Wall clock time and date at job start Tue Mar 31 2020 05:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46509 * 109.47244 * 2 1 4 4 C 1.46498 * 119.99976 * 270.00087 * 3 2 1 5 5 C 1.50701 * 109.46897 * 269.99714 * 4 3 2 6 6 H 1.08002 * 119.99939 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00109 * 179.97438 * 5 4 3 8 8 N 1.31522 * 120.00055 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00467 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46942 * 89.99799 * 9 7 5 11 11 H 1.48500 * 109.47376 * 210.00246 * 9 7 5 12 12 H 1.48501 * 109.47067 * 330.00081 * 9 7 5 13 13 C 1.34777 * 119.99518 * 89.99844 * 3 2 1 14 14 O 1.21288 * 119.99489 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00439 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47264 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99877 * 293.95660 * 16 15 13 18 18 C 1.46903 * 111.00019 * 170.00033 * 16 15 13 19 19 C 1.53002 * 109.46826 * 287.99502 * 18 16 15 20 20 C 1.54266 * 110.03217 * 293.42771 * 19 18 16 21 21 C 1.54968 * 104.15672 * 217.13846 * 20 19 18 22 22 C 1.54888 * 102.78021 * 37.89167 * 21 20 19 23 23 C 1.53879 * 110.02778 * 176.21098 * 19 18 16 24 24 H 1.09005 * 109.46772 * 60.00016 * 1 2 3 25 25 H 1.08992 * 109.47056 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46912 * 300.00364 * 1 2 3 27 27 H 1.08996 * 109.47398 * 240.00217 * 2 1 3 28 28 H 1.08991 * 109.46947 * 119.99857 * 2 1 3 29 29 H 1.09000 * 109.47562 * 29.99629 * 4 3 2 30 30 H 1.08994 * 109.47273 * 150.00149 * 4 3 2 31 31 H 0.96993 * 120.00172 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47066 * 59.99759 * 15 13 3 33 33 H 1.09002 * 109.47115 * 299.99879 * 15 13 3 34 34 H 1.09005 * 109.46726 * 301.46646 * 17 16 15 35 35 H 1.08991 * 109.47444 * 61.46971 * 17 16 15 36 36 H 1.08998 * 109.46991 * 181.47173 * 17 16 15 37 37 H 1.08994 * 109.46921 * 47.99893 * 18 16 15 38 38 H 1.08999 * 109.47030 * 167.99707 * 18 16 15 39 39 H 1.08992 * 110.01724 * 54.82532 * 19 18 16 40 40 H 1.08997 * 110.48683 * 335.78187 * 20 19 18 41 41 H 1.08992 * 110.48325 * 98.43356 * 20 19 18 42 42 H 1.09002 * 110.71918 * 279.57582 * 21 20 19 43 43 H 1.09004 * 110.91925 * 156.30214 * 21 20 19 44 44 H 1.08995 * 110.48943 * 203.40562 * 22 21 20 45 45 H 1.09000 * 110.60148 * 80.81263 * 22 21 20 46 46 H 1.08999 * 110.03163 * 238.56882 * 23 19 18 47 47 H 1.08995 * 110.03511 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6859 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1492 2.3896 -2.8778 8 7 3.3492 3.1257 -3.6181 9 14 5.9132 2.0956 -3.4175 10 1 5.9760 0.8744 -4.2600 11 1 6.3924 3.2626 -4.2007 12 1 6.7736 1.9159 -2.2205 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1602 1.1673 15 6 1.9923 1.3060 2.4723 16 7 2.3098 2.2062 3.5889 17 6 3.7463 2.5111 3.6272 18 6 1.8575 1.6399 4.8667 19 6 0.3307 1.7050 4.9413 20 6 -0.1330 3.1749 5.0065 21 6 -1.3448 3.1476 5.9721 22 6 -0.9096 2.1124 7.0389 23 6 -0.1631 1.0295 6.2327 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.5818 1.6878 -2.0284 30 1 2.0957 3.1411 -1.1384 31 1 3.6753 3.5162 -4.4439 32 1 2.6228 0.4187 2.5298 33 1 0.9444 1.0115 2.5302 34 1 4.3118 1.5845 3.7258 35 1 4.0351 3.0168 2.7059 36 1 3.9578 3.1581 4.4785 37 1 2.1809 0.6015 4.9386 38 1 2.2862 2.2118 5.6896 39 1 -0.1066 1.2137 4.0723 40 1 0.6593 3.8074 5.4068 41 1 -0.4383 3.5227 4.0197 42 1 -2.2435 2.8135 5.4537 43 1 -1.5033 4.1262 6.4254 44 1 -1.7815 1.6858 7.5345 45 1 -0.2433 2.5714 7.7693 46 1 -0.8408 0.2109 5.9903 47 1 0.6850 0.6557 6.8064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064021760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:00 Heat of formation + Delta-G solvation = -45.535027 kcal Electronic energy + Delta-G solvation = -23351.574850 eV Core-core repulsion = 20147.766188 eV Total energy + Delta-G solvation = -3203.808662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.48236 -38.40942 -36.14238 -35.04000 -32.77275 -30.29233 -30.02131 -28.70947 -28.64709 -26.52293 -25.38703 -23.08691 -22.81318 -21.50150 -20.65629 -19.57786 -18.20816 -16.75459 -16.37725 -15.85014 -15.70820 -15.32771 -14.88003 -14.48300 -14.16053 -13.98495 -13.61308 -13.38237 -13.29842 -13.23307 -12.57341 -12.42737 -12.00978 -11.85612 -11.65076 -11.53670 -11.32783 -11.22640 -11.12372 -11.02735 -10.95640 -10.87591 -10.75253 -10.68757 -10.65482 -10.48862 -10.29217 -10.07824 -9.59410 -8.79478 -8.41045 -8.03169 -7.58418 -6.01597 -4.06244 3.30896 3.37592 3.41191 3.52846 3.73906 4.25824 4.47124 4.57245 4.60094 4.69394 5.06373 5.12585 5.28633 5.32551 5.33831 5.37199 5.42748 5.50823 5.52959 5.58266 5.62849 5.68044 5.71652 5.74838 5.78477 5.81121 5.81549 5.89007 5.95989 6.05939 6.06597 6.21525 6.25773 6.36222 6.43578 6.46722 6.50920 7.02281 7.20769 7.28562 7.50749 7.62106 7.95685 8.27438 8.50958 8.94428 9.20957 9.58988 11.06346 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.003820 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.907186 B = 7328.233364 C = 7698.978353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.035 3.965 16 N -0.521 5.521 17 C 0.020 3.980 18 C 0.062 3.938 19 C -0.090 4.090 20 C -0.104 4.104 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.120 4.120 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.015 0.985 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 -6.853 18.286 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.096 4.096 16 N -0.244 5.244 17 C -0.128 4.128 18 C -0.066 4.066 19 C -0.108 4.108 20 C -0.142 4.142 21 C -0.167 4.167 22 C -0.161 4.161 23 C -0.158 4.158 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.034 0.966 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.007 -5.680 18.014 20.515 hybrid contribution 1.396 -1.103 -0.328 1.809 sum -6.611 -6.783 17.686 20.063 Atomic orbital electron populations 1.22222 0.96854 1.01293 1.02355 1.21389 0.93485 0.84426 1.02446 1.48260 1.64235 1.13124 1.07724 1.19227 0.96074 0.93665 0.78149 1.21440 0.97013 1.31743 1.06168 0.92610 1.24932 0.97772 0.94971 0.96440 1.69934 1.35652 1.33479 1.14314 0.86516 0.84800 0.77643 0.78562 1.20702 1.21095 1.19952 1.20140 0.78785 0.87084 0.84712 1.90628 1.44846 1.17743 1.86787 1.22130 1.02203 0.94189 0.91043 1.61609 1.17464 1.43707 1.01648 1.22563 0.86272 0.99419 1.04505 1.22303 0.95155 0.97340 0.91778 1.21797 0.94702 0.96865 0.97477 1.22255 0.96788 0.95622 0.99488 1.22568 0.98517 0.98700 0.96907 1.22337 0.99504 0.96555 0.97700 1.22186 0.99651 0.97960 0.96025 0.92001 0.92279 0.93093 0.90043 0.92060 0.95168 0.93901 0.92760 0.92874 0.88668 0.96606 0.88630 0.91984 0.95185 0.90752 0.91148 0.91428 0.91396 0.91840 0.91914 0.92155 0.91868 0.91975 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.70 16 3 N -0.60 -12.77 2.46 -175.06 -0.43 -13.20 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 10.68 7.41 -10.99 -0.08 10.60 16 14 O -0.52 -13.27 13.88 5.55 0.08 -13.20 16 15 C 0.04 0.56 3.85 -4.98 -0.02 0.54 16 16 N -0.52 -7.89 4.25 -244.38 -1.04 -8.93 16 17 C 0.02 0.31 9.18 60.06 0.55 0.86 16 18 C 0.06 0.72 4.03 -3.82 -0.02 0.71 16 19 C -0.09 -0.95 2.95 -89.50 -0.26 -1.22 16 20 C -0.10 -1.18 6.17 -25.03 -0.15 -1.33 16 21 C -0.13 -1.20 6.91 -24.70 -0.17 -1.37 16 22 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 23 C -0.12 -1.04 6.46 -25.61 -0.17 -1.20 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 27 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.05 0.77 7.37 -51.93 -0.38 0.39 16 33 H 0.10 1.31 5.39 -51.93 -0.28 1.03 16 34 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 35 H 0.10 1.85 5.91 -51.93 -0.31 1.54 16 36 H 0.06 0.84 7.97 -51.93 -0.41 0.42 16 37 H 0.03 0.33 8.05 -51.93 -0.42 -0.09 16 38 H 0.07 0.82 7.77 -51.93 -0.40 0.41 16 39 H 0.07 0.79 6.48 -51.93 -0.34 0.46 16 40 H 0.07 0.81 7.78 -51.93 -0.40 0.40 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.50 7.67 -51.93 -0.40 0.11 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -32.19 365.70 -9.37 -41.56 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.63 Total: -1.73 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.58 Total: -0.94 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.73 Total: -48.19 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.19 -9.37 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064021760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.974 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds