Wall clock time and date at job start Tue Mar 31 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47049 * 2 1 4 4 C 1.46902 * 111.00181 * 287.72494 * 3 2 1 5 5 C 1.50700 * 109.46964 * 160.36811 * 4 3 2 6 6 H 1.07999 * 120.00373 * 4.91586 * 5 4 3 7 7 C 1.37884 * 119.99693 * 184.90226 * 5 4 3 8 8 N 1.31514 * 119.99955 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00101 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47125 * 89.99395 * 9 7 5 11 11 H 1.48500 * 109.46819 * 209.99521 * 9 7 5 12 12 H 1.48499 * 109.47140 * 329.99645 * 9 7 5 13 13 C 1.46906 * 110.99816 * 163.77421 * 3 2 1 14 14 C 1.50693 * 109.47149 * 293.95364 * 13 3 2 15 15 O 1.21286 * 120.00157 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99984 * 180.02562 * 14 13 3 17 17 C 1.46498 * 119.99920 * 179.97438 * 16 14 13 18 18 C 1.54066 * 108.88277 * 277.97718 * 17 16 14 19 19 C 1.54058 * 112.81944 * 197.50680 * 18 17 16 20 20 C 1.50476 * 112.50024 * 318.28075 * 19 18 17 21 21 C 1.54245 * 108.51786 * 94.15479 * 20 19 18 22 22 C 1.45543 * 112.40296 * 280.01056 * 21 20 19 23 23 C 1.50472 * 108.87716 * 154.99865 * 17 16 14 24 24 H 1.09005 * 109.47058 * 179.20605 * 1 2 3 25 25 H 1.08991 * 109.47038 * 299.21320 * 1 2 3 26 26 H 1.09001 * 109.47010 * 59.21623 * 1 2 3 27 27 H 1.09003 * 109.47358 * 239.99829 * 2 1 3 28 28 H 1.09002 * 109.47052 * 119.99910 * 2 1 3 29 29 H 1.09000 * 109.47377 * 280.37066 * 4 3 2 30 30 H 1.09002 * 109.47053 * 40.37411 * 4 3 2 31 31 H 0.96997 * 120.00705 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46814 * 173.95340 * 13 3 2 33 33 H 1.09002 * 109.47355 * 53.95387 * 13 3 2 34 34 H 0.96997 * 119.99756 * 0.02562 * 16 14 13 35 35 H 1.09008 * 108.77079 * 36.49144 * 17 16 14 36 36 H 1.08997 * 108.81252 * 318.37277 * 18 17 16 37 37 H 1.09006 * 108.81022 * 76.75376 * 18 17 16 38 38 H 1.09005 * 108.87769 * 197.50376 * 19 18 17 39 39 H 1.08998 * 108.87835 * 79.06521 * 19 18 17 40 40 H 1.08998 * 109.62668 * 334.44519 * 20 19 18 41 41 H 1.09000 * 109.63134 * 213.86254 * 20 19 18 42 42 H 1.08997 * 108.89541 * 40.76362 * 21 20 19 43 43 H 1.08999 * 108.89207 * 159.35694 * 21 20 19 44 44 H 1.09001 * 108.89643 * 182.68957 * 22 21 20 45 45 H 1.09001 * 108.89666 * 301.18534 * 22 21 20 46 46 H 1.09001 * 109.62588 * 95.21504 * 23 17 16 47 47 H 1.08998 * 109.78603 * 334.73637 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8015 2.0205 -1.3063 5 6 1.8523 3.5186 -1.1508 6 1 2.1073 3.9541 -0.1960 7 6 1.5734 4.3333 -2.2277 8 7 1.6182 5.6407 -2.0922 9 14 1.1320 3.5801 -3.8791 10 1 -0.3386 3.3897 -3.9591 11 1 1.5740 4.4855 -4.9701 12 1 1.8096 2.2663 -4.0210 13 6 3.4367 1.4423 0.3832 14 6 3.5868 1.0090 1.8187 15 8 2.6095 0.6847 2.4596 16 7 4.8069 0.9827 2.3906 17 6 4.9527 0.5620 3.7863 18 6 4.6303 1.7571 4.7036 19 6 5.1555 1.5670 6.1394 20 6 4.9369 0.1693 6.6522 21 6 6.2116 -0.6564 6.3827 22 6 6.2890 -1.1242 5.0067 23 6 6.3477 0.0372 3.9933 24 1 -0.3633 -1.0276 -0.0142 25 1 -0.3633 0.5015 0.8969 26 1 -0.3633 0.5260 -0.8829 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.5787 1.7007 -2.0004 30 1 0.8255 1.7284 -1.6940 31 1 1.4217 6.2139 -2.8496 32 1 3.8021 2.4632 0.2717 33 1 4.0141 0.7775 -0.2592 34 1 5.5883 1.2431 1.8783 35 1 4.2412 -0.2390 3.9874 36 1 5.0796 2.6558 4.2810 37 1 3.5490 1.8896 4.7411 38 1 4.6433 2.2684 6.7981 39 1 6.2232 1.7859 6.1563 40 1 4.0914 -0.2829 6.1337 41 1 4.7396 0.1990 7.7237 42 1 7.0839 -0.0383 6.5950 43 1 6.2205 -1.5193 7.0485 44 1 7.1825 -1.7380 4.8923 45 1 5.4128 -1.7360 4.7921 46 1 6.9837 0.8318 4.3835 47 1 6.7507 -0.3228 3.0468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053341489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:39 Heat of formation + Delta-G solvation = -69.746112 kcal Electronic energy + Delta-G solvation = -23175.973665 eV Core-core repulsion = 19971.115131 eV Total energy + Delta-G solvation = -3204.858533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19889 -39.58717 -37.96484 -35.55906 -34.67295 -33.24254 -32.31411 -31.46081 -30.05895 -27.09582 -25.86447 -24.81378 -24.09646 -22.13197 -21.63648 -20.88864 -20.37164 -18.99081 -18.06123 -17.55633 -16.59027 -16.57608 -16.19918 -15.96141 -15.51499 -15.28263 -15.07566 -14.85508 -14.67862 -14.47713 -14.29028 -13.92884 -13.57743 -13.44161 -13.12340 -12.95976 -12.91272 -12.61282 -12.52870 -12.37015 -12.19944 -12.01634 -11.87901 -11.65621 -11.55401 -11.47781 -11.34295 -11.23756 -11.15907 -10.76727 -10.57581 -9.96738 -8.97634 -8.26447 -6.29620 1.36771 1.37634 1.48502 1.70417 2.18020 2.35931 3.06195 3.26886 3.62867 3.76828 3.94059 4.07292 4.16713 4.18779 4.23789 4.28157 4.30505 4.42748 4.48465 4.50548 4.54725 4.56684 4.70093 4.83088 4.86703 4.90623 4.92055 5.01552 5.04569 5.11321 5.19008 5.21744 5.29606 5.31742 5.34202 5.34870 5.42219 5.49851 5.57044 5.58698 5.64541 6.01022 6.28146 6.65024 6.67896 6.75969 7.33497 7.36685 8.90460 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.003613 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.476063 B = 7748.955564 C = 8162.640822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.051 3.949 3 N -0.537 5.537 4 C 0.173 3.827 5 C -0.514 4.514 6 H 0.032 0.968 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.247 1.247 13 C 0.044 3.956 14 C 0.517 3.483 15 O -0.560 6.560 16 N -0.722 5.722 17 C 0.153 3.847 18 C -0.127 4.127 19 C -0.108 4.108 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.119 4.119 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.032 0.968 28 H 0.076 0.924 29 H -0.003 1.003 30 H 0.033 0.967 31 H 0.267 0.733 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.412 0.588 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.049 0.951 46 H 0.085 0.915 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.015 -15.503 12.740 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 N -0.262 5.262 4 C 0.047 3.953 5 C -0.552 4.552 6 H 0.051 0.949 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.171 1.171 13 C -0.087 4.087 14 C 0.304 3.696 15 O -0.438 6.438 16 N -0.375 5.375 17 C 0.049 3.951 18 C -0.166 4.166 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.157 4.157 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.015 0.985 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.249 0.751 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.103 0.897 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.024 -15.329 13.455 23.677 hybrid contribution 0.090 0.321 -1.556 1.591 sum 12.114 -15.009 11.899 22.663 Atomic orbital electron populations 1.21676 0.94901 1.01612 1.01212 1.22157 0.96867 0.88530 1.00136 1.61509 1.16218 1.17332 1.31106 1.19991 0.95845 0.93296 0.86182 1.21235 1.46420 0.90804 0.96756 0.94918 1.25836 0.94947 0.94995 1.03047 1.70052 1.51277 1.04697 1.32887 0.85723 0.79341 0.79332 0.78584 1.19408 1.20625 1.17066 1.21879 0.91136 1.03024 0.92649 1.20786 0.83262 0.76338 0.89236 1.90621 1.39171 1.48733 1.65272 1.46227 1.08635 1.68904 1.13752 1.20840 0.98723 0.95947 0.79542 1.22285 0.99898 0.98153 0.96270 1.21264 1.01962 0.97597 0.93775 1.21396 0.98277 0.95344 1.01000 1.20500 0.97659 1.00318 0.96834 1.20419 1.02559 0.97243 0.94893 1.21646 0.94034 0.99196 1.00832 0.90312 0.93838 0.93699 0.94986 0.90597 0.98508 0.94939 0.92445 0.88719 0.90612 0.75120 0.92040 0.92250 0.95100 0.92384 0.90317 0.93341 0.90997 0.90889 0.91391 0.90216 0.93180 0.89650 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.99 71.98 0.72 -4.11 16 2 C 0.05 1.88 5.23 86.30 0.45 2.33 16 3 N -0.54 -23.58 4.12 -905.36 -3.73 -27.30 16 4 C 0.17 8.39 3.65 85.56 0.31 8.71 16 5 C -0.51 -30.02 9.17 25.60 0.23 -29.79 16 6 H 0.03 2.16 7.89 -2.91 -0.02 2.13 16 7 C 0.01 0.52 5.47 84.66 0.46 0.99 16 8 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 9 Si 0.95 43.86 27.37 68.60 1.88 45.74 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.25 -10.52 6.69 99.48 0.67 -9.85 16 13 C 0.04 1.65 5.27 85.55 0.45 2.10 16 14 C 0.52 17.96 7.30 87.65 0.64 18.60 16 15 O -0.56 -23.58 14.15 -3.05 -0.04 -23.62 16 16 N -0.72 -18.13 4.95 -444.71 -2.20 -20.33 16 17 C 0.15 3.45 1.94 44.53 0.09 3.53 16 18 C -0.13 -3.06 5.37 31.31 0.17 -2.90 16 19 C -0.11 -1.92 5.31 30.14 0.16 -1.76 16 20 C -0.12 -1.98 5.61 30.20 0.17 -1.81 16 21 C -0.12 -1.42 5.26 28.74 0.15 -1.27 16 22 C -0.11 -1.49 5.26 28.74 0.15 -1.34 16 23 C -0.12 -1.74 5.17 30.20 0.16 -1.59 16 24 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.04 1.65 6.53 -2.39 -0.02 1.63 16 27 H 0.03 1.08 8.05 -2.39 -0.02 1.06 16 28 H 0.08 2.82 5.81 -2.39 -0.01 2.81 16 29 H 0.00 -0.13 7.40 -2.39 -0.02 -0.14 16 30 H 0.03 1.56 5.41 -2.39 -0.01 1.55 16 31 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.09 3.84 7.31 -2.39 -0.02 3.82 16 33 H 0.08 2.35 8.12 -2.39 -0.02 2.34 16 34 H 0.41 7.85 8.48 -92.71 -0.79 7.06 16 35 H 0.06 1.68 6.08 -2.38 -0.01 1.66 16 36 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 37 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.08 1.12 6.63 -2.39 -0.02 1.10 16 40 H 0.05 0.98 6.98 -2.39 -0.02 0.96 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 0.75 7.47 -2.39 -0.02 0.73 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 0.80 7.47 -2.39 -0.02 0.78 16 46 H 0.08 1.07 6.98 -2.39 -0.02 1.05 16 47 H 0.08 1.06 7.86 -2.39 -0.02 1.04 16 Total: -1.00 -72.82 353.36 0.63 -72.19 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.11 Total: 20.91 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 4.31 Total: -8.30 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -5.63 Total: -106.91 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.62 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Total: -72.82 0.63 -72.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053341489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.442 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds