Wall clock time and date at job start Tue Mar 31 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47468 * 2 1 4 4 C 1.46501 * 119.99697 * 269.99901 * 3 2 1 5 5 C 1.50697 * 109.47327 * 269.99842 * 4 3 2 6 6 H 1.07997 * 120.00042 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00378 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99831 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00235 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47004 * 90.00100 * 9 7 5 11 11 H 1.48506 * 109.47229 * 209.99852 * 9 7 5 12 12 H 1.48500 * 109.47099 * 330.00017 * 9 7 5 13 13 C 1.34776 * 120.00436 * 89.99735 * 3 2 1 14 14 O 1.21277 * 119.99840 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99679 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.46832 * 179.97438 * 15 13 3 17 17 C 1.47801 * 110.99993 * 66.05005 * 16 15 13 18 18 C 1.45866 * 112.91196 * 153.87729 * 17 16 15 19 19 C 1.54500 * 111.59803 * 61.32153 * 18 17 16 20 20 C 1.50465 * 108.84674 * 282.79481 * 19 18 17 21 21 H 1.09000 * 108.77112 * 331.36274 * 20 19 18 22 22 C 1.52995 * 108.76863 * 213.07811 * 20 19 18 23 23 C 1.54287 * 113.03060 * 92.16400 * 20 19 18 24 24 C 1.44272 * 111.00240 * 304.05351 * 16 15 13 25 25 H 1.08997 * 109.47342 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47136 * 300.00333 * 1 2 3 27 27 H 1.09004 * 109.47190 * 59.99968 * 1 2 3 28 28 H 1.09000 * 109.47136 * 239.99667 * 2 1 3 29 29 H 1.09004 * 109.47190 * 120.00032 * 2 1 3 30 30 H 1.08999 * 109.47167 * 30.00068 * 4 3 2 31 31 H 1.09000 * 109.47174 * 149.99531 * 4 3 2 32 32 H 0.97001 * 119.99718 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46858 * 60.00276 * 15 13 3 34 34 H 1.08997 * 109.47287 * 300.00270 * 15 13 3 35 35 H 1.08995 * 108.79464 * 32.98842 * 17 16 15 36 36 H 1.09004 * 108.79107 * 274.76054 * 17 16 15 37 37 H 1.09000 * 109.05103 * 181.86745 * 18 17 16 38 38 H 1.08995 * 109.05110 * 300.84707 * 18 17 16 39 39 H 1.09003 * 109.57558 * 42.60518 * 19 18 17 40 40 H 1.08997 * 109.57538 * 162.98680 * 19 18 17 41 41 H 1.09002 * 109.47460 * 60.00034 * 22 20 19 42 42 H 1.09003 * 109.47159 * 180.02562 * 22 20 19 43 43 H 1.09000 * 109.47546 * 299.99384 * 22 20 19 44 44 H 1.08995 * 108.92116 * 79.02152 * 23 20 19 45 45 H 1.09002 * 108.91698 * 197.67716 * 23 20 19 46 46 H 1.08996 * 108.97631 * 98.66562 * 24 16 15 47 47 H 1.09004 * 108.97478 * 339.96177 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2301 -1.0962 7 6 4.1492 2.3893 -2.8780 8 7 3.3489 3.1246 -3.6187 9 14 5.9132 2.0951 -3.4176 10 1 5.9759 0.8739 -4.2602 11 1 6.3924 3.2622 -4.2010 12 1 6.7735 1.9155 -2.2206 13 6 2.2430 2.0166 1.1671 14 8 2.6478 3.1598 1.1670 15 6 1.9923 1.3061 2.4723 16 7 2.3110 2.2060 3.5888 17 6 1.3788 3.3523 3.6278 18 6 1.2298 3.9177 4.9641 19 6 2.5721 4.4576 5.5061 20 6 3.4125 3.2973 5.9661 21 1 2.7523 2.4904 6.2842 22 6 4.2551 3.7436 7.1626 23 6 4.3543 2.7614 4.8678 24 6 3.6662 2.6912 3.4912 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0956 3.1409 -1.1385 32 1 3.6750 3.5150 -4.4447 33 1 2.6229 0.4188 2.5299 34 1 0.9445 1.0115 2.5302 35 1 0.4017 3.0224 3.2750 36 1 1.7482 4.1282 2.9573 37 1 0.5073 4.7330 4.9269 38 1 0.8599 3.1452 5.6381 39 1 3.0948 4.9965 4.7159 40 1 2.3842 5.1276 6.3451 41 1 3.5976 4.0667 7.9698 42 1 4.8694 2.9109 7.5051 43 1 4.8990 4.5712 6.8651 44 1 5.2223 3.4166 4.7960 45 1 4.6884 1.7617 5.1458 46 1 3.6549 3.6875 3.0492 47 1 4.2356 2.0243 2.8437 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063302204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:56 Heat of formation + Delta-G solvation = -63.372993 kcal Electronic energy + Delta-G solvation = -23851.021783 eV Core-core repulsion = 20646.439609 eV Total energy + Delta-G solvation = -3204.582174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45844 -39.54590 -37.06431 -35.87671 -34.92096 -33.63369 -31.65444 -30.72864 -29.11742 -27.58097 -26.15912 -24.77926 -24.10579 -23.77589 -21.66146 -20.43940 -19.65481 -18.65691 -17.95160 -17.40355 -16.81413 -16.66609 -16.12304 -15.76812 -15.73528 -15.42374 -14.70900 -14.52328 -14.48679 -14.05887 -13.93705 -13.70247 -13.56097 -13.33070 -13.28189 -13.14649 -13.00455 -12.71115 -12.53032 -12.37722 -12.34745 -12.12210 -11.85584 -11.77710 -11.74631 -11.57434 -11.29110 -11.15041 -11.10577 -11.01971 -10.67641 -9.43036 -9.20270 -8.25633 -6.40824 1.32572 1.35521 1.45702 1.81959 2.29285 2.45195 2.91351 3.03575 3.73581 3.79808 3.92123 4.09771 4.14467 4.16603 4.23667 4.34904 4.43617 4.48118 4.52402 4.61380 4.64168 4.77227 4.84812 4.90094 4.92943 4.96461 4.98269 5.03533 5.04592 5.08340 5.14377 5.18977 5.23134 5.29665 5.38242 5.40759 5.50575 5.52974 5.55848 5.67250 5.83981 5.99001 6.04061 6.09782 6.67289 6.81104 7.25662 7.48709 8.81217 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.004702 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.340586 B = 5953.794319 C = 6811.113134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.463 3.537 14 O -0.590 6.590 15 C 0.044 3.956 16 N -0.490 5.490 17 C 0.051 3.949 18 C -0.107 4.107 19 C -0.112 4.112 20 C -0.077 4.077 21 H 0.076 0.924 22 C -0.145 4.145 23 C -0.099 4.099 24 C 0.063 3.937 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.017 0.983 31 H -0.008 1.008 32 H 0.267 0.733 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.026 0.974 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -5.922 19.279 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.335 5.335 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.251 3.749 14 O -0.471 6.471 15 C -0.088 4.088 16 N -0.212 5.212 17 C -0.076 4.076 18 C -0.145 4.145 19 C -0.149 4.149 20 C -0.095 4.095 21 H 0.094 0.906 22 C -0.202 4.202 23 C -0.138 4.138 24 C -0.066 4.066 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.035 0.965 31 H 0.010 0.990 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.287 -5.522 19.560 20.772 hybrid contribution 1.021 0.829 -2.108 2.485 sum -3.266 -4.693 17.452 18.365 Atomic orbital electron populations 1.22141 0.94526 1.03546 1.01553 1.21751 0.95344 0.81351 1.03900 1.48432 1.63592 1.15085 1.06365 1.18623 0.95095 0.91282 0.80748 1.21688 0.97898 1.31895 1.06471 0.93070 1.25859 1.02378 0.94453 0.96434 1.70059 1.37783 1.34282 1.14769 0.85429 0.78985 0.78278 0.78202 1.18646 1.20626 1.19882 1.22662 0.77397 0.87210 0.87597 1.90637 1.48042 1.20575 1.87882 1.22670 1.05403 0.96668 0.84029 1.62222 1.03093 1.17452 1.38440 1.21071 0.95836 0.92321 0.98410 1.20555 0.97722 1.00443 0.95768 1.21437 0.95567 0.97764 1.00172 1.20766 0.96600 0.97603 0.94571 0.90577 1.21939 0.99882 1.01049 0.97363 1.22010 0.97356 1.01171 0.93223 1.21802 0.89460 0.98461 0.96842 0.88513 0.92013 0.94612 0.91254 0.87951 0.96464 0.99015 0.92435 0.86226 0.85506 0.91835 0.96232 0.91020 0.90081 0.94499 0.90410 0.91724 0.92410 0.93410 0.92700 0.91396 0.95596 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.24 71.98 0.74 -3.13 16 2 C 0.10 2.97 5.93 86.38 0.51 3.48 16 3 N -0.60 -25.55 2.46 -826.17 -2.03 -27.58 16 4 C 0.26 14.53 5.16 85.63 0.44 14.98 16 5 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 9 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.46 19.04 6.88 87.66 0.60 19.64 16 14 O -0.59 -30.07 11.96 -3.02 -0.04 -30.10 16 15 C 0.04 1.24 4.12 85.56 0.35 1.59 16 16 N -0.49 -14.05 4.45 -916.39 -4.08 -18.13 16 17 C 0.05 1.47 4.23 83.94 0.36 1.83 16 18 C -0.11 -2.38 5.53 28.92 0.16 -2.22 16 19 C -0.11 -2.49 5.10 30.28 0.15 -2.33 16 20 C -0.08 -1.60 2.32 -11.18 -0.03 -1.63 16 21 H 0.08 1.56 7.38 -2.39 -0.02 1.54 16 22 C -0.15 -2.45 8.79 71.98 0.63 -1.81 16 23 C -0.10 -2.49 5.51 31.39 0.17 -2.31 16 24 C 0.06 2.07 3.75 87.16 0.33 2.39 16 25 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.36 7.22 -2.39 -0.02 1.35 16 27 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 29 H 0.10 2.32 6.44 -2.38 -0.02 2.31 16 30 H 0.02 0.97 8.07 -2.39 -0.02 0.96 16 31 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.12 2.91 7.39 -2.38 -0.02 2.89 16 34 H 0.13 2.83 6.94 -2.39 -0.02 2.82 16 35 H 0.06 1.72 7.64 -2.39 -0.02 1.71 16 36 H 0.02 0.73 5.91 -2.39 -0.01 0.72 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.57 7.58 -2.39 -0.02 1.55 16 39 H 0.04 1.01 7.15 -2.39 -0.02 0.99 16 40 H 0.08 1.43 7.68 -2.39 -0.02 1.41 16 41 H 0.06 0.92 8.07 -2.39 -0.02 0.91 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 1.38 7.98 -2.39 -0.02 1.36 16 45 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.03 1.04 5.46 -2.39 -0.01 1.02 16 47 H 0.04 1.31 7.29 -2.38 -0.02 1.29 16 Total: -1.00 -73.22 354.10 2.21 -71.01 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.92 Total: 14.17 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.13 Total: -0.12 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -5.82 Total: -102.63 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.04 Total: -30.10 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.22 2.21 -71.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063302204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.639 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds