Wall clock time and date at job start Tue Mar 31 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47049 * 2 1 4 4 C 1.46902 * 111.00181 * 287.72494 * 3 2 1 5 5 C 1.50700 * 109.46964 * 160.36811 * 4 3 2 6 6 H 1.07999 * 120.00373 * 4.91586 * 5 4 3 7 7 C 1.37884 * 119.99693 * 184.90226 * 5 4 3 8 8 N 1.31514 * 119.99955 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00101 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47125 * 89.99395 * 9 7 5 11 11 H 1.48500 * 109.46819 * 209.99521 * 9 7 5 12 12 H 1.48499 * 109.47140 * 329.99645 * 9 7 5 13 13 C 1.46906 * 110.99816 * 163.77421 * 3 2 1 14 14 C 1.50693 * 109.47149 * 293.95364 * 13 3 2 15 15 O 1.21286 * 120.00157 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99984 * 180.02562 * 14 13 3 17 17 C 1.46498 * 119.99920 * 179.97438 * 16 14 13 18 18 C 1.54066 * 108.88277 * 277.97718 * 17 16 14 19 19 C 1.54058 * 112.81944 * 197.50680 * 18 17 16 20 20 C 1.50476 * 112.50024 * 318.28075 * 19 18 17 21 21 C 1.54245 * 108.51786 * 94.15479 * 20 19 18 22 22 C 1.45543 * 112.40296 * 280.01056 * 21 20 19 23 23 C 1.50472 * 108.87716 * 154.99865 * 17 16 14 24 24 H 1.09005 * 109.47058 * 179.20605 * 1 2 3 25 25 H 1.08991 * 109.47038 * 299.21320 * 1 2 3 26 26 H 1.09001 * 109.47010 * 59.21623 * 1 2 3 27 27 H 1.09003 * 109.47358 * 239.99829 * 2 1 3 28 28 H 1.09002 * 109.47052 * 119.99910 * 2 1 3 29 29 H 1.09000 * 109.47377 * 280.37066 * 4 3 2 30 30 H 1.09002 * 109.47053 * 40.37411 * 4 3 2 31 31 H 0.96997 * 120.00705 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46814 * 173.95340 * 13 3 2 33 33 H 1.09002 * 109.47355 * 53.95387 * 13 3 2 34 34 H 0.96997 * 119.99756 * 0.02562 * 16 14 13 35 35 H 1.09008 * 108.77079 * 36.49144 * 17 16 14 36 36 H 1.08997 * 108.81252 * 318.37277 * 18 17 16 37 37 H 1.09006 * 108.81022 * 76.75376 * 18 17 16 38 38 H 1.09005 * 108.87769 * 197.50376 * 19 18 17 39 39 H 1.08998 * 108.87835 * 79.06521 * 19 18 17 40 40 H 1.08998 * 109.62668 * 334.44519 * 20 19 18 41 41 H 1.09000 * 109.63134 * 213.86254 * 20 19 18 42 42 H 1.08997 * 108.89541 * 40.76362 * 21 20 19 43 43 H 1.08999 * 108.89207 * 159.35694 * 21 20 19 44 44 H 1.09001 * 108.89643 * 182.68957 * 22 21 20 45 45 H 1.09001 * 108.89666 * 301.18534 * 22 21 20 46 46 H 1.09001 * 109.62588 * 95.21504 * 23 17 16 47 47 H 1.08998 * 109.78603 * 334.73637 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8015 2.0205 -1.3063 5 6 1.8523 3.5186 -1.1508 6 1 2.1073 3.9541 -0.1960 7 6 1.5734 4.3333 -2.2277 8 7 1.6182 5.6407 -2.0922 9 14 1.1320 3.5801 -3.8791 10 1 -0.3386 3.3897 -3.9591 11 1 1.5740 4.4855 -4.9701 12 1 1.8096 2.2663 -4.0210 13 6 3.4367 1.4423 0.3832 14 6 3.5868 1.0090 1.8187 15 8 2.6095 0.6847 2.4596 16 7 4.8069 0.9827 2.3906 17 6 4.9527 0.5620 3.7863 18 6 4.6303 1.7571 4.7036 19 6 5.1555 1.5670 6.1394 20 6 4.9369 0.1693 6.6522 21 6 6.2116 -0.6564 6.3827 22 6 6.2890 -1.1242 5.0067 23 6 6.3477 0.0372 3.9933 24 1 -0.3633 -1.0276 -0.0142 25 1 -0.3633 0.5015 0.8969 26 1 -0.3633 0.5260 -0.8829 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.5787 1.7007 -2.0004 30 1 0.8255 1.7284 -1.6940 31 1 1.4217 6.2139 -2.8496 32 1 3.8021 2.4632 0.2717 33 1 4.0141 0.7775 -0.2592 34 1 5.5883 1.2431 1.8783 35 1 4.2412 -0.2390 3.9874 36 1 5.0796 2.6558 4.2810 37 1 3.5490 1.8896 4.7411 38 1 4.6433 2.2684 6.7981 39 1 6.2232 1.7859 6.1563 40 1 4.0914 -0.2829 6.1337 41 1 4.7396 0.1990 7.7237 42 1 7.0839 -0.0383 6.5950 43 1 6.2205 -1.5193 7.0485 44 1 7.1825 -1.7380 4.8923 45 1 5.4128 -1.7360 4.7921 46 1 6.9837 0.8318 4.3835 47 1 6.7507 -0.3228 3.0468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053341489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:39 Heat of formation + Delta-G solvation = -47.752371 kcal Electronic energy + Delta-G solvation = -23175.019944 eV Core-core repulsion = 19971.115131 eV Total energy + Delta-G solvation = -3203.904813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02020 -38.50623 -36.41066 -34.42227 -32.51621 -32.48363 -31.05528 -30.07381 -28.28433 -25.55302 -25.07003 -23.80194 -22.28301 -21.04242 -20.42431 -19.53275 -19.42343 -16.86451 -16.69768 -16.49100 -15.55960 -14.96663 -14.82310 -14.56338 -14.40984 -14.03491 -13.82849 -13.61710 -13.41974 -13.21684 -12.87737 -12.48772 -12.35997 -12.14488 -11.88492 -11.68468 -11.50856 -11.27943 -11.11363 -10.94589 -10.90622 -10.78333 -10.57301 -10.54675 -10.45006 -10.36654 -10.15771 -9.88906 -9.30826 -9.12649 -8.78048 -8.54661 -7.31550 -6.03867 -4.00705 3.09218 3.28664 3.35612 3.38000 3.39020 4.39033 4.42735 4.50451 4.74737 4.83903 4.92513 4.98280 5.07063 5.14277 5.25016 5.28652 5.32740 5.38442 5.58356 5.67556 5.73438 5.75113 5.81715 5.85631 5.89488 5.96573 6.00802 6.04487 6.08607 6.10726 6.15536 6.17100 6.29103 6.35632 6.36331 6.58976 6.74817 6.83596 6.86688 6.91686 7.63052 7.72326 7.95365 8.05545 8.65135 8.69795 9.05962 9.58037 11.09401 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.003613 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.476063 B = 7748.955564 C = 8162.640822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 N -0.509 5.509 4 C 0.161 3.839 5 C -0.507 4.507 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.044 3.956 14 C 0.515 3.485 15 O -0.522 6.522 16 N -0.740 5.740 17 C 0.151 3.849 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.126 4.126 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.014 0.986 28 H 0.075 0.925 29 H -0.012 1.012 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.397 0.603 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.345 -13.237 13.278 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 N -0.233 5.233 4 C 0.035 3.965 5 C -0.545 4.545 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.087 4.087 14 C 0.302 3.698 15 O -0.396 6.396 16 N -0.394 5.394 17 C 0.046 3.954 18 C -0.169 4.169 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.164 4.164 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.032 0.968 28 H 0.093 0.907 29 H 0.006 0.994 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.231 0.769 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.300 -13.046 13.972 21.714 hybrid contribution 0.584 -0.434 -1.848 1.986 sum 10.884 -13.479 12.124 21.146 Atomic orbital electron populations 1.21685 0.95423 0.99848 1.02739 1.22126 0.96401 0.90097 0.99348 1.61655 1.13898 1.15365 1.32421 1.20256 0.95607 0.95981 0.84614 1.21047 1.46728 0.88219 0.98534 0.90218 1.24897 0.95176 0.94701 0.98532 1.69892 1.49832 1.02885 1.31326 0.86891 0.79301 0.79413 0.84314 1.20115 1.21225 1.19340 1.21893 0.92386 1.03349 0.91077 1.21003 0.82475 0.76522 0.89815 1.90635 1.37667 1.46647 1.64695 1.46346 1.09497 1.70504 1.13007 1.20721 0.96984 0.96797 0.80884 1.22321 1.02285 0.98073 0.94174 1.21289 1.01066 0.96975 0.95845 1.21391 0.98070 0.95803 1.00672 1.20509 0.98226 0.99969 0.96856 1.20420 1.02253 0.97621 0.94995 1.21663 0.96395 0.98537 0.99771 0.93674 0.91859 0.92756 0.96777 0.90714 0.99430 0.95125 0.92694 0.86860 0.93473 0.76921 0.90020 0.91853 0.91316 0.92221 0.92215 0.91318 0.92021 0.92163 0.92404 0.92077 0.91905 0.90990 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.99 37.16 0.37 -2.17 16 2 C 0.05 0.93 5.23 -3.83 -0.02 0.91 16 3 N -0.51 -11.15 4.12 -237.52 -0.98 -12.13 16 4 C 0.16 3.94 3.65 -4.97 -0.02 3.92 16 5 C -0.51 -14.43 9.17 -34.44 -0.32 -14.74 16 6 H 0.08 2.49 7.89 -52.49 -0.41 2.07 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 9 Si 0.87 21.46 27.37 -169.99 -4.65 16.80 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.34 6.69 56.52 0.38 -5.96 16 13 C 0.04 0.82 5.27 -4.98 -0.03 0.80 16 14 C 0.52 8.83 7.30 -10.99 -0.08 8.75 16 15 O -0.52 -10.65 14.15 5.55 0.08 -10.57 16 16 N -0.74 -9.45 4.95 -54.49 -0.27 -9.72 16 17 C 0.15 1.72 1.94 -68.64 -0.13 1.59 16 18 C -0.13 -1.53 5.37 -25.62 -0.14 -1.67 16 19 C -0.11 -1.06 5.31 -27.44 -0.15 -1.20 16 20 C -0.12 -1.05 5.61 -27.34 -0.15 -1.20 16 21 C -0.12 -0.87 5.26 -29.60 -0.16 -1.03 16 22 C -0.12 -0.89 5.26 -29.60 -0.16 -1.05 16 23 C -0.13 -1.06 5.17 -27.34 -0.14 -1.21 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.05 1.03 6.53 -51.93 -0.34 0.69 16 27 H 0.01 0.26 8.05 -51.93 -0.42 -0.16 16 28 H 0.07 1.42 5.81 -51.93 -0.30 1.12 16 29 H -0.01 -0.29 7.40 -51.93 -0.38 -0.67 16 30 H 0.03 0.76 5.41 -51.93 -0.28 0.48 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.11 2.22 7.31 -51.93 -0.38 1.84 16 33 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.40 4.05 8.48 -40.82 -0.35 3.70 16 35 H 0.08 1.09 6.08 -51.92 -0.32 0.77 16 36 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.50 6.63 -51.93 -0.34 0.15 16 40 H 0.07 0.68 6.98 -51.93 -0.36 0.32 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.42 7.47 -51.93 -0.39 0.03 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 46 H 0.07 0.57 6.98 -51.93 -0.36 0.20 16 47 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -32.43 353.36 -9.33 -41.76 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.39 Total: 1.72 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -1.21 Total: -6.41 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.47 Total: -48.63 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.65 Total: 16.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.43 -9.33 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053341489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.993 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds