Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47072 * 2 1 4 4 C 1.53007 * 109.46802 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46899 * 180.02562 * 4 3 2 6 6 C 1.46897 * 111.00020 * 293.95051 * 5 4 3 7 7 C 1.46897 * 110.99839 * 169.99806 * 5 4 3 8 8 C 1.52998 * 109.46875 * 199.76640 * 7 5 4 9 9 C 1.53116 * 109.52737 * 65.42614 * 8 7 5 10 10 C 1.53036 * 109.28473 * 177.61991 * 9 8 7 11 11 N 1.46847 * 109.52184 * 300.82739 * 10 9 8 12 12 C 1.46902 * 110.99816 * 185.83703 * 11 10 9 13 13 C 1.53007 * 109.47247 * 169.99833 * 12 11 10 14 14 C 1.50697 * 109.46932 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00640 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99521 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00142 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99627 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47224 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46878 * 119.99915 * 18 16 14 21 21 H 1.48496 * 109.47055 * 239.99657 * 18 16 14 22 22 C 1.46847 * 111.20482 * 61.73608 * 11 10 9 23 23 C 1.53032 * 109.52220 * 298.26386 * 22 11 10 24 24 H 1.08995 * 109.47009 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46995 * 300.00218 * 1 2 3 26 26 H 1.09000 * 109.46714 * 60.00142 * 1 2 3 27 27 H 1.09006 * 109.47000 * 240.00141 * 2 1 3 28 28 H 1.08998 * 109.46824 * 120.00395 * 2 1 3 29 29 H 1.08993 * 109.47389 * 60.00023 * 3 2 1 30 30 H 1.09000 * 109.47235 * 299.99539 * 3 2 1 31 31 H 1.08993 * 109.47350 * 59.99729 * 4 3 2 32 32 H 1.09000 * 109.46629 * 299.99640 * 4 3 2 33 33 H 1.09003 * 109.47090 * 301.85164 * 6 5 4 34 34 H 1.09003 * 109.47127 * 61.84564 * 6 5 4 35 35 H 1.08999 * 109.47746 * 181.84631 * 6 5 4 36 36 H 1.09006 * 109.47387 * 79.76735 * 7 5 4 37 37 H 1.09005 * 109.47326 * 319.76443 * 7 5 4 38 38 H 1.09002 * 109.52578 * 305.29640 * 8 7 5 39 39 H 1.09004 * 109.50053 * 57.68294 * 9 8 7 40 40 H 1.08998 * 109.50455 * 297.56573 * 9 8 7 41 41 H 1.08994 * 109.46894 * 180.80828 * 10 9 8 42 42 H 1.09004 * 109.44800 * 60.82752 * 10 9 8 43 43 H 1.08994 * 109.47229 * 49.99860 * 12 11 10 44 44 H 1.09002 * 109.46949 * 289.99192 * 12 11 10 45 45 H 1.09003 * 109.46623 * 300.00111 * 13 12 11 46 46 H 1.09001 * 109.46866 * 59.99541 * 13 12 11 47 47 H 0.97008 * 120.00095 * 179.97438 * 17 16 14 48 48 H 1.09002 * 109.45930 * 58.27219 * 22 11 10 49 49 H 1.08994 * 109.46576 * 178.24154 * 22 11 10 50 50 H 1.09004 * 109.50201 * 299.23094 * 23 22 11 51 51 H 1.09004 * 109.50711 * 179.12375 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.7099 3.5101 -1.2528 7 6 5.5087 2.8734 0.2376 8 6 5.9027 4.2719 0.7169 9 6 5.2692 4.5416 2.0845 10 6 5.7147 5.9173 2.5854 11 7 7.1791 5.9512 2.6890 12 6 7.6348 7.2083 3.2975 13 6 9.1277 7.1083 3.6174 14 6 9.5953 8.3980 4.2410 15 1 8.8975 9.2079 4.3943 16 6 10.9141 8.5441 4.6158 17 7 11.7637 7.5578 4.4296 18 14 11.4935 10.1426 5.3896 19 1 10.3514 11.0863 5.4904 20 1 12.0305 9.8694 6.7468 21 1 12.5591 10.7425 4.5471 22 6 7.8093 5.7418 1.3792 23 6 7.4262 4.3609 0.8424 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9331 0.9287 -0.8908 32 1 3.9337 0.9285 0.8892 33 1 4.1321 2.9623 -2.0953 34 1 2.6253 3.5515 -1.3533 35 1 4.1125 4.5229 -1.2395 36 1 6.0362 2.6446 -0.6885 37 1 5.7756 2.1399 0.9985 38 1 5.5524 5.0148 0.0002 39 1 5.5893 3.7759 2.7912 40 1 4.1833 4.5219 1.9927 41 1 5.2768 6.1064 3.5654 42 1 5.3824 6.6837 1.8850 43 1 7.0778 7.3899 4.2165 44 1 7.4666 8.0305 2.6020 45 1 9.2960 6.2860 4.3128 46 1 9.6848 6.9265 2.6982 47 1 12.6917 7.6607 4.6930 48 1 7.4671 6.5091 0.6848 49 1 8.8925 5.8034 1.4833 50 1 7.7802 3.5923 1.5295 51 1 7.8814 4.2119 -0.1368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052209652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = -27.847747 kcal Electronic energy + Delta-G solvation = -22598.976805 eV Core-core repulsion = 19531.768215 eV Total energy + Delta-G solvation = -3067.208589 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.19630 -37.74918 -35.26404 -33.87548 -32.54809 -30.51980 -29.81850 -28.89846 -27.31659 -25.52085 -23.92640 -22.95785 -22.23494 -21.17118 -20.89795 -19.90333 -19.31366 -16.43981 -16.14152 -15.80082 -15.23094 -15.01569 -14.62638 -14.56757 -14.40762 -13.97737 -13.74608 -13.53806 -13.23683 -12.94894 -12.70438 -12.59571 -12.33692 -12.06856 -11.99172 -11.65591 -11.60430 -11.53314 -11.28441 -11.21023 -11.01304 -10.90773 -10.82697 -10.77768 -10.51321 -10.40751 -10.08895 -10.00757 -9.71859 -9.22397 -9.05116 -8.46482 -8.29344 -7.58481 -5.96166 -3.98073 3.33291 3.40557 3.44817 3.69506 4.44223 4.55802 4.63396 4.66340 4.79032 4.84997 4.97461 5.00178 5.13167 5.18900 5.27612 5.34401 5.34991 5.39707 5.46763 5.51400 5.57982 5.60368 5.62540 5.66418 5.69495 5.75372 5.80053 5.83870 5.95504 5.97552 6.04213 6.08716 6.14044 6.20335 6.35885 6.38406 6.45830 6.54274 6.63673 6.69897 6.91209 6.94458 7.04935 7.61699 7.70001 7.88507 7.97531 8.14551 8.48747 9.09603 9.65263 11.15242 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.045753 B = 0.002390 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.836190 B =11714.813016 C =11875.472423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.116 4.116 4 C 0.055 3.945 5 N -0.540 5.540 6 C 0.022 3.978 7 C 0.061 3.939 8 C -0.080 4.080 9 C -0.097 4.097 10 C 0.054 3.946 11 N -0.538 5.538 12 C 0.063 3.937 13 C 0.027 3.973 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.057 3.943 23 C -0.111 4.111 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.017 0.983 45 H 0.024 0.976 46 H 0.017 0.983 47 H 0.259 0.741 48 H 0.022 0.978 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.238 -13.834 -11.831 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.073 4.073 5 N -0.263 5.263 6 C -0.126 4.126 7 C -0.067 4.067 8 C -0.099 4.099 9 C -0.135 4.135 10 C -0.075 4.075 11 N -0.263 5.263 12 C -0.064 4.064 13 C -0.010 4.010 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.071 4.071 23 C -0.149 4.149 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.043 0.957 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.040 0.960 49 H 0.104 0.896 50 H 0.089 0.911 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.148 -14.012 -11.113 26.201 hybrid contribution 0.612 1.154 -0.812 1.538 sum -18.536 -12.858 -11.925 25.517 Atomic orbital electron populations 1.21757 0.95790 1.01488 1.01866 1.21500 0.95949 0.96887 1.01911 1.21625 0.94635 0.96459 1.02709 1.22173 0.95540 0.88991 1.00617 1.61940 1.14371 1.15407 1.34588 1.22449 1.01346 0.99290 0.89534 1.22213 0.86529 0.98317 0.99620 1.21176 0.95432 0.95569 0.97738 1.21481 0.99818 0.96799 0.95403 1.22086 0.89228 0.96323 0.99829 1.62016 1.05097 1.37148 1.22053 1.22307 1.00247 0.86987 0.96812 1.19106 0.87895 0.97050 0.96933 1.21254 0.94439 1.00076 1.40129 0.92783 1.24999 0.96905 0.96491 0.96003 1.69984 1.03855 1.31436 1.47996 0.86548 0.78675 0.83824 0.79013 1.19796 1.21011 1.21081 1.22050 1.00755 0.94971 0.89317 1.21625 0.94558 0.98421 1.00296 0.92874 0.92608 0.92878 0.92324 0.91927 0.91037 0.92100 0.95247 0.90827 0.95967 0.91441 0.91260 0.94889 0.90841 0.91864 0.91754 0.91181 0.91411 0.96065 0.92219 0.96484 0.95740 0.96521 0.93110 0.95987 0.89647 0.91123 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.87 5.14 -26.73 -0.14 -1.00 16 4 C 0.05 0.46 4.94 -3.82 -0.02 0.44 16 5 N -0.54 -5.30 4.21 -242.91 -1.02 -6.33 16 6 C 0.02 0.20 9.12 60.06 0.55 0.74 16 7 C 0.06 0.64 4.40 -3.83 -0.02 0.63 16 8 C -0.08 -0.99 2.31 -90.50 -0.21 -1.20 16 9 C -0.10 -1.30 5.24 -26.65 -0.14 -1.44 16 10 C 0.05 0.85 5.46 -3.83 -0.02 0.83 16 11 N -0.54 -10.21 4.66 -234.67 -1.09 -11.31 16 12 C 0.06 1.39 4.90 -3.82 -0.02 1.37 16 13 C 0.03 0.73 4.90 -27.88 -0.14 0.60 16 14 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.06 1.00 5.29 -3.84 -0.02 0.98 16 23 C -0.11 -1.55 5.38 -26.65 -0.14 -1.69 16 24 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.45 6.59 -51.93 -0.34 0.11 16 31 H 0.03 0.25 8.11 -51.93 -0.42 -0.18 16 32 H 0.07 0.63 7.83 -51.93 -0.41 0.22 16 33 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 34 H 0.07 0.54 6.56 -51.93 -0.34 0.20 16 35 H 0.07 0.65 6.65 -51.93 -0.35 0.30 16 36 H 0.03 0.34 8.00 -51.93 -0.42 -0.07 16 37 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 38 H 0.06 0.80 6.70 -51.93 -0.35 0.45 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 41 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 1.30 7.99 -51.93 -0.41 0.88 16 44 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 45 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.02 0.46 6.43 -51.93 -0.33 0.13 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.09 1.68 6.21 -51.93 -0.32 1.36 16 50 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -29.98 385.17 -11.49 -41.46 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -10.37 Total: -5.09 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -0.52 Total: -14.99 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -1.38 Total: -44.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.98 -11.49 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052209652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.614 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds