.17 1.21 16 19 C -0.13 -1.04 5.18 -26.73 -0.14 -1.18 16 20 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 21 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 22 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 23 C -0.13 -1.00 5.21 -26.73 -0.14 -1.14 16 24 H 0.08 1.37 5.88 -51.93 -0.31 1.07 16 25 H 0.07 1.45 6.30 -51.93 -0.33 1.13 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 28 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.02 0.44 5.53 -51.93 -0.29 0.16 16 30 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.10 1.29 7.19 -51.93 -0.37 0.91 16 33 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 36 H 0.07 0.42 6.42 -51.93 -0.33 0.08 16 37 H 0.10 1.25 6.90 -51.93 -0.36 0.90 16 38 H 0.06 0.46 6.66 -51.93 -0.35 0.11 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -33.56 355.90 -9.05 -42.61 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -8.52 Total: -4.40 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -0.49 Total: -6.27 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.81 Total: -45.71 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.56 -9.05 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051920124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.263 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds