Wall clock time and date at job start Tue Mar 31 2020 05:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46900 * 110.99922 * 2 1 4 4 C 1.53003 * 109.47257 * 66.04562 * 3 2 1 5 5 C 1.50702 * 109.47287 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99914 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00035 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99761 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00032 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47403 * 89.99437 * 9 7 5 11 11 H 1.48497 * 109.47133 * 209.99738 * 9 7 5 12 12 H 1.48504 * 109.46886 * 329.99198 * 9 7 5 13 13 C 1.46897 * 111.00062 * 236.04717 * 2 1 3 14 14 C 1.50700 * 109.47159 * 293.95348 * 13 2 1 15 15 O 1.21283 * 119.99722 * 359.97438 * 14 13 2 16 16 N 1.34771 * 120.00216 * 179.97438 * 14 13 2 17 17 C 1.46506 * 120.00084 * 0.02562 * 16 14 13 18 18 C 1.46496 * 120.00157 * 179.97438 * 16 14 13 19 19 C 1.53004 * 109.47487 * 239.99783 * 18 16 14 20 20 C 1.53001 * 109.47239 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.46736 * 60.00467 * 20 19 18 22 22 C 1.53006 * 109.47368 * 299.99585 * 21 20 19 23 23 C 1.53001 * 109.46527 * 60.00290 * 22 21 20 24 24 H 1.09000 * 109.47176 * 183.95821 * 1 2 3 25 25 H 1.09000 * 109.47471 * 303.95437 * 1 2 3 26 26 H 1.08996 * 109.47304 * 63.95345 * 1 2 3 27 27 H 1.08999 * 109.47478 * 186.04860 * 3 2 1 28 28 H 1.09000 * 109.46934 * 306.04777 * 3 2 1 29 29 H 1.08994 * 109.46850 * 300.00164 * 4 3 2 30 30 H 1.09000 * 109.46973 * 60.00238 * 4 3 2 31 31 H 0.97000 * 120.00033 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47093 * 173.95055 * 13 2 1 33 33 H 1.08998 * 109.47193 * 53.95105 * 13 2 1 34 34 H 1.09001 * 109.47060 * 270.00360 * 17 16 14 35 35 H 1.09004 * 109.47073 * 29.99849 * 17 16 14 36 36 H 1.09000 * 109.47212 * 149.99932 * 17 16 14 37 37 H 1.09003 * 109.47380 * 0.02562 * 18 16 14 38 38 H 1.08993 * 109.47015 * 300.00345 * 19 18 16 39 39 H 1.09000 * 109.46385 * 60.00312 * 19 18 16 40 40 H 1.08995 * 109.47114 * 300.00810 * 20 19 18 41 41 H 1.08993 * 109.47156 * 180.02562 * 20 19 18 42 42 H 1.09007 * 109.47077 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.47454 * 59.99930 * 21 20 19 44 44 H 1.08993 * 109.46907 * 300.00168 * 22 21 20 45 45 H 1.09000 * 109.46878 * 179.97438 * 22 21 20 46 46 H 1.09001 * 109.46671 * 179.97438 * 23 22 21 47 47 H 1.08993 * 109.47626 * 60.00318 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1719 3.4642 1.3185 6 1 2.7199 3.8323 0.4637 7 6 1.9660 4.2817 2.4096 8 7 2.4374 5.5095 2.4096 9 14 1.0176 3.6453 3.8877 10 1 1.9605 3.0181 4.8483 11 1 0.3155 4.7745 4.5489 12 1 0.0226 2.6375 3.4409 13 6 1.9954 -0.7659 -1.1376 14 6 1.6369 -2.2204 -0.9729 15 8 1.0054 -2.5832 -0.0030 16 7 2.0179 -3.1179 -1.9032 17 6 2.7812 -2.6797 -3.0745 18 6 1.6699 -4.5319 -1.7428 19 6 2.9495 -5.3688 -1.6857 20 6 2.5859 -6.8455 -1.5175 21 6 1.7326 -7.2988 -2.7038 22 6 0.4530 -6.4619 -2.7610 23 6 0.8166 -4.9853 -2.9291 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 -0.3634 0.4512 -0.9232 27 1 3.0796 1.3445 -0.1083 28 1 1.5610 1.9273 -0.8309 29 1 0.5471 2.0845 1.4265 30 1 2.0657 1.5016 2.1492 31 1 2.2929 6.0845 3.1772 32 1 3.0796 -0.6610 -1.1756 33 1 1.5610 -0.3872 -2.0628 34 1 2.0937 -2.4125 -3.8770 35 1 3.3860 -1.8122 -2.8103 36 1 3.4317 -3.4884 -3.4076 37 1 1.1067 -4.6650 -0.8191 38 1 3.5122 -5.2357 -2.6095 39 1 3.5571 -5.0461 -0.8403 40 1 2.0233 -6.9782 -0.5935 41 1 3.4974 -7.4416 -1.4764 42 1 1.4740 -8.3510 -2.5842 43 1 2.2952 -7.1661 -3.6279 44 1 -0.1096 -6.5948 -1.8369 45 1 -0.1547 -6.7847 -3.6064 46 1 -0.0950 -4.3891 -2.9703 47 1 1.3792 -4.8525 -3.8531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051920124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:58 Heat of formation + Delta-G solvation = -66.555990 kcal Electronic energy + Delta-G solvation = -22836.550076 eV Core-core repulsion = 19631.829876 eV Total energy + Delta-G solvation = -3204.720199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35169 -39.36469 -37.96123 -36.02234 -35.08072 -32.44950 -31.69996 -31.09484 -28.84440 -27.70825 -27.50680 -24.69342 -23.54504 -23.00273 -21.61058 -20.62703 -20.05760 -19.04093 -18.03898 -17.40696 -16.93988 -16.46676 -16.13310 -15.99353 -15.55495 -15.20448 -15.07689 -14.85040 -14.67874 -14.49172 -14.09766 -14.00983 -13.67007 -13.35813 -13.32772 -13.19080 -13.08994 -12.90423 -12.62154 -12.52106 -12.11639 -12.06059 -12.01951 -11.86661 -11.63469 -11.52877 -11.34868 -11.27295 -11.18025 -10.76228 -10.62732 -9.59721 -9.22213 -8.30687 -6.33684 1.35547 1.36213 1.49437 1.62089 1.91304 2.35488 3.04945 3.05871 3.55525 3.79493 3.82038 3.99657 4.13663 4.19948 4.24204 4.30441 4.32106 4.36286 4.44302 4.49232 4.53150 4.57302 4.61632 4.68455 4.70844 4.74233 4.85732 4.94056 4.95138 5.07059 5.11037 5.14294 5.19127 5.20762 5.28365 5.33221 5.40058 5.45450 5.51587 5.60739 5.65488 6.05479 6.08655 6.28932 6.42508 6.73315 7.23153 7.31082 8.85569 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037698 B = 0.002958 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.575202 B = 9463.502607 C = 9670.357261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.085 3.915 4 C -0.003 4.003 5 C -0.528 4.528 6 H 0.040 0.960 7 C 0.010 3.990 8 N -0.947 5.947 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.255 1.255 13 C 0.040 3.960 14 C 0.512 3.488 15 O -0.567 6.567 16 N -0.611 5.611 17 C 0.067 3.933 18 C 0.137 3.863 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.118 4.118 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.267 0.733 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 -27.225 -16.275 31.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.042 4.042 4 C -0.041 4.041 5 C -0.567 4.567 6 H 0.059 0.941 7 C -0.187 4.187 8 N -0.588 5.588 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.179 1.179 13 C -0.091 4.091 14 C 0.301 3.699 15 O -0.446 6.446 16 N -0.345 5.345 17 C -0.075 4.075 18 C 0.034 3.966 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.156 4.156 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.556 -27.481 -15.255 31.436 hybrid contribution -0.575 0.906 0.288 1.111 sum -1.131 -26.574 -14.967 30.520 Atomic orbital electron populations 1.22427 0.87161 1.02288 1.00209 1.61646 1.08791 1.14293 1.42483 1.21874 0.99344 0.85646 0.97327 1.19461 0.96213 0.93430 0.94986 1.21379 1.34936 0.97534 1.02807 0.94139 1.25875 0.96394 0.94820 1.01624 1.70041 1.48017 1.08589 1.32146 0.85720 0.79723 0.78301 0.79269 1.19434 1.20636 1.17856 1.22083 1.02950 0.90251 0.93799 1.20887 0.78553 0.88574 0.81910 1.90633 1.41328 1.80929 1.31716 1.48030 1.55501 1.07517 1.23407 1.22080 0.96335 1.02187 0.86908 1.21121 0.96696 0.79257 0.99540 1.21831 0.96244 0.95286 1.02548 1.21506 1.00541 0.94680 0.98764 1.21542 0.95705 0.99520 0.98535 1.21512 0.98141 0.93714 1.02128 1.21802 0.99124 0.96778 0.97930 0.90723 0.92547 0.95248 0.90970 0.95229 0.96545 0.96788 0.92419 0.86338 0.90122 0.91162 0.90036 0.88855 0.91605 0.89706 0.93218 0.93010 0.90474 0.91023 0.90714 0.92971 0.90425 0.93137 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.01 127.69 1.15 2.12 16 2 N -0.55 -19.98 4.50 -927.08 -4.17 -24.15 16 3 C 0.09 3.46 4.90 86.30 0.42 3.88 16 4 C 0.00 -0.16 3.97 29.85 0.12 -0.04 16 5 C -0.53 -31.04 9.66 25.60 0.25 -30.80 16 6 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 7 C 0.01 0.61 5.47 84.65 0.46 1.07 16 8 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 9 Si 0.95 46.52 27.47 68.60 1.88 48.40 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.25 -12.03 6.54 99.48 0.65 -11.38 16 13 C 0.04 1.07 4.00 85.56 0.34 1.42 16 14 C 0.51 14.55 7.40 87.66 0.65 15.20 16 15 O -0.57 -21.24 13.64 -3.04 -0.04 -21.28 16 16 N -0.61 -12.26 2.76 -822.57 -2.27 -14.53 16 17 C 0.07 0.77 9.30 127.77 1.19 1.96 16 18 C 0.14 2.58 2.52 44.99 0.11 2.69 16 19 C -0.12 -1.77 5.18 30.60 0.16 -1.61 16 20 C -0.12 -1.44 5.92 30.59 0.18 -1.25 16 21 C -0.12 -1.12 5.92 30.60 0.18 -0.93 16 22 C -0.12 -1.39 5.92 30.60 0.18 -1.21 16 23 C -0.12 -1.67 5.21 30.60 0.16 -1.51 16 24 H 0.07 2.70 5.88 -2.39 -0.01 2.68 16 25 H 0.06 2.18 6.30 -2.39 -0.02 2.16 16 26 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 2.83 7.93 -2.39 -0.02 2.81 16 28 H 0.03 1.18 8.12 -2.39 -0.02 1.16 16 29 H 0.02 0.82 5.53 -2.39 -0.01 0.80 16 30 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 31 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.12 2.75 7.19 -2.39 -0.02 2.73 16 33 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.86 6.44 -2.38 -0.02 0.84 16 36 H 0.09 0.70 6.42 -2.39 -0.02 0.69 16 37 H 0.07 1.72 6.90 -2.39 -0.02 1.70 16 38 H 0.08 0.91 6.66 -2.39 -0.02 0.89 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 0.88 7.67 -2.39 -0.02 0.86 16 Total: -1.00 -73.94 355.90 2.12 -71.82 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.86 Total: 8.54 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 5.56 Total: -9.03 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -6.14 Total: -98.45 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.28 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.88 Total: 48.40 kcal Total: -73.94 2.12 -71.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051920124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.265 kcal (2) G-P(sol) polarization free energy of solvation -73.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds