Wall clock time and date at job start Tue Mar 31 2020 05:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47468 * 2 1 4 4 C 1.46501 * 119.99697 * 269.99901 * 3 2 1 5 5 C 1.50697 * 109.47327 * 269.99842 * 4 3 2 6 6 H 1.07997 * 120.00042 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00378 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99831 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00235 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47004 * 90.00100 * 9 7 5 11 11 H 1.48506 * 109.47229 * 209.99852 * 9 7 5 12 12 H 1.48500 * 109.47099 * 330.00017 * 9 7 5 13 13 C 1.34776 * 120.00436 * 89.99735 * 3 2 1 14 14 O 1.21277 * 119.99840 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99679 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.46832 * 179.97438 * 15 13 3 17 17 C 1.47801 * 110.99993 * 66.05005 * 16 15 13 18 18 C 1.45866 * 112.91196 * 153.87729 * 17 16 15 19 19 C 1.54500 * 111.59803 * 61.32153 * 18 17 16 20 20 C 1.50465 * 108.84674 * 282.79481 * 19 18 17 21 21 H 1.09000 * 108.77112 * 331.36274 * 20 19 18 22 22 C 1.52995 * 108.76863 * 213.07811 * 20 19 18 23 23 C 1.54287 * 113.03060 * 92.16400 * 20 19 18 24 24 C 1.44272 * 111.00240 * 304.05351 * 16 15 13 25 25 H 1.08997 * 109.47342 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47136 * 300.00333 * 1 2 3 27 27 H 1.09004 * 109.47190 * 59.99968 * 1 2 3 28 28 H 1.09000 * 109.47136 * 239.99667 * 2 1 3 29 29 H 1.09004 * 109.47190 * 120.00032 * 2 1 3 30 30 H 1.08999 * 109.47167 * 30.00068 * 4 3 2 31 31 H 1.09000 * 109.47174 * 149.99531 * 4 3 2 32 32 H 0.97001 * 119.99718 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46858 * 60.00276 * 15 13 3 34 34 H 1.08997 * 109.47287 * 300.00270 * 15 13 3 35 35 H 1.08995 * 108.79464 * 32.98842 * 17 16 15 36 36 H 1.09004 * 108.79107 * 274.76054 * 17 16 15 37 37 H 1.09000 * 109.05103 * 181.86745 * 18 17 16 38 38 H 1.08995 * 109.05110 * 300.84707 * 18 17 16 39 39 H 1.09003 * 109.57558 * 42.60518 * 19 18 17 40 40 H 1.08997 * 109.57538 * 162.98680 * 19 18 17 41 41 H 1.09002 * 109.47460 * 60.00034 * 22 20 19 42 42 H 1.09003 * 109.47159 * 180.02562 * 22 20 19 43 43 H 1.09000 * 109.47546 * 299.99384 * 22 20 19 44 44 H 1.08995 * 108.92116 * 79.02152 * 23 20 19 45 45 H 1.09002 * 108.91698 * 197.67716 * 23 20 19 46 46 H 1.08996 * 108.97631 * 98.66562 * 24 16 15 47 47 H 1.09004 * 108.97478 * 339.96177 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0962 7 6 4.1492 2.3893 -2.8780 8 7 3.3489 3.1246 -3.6187 9 14 5.9132 2.0951 -3.4176 10 1 5.9759 0.8739 -4.2602 11 1 6.3924 3.2622 -4.2010 12 1 6.7735 1.9155 -2.2206 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1598 1.1670 15 6 1.9923 1.3061 2.4723 16 7 2.3110 2.2060 3.5888 17 6 1.3788 3.3523 3.6278 18 6 1.2298 3.9177 4.9641 19 6 2.5721 4.4576 5.5061 20 6 3.4125 3.2973 5.9661 21 1 2.7523 2.4904 6.2842 22 6 4.2551 3.7436 7.1626 23 6 4.3543 2.7614 4.8678 24 6 3.6662 2.6912 3.4912 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0956 3.1409 -1.1385 32 1 3.6750 3.5150 -4.4447 33 1 2.6229 0.4188 2.5299 34 1 0.9445 1.0115 2.5302 35 1 0.4017 3.0224 3.2750 36 1 1.7482 4.1282 2.9573 37 1 0.5073 4.7330 4.9269 38 1 0.8599 3.1452 5.6381 39 1 3.0948 4.9965 4.7159 40 1 2.3842 5.1276 6.3451 41 1 3.5976 4.0667 7.9698 42 1 4.8694 2.9109 7.5051 43 1 4.8990 4.5712 6.8651 44 1 5.2223 3.4166 4.7960 45 1 4.6884 1.7617 5.1458 46 1 3.6549 3.6875 3.0492 47 1 4.2356 2.0243 2.8437 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063302204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:57 Heat of formation + Delta-G solvation = -43.559437 kcal Electronic energy + Delta-G solvation = -23850.162603 eV Core-core repulsion = 20646.439609 eV Total energy + Delta-G solvation = -3203.722994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04966 -38.22419 -35.56205 -34.61277 -32.82746 -32.53332 -30.11024 -29.48574 -27.53040 -26.26058 -24.84298 -23.17640 -22.93058 -22.30361 -20.48302 -19.30370 -18.18114 -16.59536 -16.31088 -15.96127 -15.63478 -15.06542 -14.74594 -14.47025 -14.22169 -14.11557 -13.44045 -13.25996 -12.98746 -12.85105 -12.73647 -12.36725 -12.34945 -12.02896 -11.97392 -11.67979 -11.35283 -11.23432 -11.08270 -10.90861 -10.73530 -10.67217 -10.55768 -10.47883 -10.32953 -10.19707 -10.12496 -10.02191 -9.64726 -9.45875 -8.44969 -7.80405 -7.66059 -6.05688 -4.10420 3.28375 3.34666 3.37025 3.42468 3.95483 4.13646 4.43596 4.80166 4.94889 5.03955 5.12707 5.24757 5.28973 5.31730 5.33832 5.45490 5.53971 5.57366 5.64014 5.65775 5.74133 5.76873 5.79281 5.91783 5.98085 6.01339 6.04619 6.12752 6.16428 6.21904 6.25342 6.37470 6.40916 6.46394 6.47565 6.58318 6.63061 7.02797 7.25064 7.36875 7.43567 7.55124 7.90850 8.22756 8.42430 8.88840 9.08116 9.54841 11.02343 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.004702 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.340586 B = 5953.794319 C = 6811.113134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.473 3.527 14 O -0.542 6.542 15 C 0.034 3.966 16 N -0.505 5.505 17 C 0.046 3.954 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.081 4.081 21 H 0.071 0.929 22 C -0.149 4.149 23 C -0.104 4.104 24 C 0.055 3.945 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.263 0.737 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -3.820 16.931 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.259 3.741 14 O -0.420 6.420 15 C -0.098 4.098 16 N -0.227 5.227 17 C -0.081 4.081 18 C -0.148 4.148 19 C -0.150 4.150 20 C -0.099 4.099 21 H 0.090 0.910 22 C -0.207 4.207 23 C -0.142 4.142 24 C -0.073 4.073 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.222 -3.377 17.191 18.022 hybrid contribution 1.046 0.148 -1.351 1.715 sum -3.176 -3.229 15.841 16.476 Atomic orbital electron populations 1.22211 0.96795 1.01427 1.02229 1.21414 0.93501 0.84258 1.02669 1.48381 1.63276 1.13186 1.07980 1.19232 0.96164 0.93555 0.78372 1.21418 0.96936 1.31798 1.06200 0.92598 1.24932 0.97813 0.94928 0.96408 1.69936 1.35668 1.33507 1.14299 0.86513 0.84723 0.77694 0.78593 1.20623 1.21085 1.19935 1.21587 0.78720 0.87568 0.86261 1.90641 1.46086 1.18173 1.87085 1.22504 1.03032 0.96770 0.87502 1.62040 1.03676 1.17545 1.39477 1.21063 0.96095 0.93455 0.97488 1.20569 0.97238 0.99707 0.97273 1.21428 0.95821 0.97415 1.00330 1.20797 0.96717 0.97764 0.94655 0.91010 1.21986 0.99876 1.00885 0.97924 1.22044 0.97323 1.00322 0.94556 1.21917 0.88775 1.01173 0.95481 0.92128 0.93114 0.92134 0.90036 0.91667 0.95241 0.94099 0.92746 0.88515 0.88700 0.92489 0.92143 0.92113 0.91845 0.91938 0.92382 0.93143 0.93150 0.93073 0.92484 0.92611 0.91857 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.36 2.46 -175.06 -0.43 -12.79 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.52 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.47 9.51 6.88 -10.98 -0.08 9.44 16 14 O -0.54 -12.97 11.96 5.56 0.07 -12.90 16 15 C 0.03 0.50 4.12 -4.98 -0.02 0.48 16 16 N -0.51 -7.49 4.45 -241.00 -1.07 -8.56 16 17 C 0.05 0.67 4.23 -6.70 -0.03 0.65 16 18 C -0.11 -1.31 5.53 -29.32 -0.16 -1.47 16 19 C -0.11 -1.31 5.10 -27.21 -0.14 -1.45 16 20 C -0.08 -0.92 2.32 -91.21 -0.21 -1.14 16 21 H 0.07 0.86 7.38 -51.93 -0.38 0.47 16 22 C -0.15 -1.45 8.79 37.15 0.33 -1.13 16 23 C -0.10 -1.35 5.51 -25.50 -0.14 -1.49 16 24 C 0.06 0.88 3.75 -4.67 -0.02 0.86 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 30 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.10 1.33 7.39 -51.93 -0.38 0.95 16 34 H 0.09 1.23 6.94 -51.93 -0.36 0.87 16 35 H 0.06 0.80 7.64 -51.93 -0.40 0.41 16 36 H 0.06 1.07 5.91 -51.93 -0.31 0.76 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.72 7.58 -51.93 -0.39 0.32 16 39 H 0.06 0.83 7.15 -51.93 -0.37 0.46 16 40 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 41 H 0.05 0.44 8.07 -51.93 -0.42 0.03 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.18 5.46 -51.93 -0.28 0.90 16 47 H 0.06 1.02 7.29 -51.93 -0.38 0.64 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -31.41 354.10 -9.45 -40.86 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -8.51 Total: -0.32 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.56 Total: -2.60 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.77 Total: -47.31 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.41 -9.45 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063302204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.701 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds