Wall clock time and date at job start Tue Mar 31 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46505 * 119.99695 * 90.00194 * 3 2 1 5 5 C 1.50695 * 109.47236 * 90.00275 * 4 3 2 6 6 H 1.08003 * 119.99805 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00223 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99751 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00189 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47040 * 60.00779 * 9 7 5 11 11 H 1.48506 * 109.47142 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47331 * 300.00580 * 9 7 5 13 13 C 1.34774 * 120.00334 * 270.00094 * 3 2 1 14 14 O 1.21290 * 120.00196 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00044 * 0.02562 * 13 3 2 16 16 N 1.46907 * 109.47235 * 179.97438 * 15 13 3 17 17 C 1.47446 * 111.00070 * 69.86972 * 16 15 13 18 18 C 1.54317 * 107.23169 * 123.25601 * 17 16 15 19 19 C 1.55137 * 103.01814 * 22.28630 * 18 17 16 20 20 C 1.47847 * 110.99937 * 190.71298 * 16 15 13 21 21 H 1.09002 * 110.37338 * 332.46376 * 20 16 15 22 22 C 1.52996 * 110.37371 * 94.80489 * 20 16 15 23 23 C 1.52999 * 109.47250 * 179.97438 * 22 20 16 24 24 C 1.53006 * 109.46986 * 300.00099 * 22 20 16 25 25 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 30 30 H 1.09008 * 109.47100 * 210.00146 * 4 3 2 31 31 H 1.09000 * 109.47177 * 329.99923 * 4 3 2 32 32 H 0.97004 * 119.99902 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47136 * 299.99521 * 15 13 3 34 34 H 1.08994 * 109.47698 * 59.99679 * 15 13 3 35 35 H 1.08995 * 109.89111 * 242.66472 * 17 16 15 36 36 H 1.08999 * 109.88597 * 3.69175 * 17 16 15 37 37 H 1.09000 * 110.70101 * 140.66526 * 18 17 16 38 38 H 1.08994 * 110.70828 * 263.72384 * 18 17 16 39 39 H 1.08992 * 110.99518 * 82.43954 * 19 18 17 40 40 H 1.09005 * 110.98840 * 206.21639 * 19 18 17 41 41 H 1.08997 * 109.46883 * 59.99654 * 22 20 16 42 42 H 1.09005 * 109.46525 * 60.00326 * 23 22 20 43 43 H 1.08995 * 109.47275 * 180.02562 * 23 22 20 44 44 H 1.09000 * 109.47298 * 300.00207 * 23 22 20 45 45 H 1.09004 * 109.46784 * 180.02562 * 24 22 20 46 46 H 1.08997 * 109.46946 * 299.99517 * 24 22 20 47 47 H 1.08995 * 109.47059 * 60.00476 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1494 2.3904 2.8775 8 7 3.3494 3.1264 3.6177 9 14 5.9134 2.0963 3.4170 10 1 6.8413 2.6188 2.3820 11 1 6.1610 2.7964 4.7031 12 1 6.1403 0.6396 3.5952 13 6 2.2429 2.0166 -1.1671 14 8 2.6468 3.1603 -1.1671 15 6 1.9912 1.3065 -2.4722 16 7 2.3090 2.2067 -3.5888 17 6 3.7620 2.4392 -3.6832 18 6 4.2003 2.0223 -5.1028 19 6 2.8825 2.1131 -5.9163 20 6 1.8377 1.6453 -4.8727 21 1 1.8113 0.5566 -4.8239 22 6 0.4538 2.1978 -5.2198 23 6 -0.0132 1.6046 -6.5505 24 6 -0.5372 1.8205 -4.1168 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.0955 3.1410 1.1385 31 1 1.5817 1.6876 2.0285 32 1 3.6755 3.5168 4.4436 33 1 2.6212 0.4188 -2.5303 34 1 0.9432 1.0127 -2.5299 35 1 3.9798 3.4950 -3.5228 36 1 4.2830 1.8361 -2.9396 37 1 4.9442 2.7156 -5.4955 38 1 4.5872 1.0034 -5.1031 39 1 2.6878 3.1382 -6.2312 40 1 2.9062 1.4411 -6.7743 41 1 0.5069 3.2832 -5.3048 42 1 -0.0661 0.5192 -6.4657 43 1 -0.9988 1.9986 -6.7980 44 1 0.6930 1.8738 -7.3361 45 1 -1.5232 2.2138 -4.3643 46 1 -0.5903 0.7352 -4.0317 47 1 -0.2044 2.2435 -3.1690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063618999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:52 Heat of formation + Delta-G solvation = -41.259753 kcal Electronic energy + Delta-G solvation = -23825.998813 eV Core-core repulsion = 20622.375540 eV Total energy + Delta-G solvation = -3203.623272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.87650 -38.32194 -35.23253 -34.61999 -32.87074 -32.06440 -30.02834 -28.00661 -27.75815 -27.06999 -25.76109 -23.00545 -22.59492 -21.63307 -20.93999 -19.63143 -18.11870 -16.53256 -16.44651 -16.07927 -15.68675 -15.11513 -14.57829 -14.37013 -14.10498 -13.62933 -13.35810 -13.30541 -13.27224 -12.83587 -12.65195 -12.39507 -12.20264 -12.07669 -11.95459 -11.83840 -11.56053 -11.29287 -11.11357 -11.01525 -10.89445 -10.87074 -10.73400 -10.63582 -10.49337 -10.46136 -10.39176 -10.08469 -9.60302 -8.78047 -8.39760 -8.03233 -7.57080 -6.00559 -4.05162 3.33188 3.37707 3.40086 3.56189 3.74307 4.24892 4.47567 4.59419 4.67501 4.95722 5.02802 5.08419 5.20970 5.22337 5.31816 5.33729 5.38599 5.45466 5.50431 5.57199 5.62303 5.65910 5.69965 5.77608 5.82680 5.83884 5.89723 5.90334 5.98450 6.06291 6.13110 6.14086 6.26572 6.36632 6.37742 6.45204 6.51897 7.05226 7.18969 7.26708 7.51653 7.63513 7.96729 8.28679 8.52932 8.95295 9.23472 9.59975 11.07366 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.004619 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.903740 B = 6060.738110 C = 6876.817180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.506 3.494 14 O -0.523 6.523 15 C 0.025 3.975 16 N -0.504 5.504 17 C 0.054 3.946 18 C -0.145 4.145 19 C -0.121 4.121 20 C 0.076 3.924 21 H 0.051 0.949 22 C -0.079 4.079 23 C -0.146 4.146 24 C -0.151 4.151 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 -7.391 -18.195 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.291 3.709 14 O -0.398 6.398 15 C -0.106 4.106 16 N -0.228 5.228 17 C -0.074 4.074 18 C -0.184 4.184 19 C -0.159 4.159 20 C -0.032 4.032 21 H 0.069 0.931 22 C -0.098 4.098 23 C -0.204 4.204 24 C -0.208 4.208 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.937 -6.187 -17.875 19.825 hybrid contribution 1.382 -1.092 0.399 1.806 sum -4.555 -7.279 -17.476 19.471 Atomic orbital electron populations 1.22229 0.96871 1.01288 1.02364 1.21379 0.93477 0.84478 1.02392 1.48254 1.64415 1.13114 1.07726 1.19217 0.96040 0.93646 0.78160 1.21399 0.97005 1.31775 1.06197 0.92705 1.24924 0.97733 0.94973 0.96425 1.69926 1.35666 1.33459 1.14350 0.86585 0.84967 0.78184 0.77825 1.20233 1.21177 1.20322 1.20150 0.78913 0.87139 0.84671 1.90665 1.44607 1.17639 1.86884 1.22473 1.02667 0.94192 0.91277 1.63132 1.14321 1.43915 1.01447 1.22741 0.86914 1.02775 0.94961 1.22843 0.97750 1.01390 0.96378 1.22712 0.94125 1.01948 0.97123 1.22633 0.94794 0.96786 0.88998 0.93052 1.21028 0.93409 1.00971 0.94425 1.21855 1.00926 1.00662 0.96955 1.21951 0.98484 1.00569 0.99810 0.91981 0.92288 0.93093 0.90064 0.92139 0.93944 0.95185 0.92715 0.92908 0.88080 0.89845 0.92828 0.90872 0.91880 0.90552 0.91176 0.90465 0.93001 0.92694 0.92714 0.93041 0.93371 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.75 5.93 -4.04 -0.02 1.72 16 3 N -0.60 -12.91 2.46 -175.06 -0.43 -13.34 16 4 C 0.25 6.60 5.16 -5.19 -0.03 6.57 16 5 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 6 H 0.05 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.51 10.77 7.32 -10.99 -0.08 10.69 16 14 O -0.52 -13.47 15.13 5.55 0.08 -13.39 16 15 C 0.03 0.40 2.97 -4.97 -0.01 0.38 16 16 N -0.50 -7.72 4.20 -224.81 -0.94 -8.66 16 17 C 0.05 0.83 5.65 -2.83 -0.02 0.81 16 18 C -0.15 -1.66 6.94 -24.91 -0.17 -1.84 16 19 C -0.12 -1.25 5.57 -24.60 -0.14 -1.38 16 20 C 0.08 0.89 2.10 -66.19 -0.14 0.75 16 21 H 0.05 0.58 7.81 -51.93 -0.41 0.17 16 22 C -0.08 -0.85 2.66 -90.62 -0.24 -1.09 16 23 C -0.15 -1.22 9.02 37.16 0.34 -0.89 16 24 C -0.15 -1.68 7.82 37.16 0.29 -1.39 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.66 7.22 -51.93 -0.37 0.29 16 28 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 29 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 30 H 0.04 1.28 7.42 -51.92 -0.39 0.89 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.05 0.78 7.22 -51.93 -0.38 0.40 16 34 H 0.10 1.41 4.33 -51.93 -0.22 1.18 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.05 0.91 7.31 -51.93 -0.38 0.53 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 40 H 0.07 0.60 8.03 -51.93 -0.42 0.18 16 41 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.42 7.33 -51.93 -0.38 0.04 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.48 7.95 -51.93 -0.41 0.07 16 47 H 0.07 0.95 6.16 -51.93 -0.32 0.63 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -32.66 362.95 -8.99 -41.65 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.61 Total: -1.35 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.27 Total: -1.27 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.64 Total: -48.18 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.66 -8.99 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063618999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.388 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds