Wall clock time and date at job start Tue Mar 31 2020 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46903 * 110.99774 * 2 1 4 4 C 1.46894 * 111.00220 * 123.95676 * 2 1 3 5 5 C 1.52998 * 109.47402 * 169.99937 * 4 2 1 6 6 C 1.52999 * 109.47359 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47064 * 176.62977 * 6 5 4 8 8 C 1.46499 * 120.00141 * 266.94165 * 7 6 5 9 9 C 1.50698 * 109.47335 * 269.99955 * 8 7 6 10 10 H 1.08006 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99954 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00407 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99879 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47176 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47029 * 120.00026 * 13 11 9 16 16 H 1.48500 * 109.47348 * 240.00174 * 13 11 9 17 17 C 1.34777 * 119.99726 * 86.94418 * 7 6 5 18 18 O 1.21279 * 120.00204 * 5.22800 * 17 7 6 19 19 C 1.50707 * 119.99987 * 184.94723 * 17 7 6 20 20 C 1.54262 * 110.03318 * 269.97585 * 19 17 7 21 21 C 1.54972 * 104.15744 * 217.13531 * 20 19 17 22 22 C 1.54891 * 102.77695 * 37.88795 * 21 20 19 23 23 C 1.53878 * 110.03021 * 152.75471 * 19 17 7 24 24 H 1.09003 * 109.46913 * 296.04431 * 1 2 3 25 25 H 1.08999 * 109.47332 * 56.04438 * 1 2 3 26 26 H 1.09001 * 109.46912 * 176.04876 * 1 2 3 27 27 H 1.08997 * 109.46781 * 183.95797 * 3 2 1 28 28 H 1.08998 * 109.46978 * 303.95400 * 3 2 1 29 29 H 1.08995 * 109.47072 * 63.96042 * 3 2 1 30 30 H 1.08998 * 109.47075 * 49.99406 * 4 2 1 31 31 H 1.09011 * 109.47043 * 289.99809 * 4 2 1 32 32 H 1.09005 * 109.47064 * 59.99829 * 5 4 2 33 33 H 1.08997 * 109.46978 * 299.99915 * 5 4 2 34 34 H 1.09000 * 109.46969 * 56.62897 * 6 5 4 35 35 H 1.09000 * 109.46978 * 296.63191 * 6 5 4 36 36 H 1.08997 * 109.46881 * 30.00127 * 8 7 6 37 37 H 1.09001 * 109.46722 * 149.99875 * 8 7 6 38 38 H 0.96994 * 120.00532 * 180.02562 * 12 11 9 39 39 H 1.08997 * 110.01052 * 31.36638 * 19 17 7 40 40 H 1.08994 * 110.48643 * 335.78057 * 20 19 17 41 41 H 1.09000 * 110.48512 * 98.43045 * 20 19 17 42 42 H 1.09002 * 110.71920 * 279.57333 * 21 20 19 43 43 H 1.08994 * 110.92055 * 156.29776 * 21 20 19 44 44 H 1.09003 * 110.48619 * 203.40533 * 22 21 20 45 45 H 1.09000 * 110.60205 * 80.81679 * 22 21 20 46 46 H 1.08998 * 110.03141 * 238.57362 * 23 19 17 47 47 H 1.09005 * 110.03059 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 6 4.0530 -1.7526 2.1553 7 7 5.4825 -2.0032 1.9556 8 6 5.9261 -3.2431 1.3137 9 6 6.1446 -4.3020 2.3635 10 1 5.9700 -4.0742 3.4048 11 6 6.5664 -5.5617 1.9947 12 7 6.7786 -5.8392 0.7268 13 14 6.8366 -6.8744 3.2960 14 1 6.5299 -6.3134 4.6362 15 1 5.9427 -8.0294 3.0270 16 1 8.2513 -7.3243 3.2591 17 6 6.3894 -1.0930 2.3624 18 8 6.0298 -0.1119 2.9779 19 6 7.8511 -1.2977 2.0580 20 6 8.5235 -2.0864 3.2007 21 6 9.9319 -1.4513 3.3220 22 6 9.6519 0.0523 3.0771 23 6 8.5684 0.0614 1.9791 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0828 1.3433 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 1.5090 -1.7406 1.1755 31 1 1.7976 -0.2247 2.0628 32 1 3.9910 0.0193 0.9322 33 1 3.7024 -1.4966 0.0450 34 1 3.5244 -2.7030 2.2296 35 1 3.9086 -1.1838 3.0739 36 1 5.1650 -3.5805 0.6103 37 1 6.8593 -3.0623 0.7803 38 1 7.0749 -6.7256 0.4673 39 1 7.9644 -1.8350 1.1164 40 1 7.9673 -1.9609 4.1296 41 1 8.6014 -3.1422 2.9411 42 1 10.6012 -1.8489 2.5591 43 1 10.3459 -1.6100 4.3177 44 1 10.5532 0.5562 2.7278 45 1 9.2788 0.5258 3.9851 46 1 9.0305 0.1833 0.9994 47 1 7.8593 0.8689 2.1614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064361868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:24 Heat of formation + Delta-G solvation = -53.514813 kcal Electronic energy + Delta-G solvation = -23400.414803 eV Core-core repulsion = 20196.260112 eV Total energy + Delta-G solvation = -3204.154692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.56231 -37.68809 -36.56872 -35.05930 -32.88843 -31.54858 -28.78902 -28.19026 -27.60091 -27.32535 -25.68561 -22.96114 -22.79606 -20.80658 -20.26953 -20.17713 -17.85070 -16.75387 -16.42789 -15.76880 -15.45641 -15.08304 -14.89673 -14.70881 -14.44294 -14.20303 -13.71303 -13.41657 -12.89189 -12.69977 -12.40407 -12.33405 -12.14263 -11.77912 -11.64811 -11.49617 -11.30790 -11.19356 -11.13029 -10.84182 -10.82751 -10.74563 -10.65954 -10.52817 -10.24785 -10.22977 -10.10882 -9.92848 -9.65502 -8.89620 -8.50611 -8.34218 -7.66474 -6.16485 -4.22661 3.21713 3.30799 3.34361 3.46224 3.85280 4.13565 4.35219 5.02842 5.06775 5.11918 5.14716 5.17282 5.25665 5.29870 5.38341 5.52735 5.64254 5.66150 5.72196 5.79381 5.82330 5.86816 5.92893 5.96864 6.01663 6.04436 6.05945 6.15687 6.19817 6.28615 6.35164 6.48570 6.52534 6.65532 6.68295 6.76533 6.87463 6.93283 7.04511 7.07560 7.24751 7.59894 7.79289 8.09021 8.40237 8.83033 9.09464 9.44481 10.90258 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.005742 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.195548 B = 4875.262516 C = 6835.727182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.128 4.128 6 C 0.122 3.878 7 N -0.594 5.594 8 C 0.236 3.764 9 C -0.530 4.530 10 H 0.061 0.939 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.892 3.108 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.524 3.476 18 O -0.577 6.577 19 C -0.107 4.107 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.114 4.114 24 H 0.022 0.978 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.041 0.959 38 H 0.264 0.736 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 9.681 -0.265 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.167 4.167 6 C -0.002 4.002 7 N -0.323 5.323 8 C 0.116 3.884 9 C -0.569 4.569 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.312 3.688 18 O -0.459 6.459 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.152 4.152 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.167 9.778 -0.522 10.291 hybrid contribution -0.205 -0.623 1.278 1.436 sum -3.372 9.154 0.756 9.785 Atomic orbital electron populations 1.22371 0.87672 1.02184 1.00113 1.61977 1.07482 1.13940 1.43767 1.22424 1.01481 0.88716 0.99980 1.22083 0.96070 0.97996 0.90768 1.21947 0.93645 1.01062 1.00074 1.21170 0.82144 0.99760 0.97171 1.48200 1.04910 1.20566 1.58666 1.19479 0.96234 0.79412 0.93251 1.21499 1.45788 0.95669 0.93897 0.92125 1.24908 0.95190 0.98292 0.95343 1.69927 1.45988 1.21798 1.15275 0.86532 0.77949 0.81645 0.81936 1.19677 1.20927 1.20813 1.20461 0.88213 0.81925 0.78165 1.90546 1.81649 1.31262 1.42447 1.21852 0.91920 0.97342 1.01667 1.22210 0.94053 1.00434 0.97083 1.22542 0.97493 0.95239 1.00981 1.22317 0.97861 0.96693 0.98900 1.22125 0.97645 0.97071 0.98366 0.95921 0.91630 0.91338 0.90871 0.91771 0.95806 0.90598 0.94885 0.91991 0.90910 0.90473 0.91431 0.94739 0.94149 0.92631 0.88634 0.91986 0.89350 0.91610 0.91997 0.92329 0.91866 0.92176 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.07 0.57 0.84 16 2 N -0.55 -7.23 5.02 -251.26 -1.26 -8.49 16 3 C 0.02 0.27 9.32 60.07 0.56 0.83 16 4 C 0.06 0.82 4.96 -3.83 -0.02 0.81 16 5 C -0.13 -2.10 5.45 -26.73 -0.15 -2.24 16 6 C 0.12 2.27 5.42 -4.04 -0.02 2.24 16 7 N -0.59 -12.52 2.46 -175.06 -0.43 -12.95 16 8 C 0.24 5.52 5.03 -5.20 -0.03 5.50 16 9 C -0.53 -13.45 8.67 -34.44 -0.30 -13.74 16 10 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 13 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.52 11.03 6.60 -10.98 -0.07 10.96 16 18 O -0.58 -13.12 15.24 5.56 0.08 -13.04 16 19 C -0.11 -2.00 2.60 -90.65 -0.24 -2.23 16 20 C -0.10 -1.83 6.17 -25.03 -0.15 -1.98 16 21 C -0.12 -1.85 6.91 -24.69 -0.17 -2.03 16 22 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 23 C -0.11 -1.84 6.33 -25.61 -0.16 -2.00 16 24 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 26 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 27 H 0.07 0.95 6.47 -51.93 -0.34 0.61 16 28 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 31 H 0.03 0.45 8.12 -51.92 -0.42 0.03 16 32 H 0.06 1.07 6.55 -51.93 -0.34 0.73 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 35 H 0.07 1.28 7.45 -51.93 -0.39 0.90 16 36 H 0.03 0.85 8.07 -51.93 -0.42 0.44 16 37 H 0.04 0.98 5.76 -51.93 -0.30 0.68 16 38 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.10 1.84 6.05 -51.93 -0.31 1.53 16 40 H 0.06 1.20 7.85 -51.93 -0.41 0.80 16 41 H 0.09 1.77 7.61 -51.93 -0.40 1.37 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 1.34 6.77 -51.93 -0.35 0.98 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -28.13 368.60 -9.48 -37.61 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.70 Total: 2.84 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -0.44 Total: -3.35 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.96 Total: -44.92 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.13 -9.48 -37.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064361868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.907 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds