Wall clock time and date at job start Tue Mar 31 2020 05:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47072 * 2 1 4 4 C 1.53007 * 109.46802 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46899 * 180.02562 * 4 3 2 6 6 C 1.46897 * 111.00020 * 293.95051 * 5 4 3 7 7 C 1.46897 * 110.99839 * 169.99806 * 5 4 3 8 8 C 1.52998 * 109.46875 * 199.76640 * 7 5 4 9 9 C 1.53116 * 109.52737 * 65.42614 * 8 7 5 10 10 C 1.53036 * 109.28473 * 177.61991 * 9 8 7 11 11 N 1.46847 * 109.52184 * 300.82739 * 10 9 8 12 12 C 1.46902 * 110.99816 * 185.83703 * 11 10 9 13 13 C 1.53007 * 109.47247 * 169.99833 * 12 11 10 14 14 C 1.50697 * 109.46932 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00640 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99521 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00142 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99627 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47224 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46878 * 119.99915 * 18 16 14 21 21 H 1.48496 * 109.47055 * 239.99657 * 18 16 14 22 22 C 1.46847 * 111.20482 * 61.73608 * 11 10 9 23 23 C 1.53032 * 109.52220 * 298.26386 * 22 11 10 24 24 H 1.08995 * 109.47009 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46995 * 300.00218 * 1 2 3 26 26 H 1.09000 * 109.46714 * 60.00142 * 1 2 3 27 27 H 1.09006 * 109.47000 * 240.00141 * 2 1 3 28 28 H 1.08998 * 109.46824 * 120.00395 * 2 1 3 29 29 H 1.08993 * 109.47389 * 60.00023 * 3 2 1 30 30 H 1.09000 * 109.47235 * 299.99539 * 3 2 1 31 31 H 1.08993 * 109.47350 * 59.99729 * 4 3 2 32 32 H 1.09000 * 109.46629 * 299.99640 * 4 3 2 33 33 H 1.09003 * 109.47090 * 301.85164 * 6 5 4 34 34 H 1.09003 * 109.47127 * 61.84564 * 6 5 4 35 35 H 1.08999 * 109.47746 * 181.84631 * 6 5 4 36 36 H 1.09006 * 109.47387 * 79.76735 * 7 5 4 37 37 H 1.09005 * 109.47326 * 319.76443 * 7 5 4 38 38 H 1.09002 * 109.52578 * 305.29640 * 8 7 5 39 39 H 1.09004 * 109.50053 * 57.68294 * 9 8 7 40 40 H 1.08998 * 109.50455 * 297.56573 * 9 8 7 41 41 H 1.08994 * 109.46894 * 180.80828 * 10 9 8 42 42 H 1.09004 * 109.44800 * 60.82752 * 10 9 8 43 43 H 1.08994 * 109.47229 * 49.99860 * 12 11 10 44 44 H 1.09002 * 109.46949 * 289.99192 * 12 11 10 45 45 H 1.09003 * 109.46623 * 300.00111 * 13 12 11 46 46 H 1.09001 * 109.46866 * 59.99541 * 13 12 11 47 47 H 0.97008 * 120.00095 * 179.97438 * 17 16 14 48 48 H 1.09002 * 109.45930 * 58.27219 * 22 11 10 49 49 H 1.08994 * 109.46576 * 178.24154 * 22 11 10 50 50 H 1.09004 * 109.50201 * 299.23094 * 23 22 11 51 51 H 1.09004 * 109.50711 * 179.12375 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.7099 3.5101 -1.2528 7 6 5.5087 2.8734 0.2376 8 6 5.9027 4.2719 0.7169 9 6 5.2692 4.5416 2.0845 10 6 5.7147 5.9173 2.5854 11 7 7.1791 5.9512 2.6890 12 6 7.6348 7.2083 3.2975 13 6 9.1277 7.1083 3.6174 14 6 9.5953 8.3980 4.2410 15 1 8.8975 9.2079 4.3943 16 6 10.9141 8.5441 4.6158 17 7 11.7637 7.5578 4.4296 18 14 11.4935 10.1426 5.3896 19 1 10.3514 11.0863 5.4904 20 1 12.0305 9.8694 6.7468 21 1 12.5591 10.7425 4.5471 22 6 7.8093 5.7418 1.3792 23 6 7.4262 4.3609 0.8424 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9331 0.9287 -0.8908 32 1 3.9337 0.9285 0.8892 33 1 4.1321 2.9623 -2.0953 34 1 2.6253 3.5515 -1.3533 35 1 4.1125 4.5229 -1.2395 36 1 6.0362 2.6446 -0.6885 37 1 5.7756 2.1399 0.9985 38 1 5.5524 5.0148 0.0002 39 1 5.5893 3.7759 2.7912 40 1 4.1833 4.5219 1.9927 41 1 5.2768 6.1064 3.5654 42 1 5.3824 6.6837 1.8850 43 1 7.0778 7.3899 4.2165 44 1 7.4666 8.0305 2.6020 45 1 9.2960 6.2860 4.3128 46 1 9.6848 6.9265 2.6982 47 1 12.6917 7.6607 4.6930 48 1 7.4671 6.5091 0.6848 49 1 8.8925 5.8034 1.4833 50 1 7.7802 3.5923 1.5295 51 1 7.8814 4.2119 -0.1368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052209652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:20 Heat of formation + Delta-G solvation = -44.824366 kcal Electronic energy + Delta-G solvation = -22599.712966 eV Core-core repulsion = 19531.768215 eV Total energy + Delta-G solvation = -3067.944751 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34241 -38.72325 -36.28377 -35.30308 -34.20716 -31.87571 -31.30042 -29.79424 -28.38892 -26.74433 -25.48466 -24.18149 -23.29898 -22.24988 -21.64746 -21.41511 -20.49624 -18.59418 -16.83917 -16.71847 -16.55054 -16.42289 -15.99245 -15.68922 -15.57256 -15.23174 -14.83407 -14.55167 -14.35532 -14.22116 -13.89586 -13.66409 -13.52068 -13.31219 -13.11874 -12.96889 -12.77110 -12.69666 -12.47005 -12.36677 -12.14234 -12.06570 -11.97046 -11.88534 -11.81729 -11.51947 -11.37624 -11.31367 -11.28461 -11.07598 -10.89789 -10.52938 -9.21384 -9.12326 -8.20144 -6.31473 1.39661 1.40394 1.53774 2.40168 2.95455 3.12515 3.13152 3.82150 3.92774 3.98119 4.03136 4.12094 4.26146 4.32202 4.40172 4.42134 4.43250 4.49142 4.50753 4.59351 4.65059 4.68227 4.72092 4.76719 4.80331 4.83362 4.88521 4.98373 5.00614 5.02992 5.04843 5.09657 5.12362 5.14220 5.17535 5.27670 5.32376 5.36683 5.43234 5.46426 5.51077 5.56703 5.68654 5.79874 6.13309 6.16322 6.21028 6.36315 6.40721 6.85712 7.37409 8.92181 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.045753 B = 0.002390 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.836190 B =11714.813016 C =11875.472423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.056 3.944 5 N -0.548 5.548 6 C 0.023 3.977 7 C 0.068 3.932 8 C -0.072 4.072 9 C -0.086 4.086 10 C 0.053 3.947 11 N -0.550 5.550 12 C 0.079 3.921 13 C 0.037 3.963 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.000 4.000 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.057 3.943 23 C -0.102 4.102 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.016 0.984 45 H -0.009 1.009 46 H -0.005 1.005 47 H 0.264 0.736 48 H 0.025 0.975 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.651 -13.738 -12.418 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.072 4.072 5 N -0.272 5.272 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.091 4.091 9 C -0.124 4.124 10 C -0.074 4.074 11 N -0.275 5.275 12 C -0.049 4.049 13 C 0.000 4.000 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.792 3.208 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.071 4.071 23 C -0.141 4.141 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.010 0.990 46 H 0.013 0.987 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.585 -13.927 -11.710 27.474 hybrid contribution 1.046 1.085 -0.648 1.640 sum -19.540 -12.843 -12.358 26.447 Atomic orbital electron populations 1.21755 0.95392 1.01893 1.01848 1.21482 0.96280 0.96212 1.02072 1.21562 0.93879 0.97031 1.02315 1.22189 0.96099 0.88216 1.00668 1.61920 1.13655 1.16339 1.35300 1.22459 1.01934 0.98913 0.89220 1.22062 0.87333 0.96785 0.99789 1.21081 0.93795 0.96999 0.97226 1.21397 1.00529 0.94833 0.95660 1.22181 0.86818 0.98102 1.00325 1.61959 1.07357 1.35212 1.23009 1.21956 0.97116 0.88574 0.97220 1.18922 0.90982 0.95276 0.94853 1.21661 0.95117 1.00911 1.40614 0.92283 1.25983 0.96996 1.00450 0.96351 1.70119 1.04360 1.33804 1.48826 0.85359 0.78368 0.79020 0.78036 1.18619 1.20281 1.20273 1.22039 0.98796 0.97397 0.88844 1.21559 0.96143 0.95624 1.00745 0.92293 0.92842 0.92689 0.91956 0.91980 0.91924 0.91922 0.94922 0.91022 0.95564 0.90571 0.91735 0.94311 0.90915 0.91620 0.92470 0.89822 0.91227 0.95598 0.92016 0.96591 0.99034 0.98720 0.92750 0.95699 0.92849 0.91879 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.37 5.93 30.60 0.18 -1.19 16 3 C -0.11 -1.44 5.14 30.60 0.16 -1.29 16 4 C 0.06 0.84 4.94 86.30 0.43 1.27 16 5 N -0.55 -9.63 4.21 -922.44 -3.89 -13.52 16 6 C 0.02 0.35 9.12 127.69 1.16 1.52 16 7 C 0.07 1.31 4.40 86.30 0.38 1.69 16 8 C -0.07 -1.66 2.31 -10.71 -0.02 -1.68 16 9 C -0.09 -2.18 5.24 30.65 0.16 -2.02 16 10 C 0.05 1.64 5.46 86.33 0.47 2.11 16 11 N -0.55 -21.11 4.66 -896.37 -4.17 -25.28 16 12 C 0.08 3.54 4.90 86.31 0.42 3.97 16 13 C 0.04 2.06 4.90 29.85 0.15 2.21 16 14 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 0.00 5.46 84.66 0.46 0.47 16 17 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 18 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 C 0.06 2.04 5.29 86.32 0.46 2.49 16 23 C -0.10 -2.79 5.38 30.65 0.16 -2.62 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.80 6.59 -2.39 -0.02 0.79 16 31 H 0.03 0.48 8.11 -2.39 -0.02 0.46 16 32 H 0.07 1.10 7.83 -2.39 -0.02 1.09 16 33 H 0.03 0.39 8.13 -2.39 -0.02 0.37 16 34 H 0.08 1.05 6.56 -2.39 -0.02 1.03 16 35 H 0.06 1.07 6.65 -2.39 -0.02 1.05 16 36 H 0.04 0.71 8.00 -2.38 -0.02 0.69 16 37 H 0.07 1.42 7.73 -2.38 -0.02 1.40 16 38 H 0.07 1.52 6.70 -2.39 -0.02 1.51 16 39 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.08 1.93 7.84 -2.39 -0.02 1.91 16 41 H 0.07 2.10 8.01 -2.39 -0.02 2.08 16 42 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 2.71 7.99 -2.39 -0.02 2.69 16 44 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 45 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 46 H -0.01 -0.32 6.43 -2.39 -0.02 -0.34 16 47 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.05 2.22 6.21 -2.39 -0.01 2.20 16 50 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 51 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.76 385.17 0.60 -64.16 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.83 Total: 10.82 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 5.52 Total: -25.72 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -7.78 Total: -96.41 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.76 0.60 -64.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052209652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.336 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds