Wall clock time and date at job start Tue Mar 31 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46903 * 110.99774 * 2 1 4 4 C 1.46894 * 111.00220 * 123.95676 * 2 1 3 5 5 C 1.52998 * 109.47402 * 169.99937 * 4 2 1 6 6 C 1.52999 * 109.47359 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47064 * 176.62977 * 6 5 4 8 8 C 1.46499 * 120.00141 * 266.94165 * 7 6 5 9 9 C 1.50698 * 109.47335 * 269.99955 * 8 7 6 10 10 H 1.08006 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99954 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00407 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99879 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47176 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47029 * 120.00026 * 13 11 9 16 16 H 1.48500 * 109.47348 * 240.00174 * 13 11 9 17 17 C 1.34777 * 119.99726 * 86.94418 * 7 6 5 18 18 O 1.21279 * 120.00204 * 5.22800 * 17 7 6 19 19 C 1.50707 * 119.99987 * 184.94723 * 17 7 6 20 20 C 1.54262 * 110.03318 * 269.97585 * 19 17 7 21 21 C 1.54972 * 104.15744 * 217.13531 * 20 19 17 22 22 C 1.54891 * 102.77695 * 37.88795 * 21 20 19 23 23 C 1.53878 * 110.03021 * 152.75471 * 19 17 7 24 24 H 1.09003 * 109.46913 * 296.04431 * 1 2 3 25 25 H 1.08999 * 109.47332 * 56.04438 * 1 2 3 26 26 H 1.09001 * 109.46912 * 176.04876 * 1 2 3 27 27 H 1.08997 * 109.46781 * 183.95797 * 3 2 1 28 28 H 1.08998 * 109.46978 * 303.95400 * 3 2 1 29 29 H 1.08995 * 109.47072 * 63.96042 * 3 2 1 30 30 H 1.08998 * 109.47075 * 49.99406 * 4 2 1 31 31 H 1.09011 * 109.47043 * 289.99809 * 4 2 1 32 32 H 1.09005 * 109.47064 * 59.99829 * 5 4 2 33 33 H 1.08997 * 109.46978 * 299.99915 * 5 4 2 34 34 H 1.09000 * 109.46969 * 56.62897 * 6 5 4 35 35 H 1.09000 * 109.46978 * 296.63191 * 6 5 4 36 36 H 1.08997 * 109.46881 * 30.00127 * 8 7 6 37 37 H 1.09001 * 109.46722 * 149.99875 * 8 7 6 38 38 H 0.96994 * 120.00532 * 180.02562 * 12 11 9 39 39 H 1.08997 * 110.01052 * 31.36638 * 19 17 7 40 40 H 1.08994 * 110.48643 * 335.78057 * 20 19 17 41 41 H 1.09000 * 110.48512 * 98.43045 * 20 19 17 42 42 H 1.09002 * 110.71920 * 279.57333 * 21 20 19 43 43 H 1.08994 * 110.92055 * 156.29776 * 21 20 19 44 44 H 1.09003 * 110.48619 * 203.40533 * 22 21 20 45 45 H 1.09000 * 110.60205 * 80.81679 * 22 21 20 46 46 H 1.08998 * 110.03141 * 238.57362 * 23 19 17 47 47 H 1.09005 * 110.03059 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 6 4.0530 -1.7526 2.1553 7 7 5.4825 -2.0032 1.9556 8 6 5.9261 -3.2431 1.3137 9 6 6.1446 -4.3020 2.3635 10 1 5.9700 -4.0742 3.4048 11 6 6.5664 -5.5617 1.9947 12 7 6.7786 -5.8392 0.7268 13 14 6.8366 -6.8744 3.2960 14 1 6.5299 -6.3134 4.6362 15 1 5.9427 -8.0294 3.0270 16 1 8.2513 -7.3243 3.2591 17 6 6.3894 -1.0930 2.3624 18 8 6.0298 -0.1119 2.9779 19 6 7.8511 -1.2977 2.0580 20 6 8.5235 -2.0864 3.2007 21 6 9.9319 -1.4513 3.3220 22 6 9.6519 0.0523 3.0771 23 6 8.5684 0.0614 1.9791 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0828 1.3433 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 1.5090 -1.7406 1.1755 31 1 1.7976 -0.2247 2.0628 32 1 3.9910 0.0193 0.9322 33 1 3.7024 -1.4966 0.0450 34 1 3.5244 -2.7030 2.2296 35 1 3.9086 -1.1838 3.0739 36 1 5.1650 -3.5805 0.6103 37 1 6.8593 -3.0623 0.7803 38 1 7.0749 -6.7256 0.4673 39 1 7.9644 -1.8350 1.1164 40 1 7.9673 -1.9609 4.1296 41 1 8.6014 -3.1422 2.9411 42 1 10.6012 -1.8489 2.5591 43 1 10.3459 -1.6100 4.3177 44 1 10.5532 0.5562 2.7278 45 1 9.2788 0.5258 3.9851 46 1 9.0305 0.1833 0.9994 47 1 7.8593 0.8689 2.1614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064361868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:23 Heat of formation + Delta-G solvation = -68.772475 kcal Electronic energy + Delta-G solvation = -23401.076425 eV Core-core repulsion = 20196.260112 eV Total energy + Delta-G solvation = -3204.816313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19756 -38.82013 -37.93512 -36.80027 -34.74577 -33.07328 -30.14407 -29.53382 -29.19374 -28.51247 -27.03973 -24.90282 -24.06487 -22.03410 -21.64160 -21.46993 -19.52373 -18.47973 -18.30275 -17.29011 -16.62029 -16.40098 -16.30570 -16.22599 -15.91700 -15.46475 -15.02613 -14.84256 -14.35797 -14.26438 -14.13321 -13.52653 -13.35811 -13.28582 -12.96125 -12.90927 -12.73179 -12.61543 -12.50461 -12.45442 -12.37561 -12.10249 -12.03423 -11.96816 -11.81550 -11.68915 -11.58535 -11.45041 -11.32276 -10.69448 -10.43299 -9.45112 -9.34390 -8.17857 -6.30599 1.39886 1.43780 1.53485 1.76901 2.28326 2.45815 3.02475 3.12687 3.63708 3.77608 3.81659 3.93982 4.09674 4.20186 4.25522 4.39543 4.44021 4.49422 4.53974 4.58782 4.59607 4.63214 4.65249 4.73556 4.74893 4.77601 4.86095 4.94266 4.97346 4.99804 5.08040 5.10700 5.11931 5.19429 5.25402 5.26950 5.38051 5.46582 5.50784 5.68482 5.87476 6.02310 6.09035 6.09870 6.59048 6.84194 7.32824 7.44083 8.88232 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.005742 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.195548 B = 4875.262516 C = 6835.727182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.564 5.564 3 C 0.023 3.977 4 C 0.066 3.934 5 C -0.112 4.112 6 C 0.120 3.880 7 N -0.599 5.599 8 C 0.253 3.747 9 C -0.533 4.533 10 H 0.049 0.951 11 C 0.026 3.974 12 N -0.919 5.919 13 Si 0.950 3.050 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.276 1.276 17 C 0.518 3.482 18 O -0.596 6.596 19 C -0.109 4.109 20 C -0.099 4.099 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.111 4.111 24 H 0.029 0.971 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.027 0.973 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.018 0.982 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 10.142 0.011 10.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.125 4.125 4 C -0.062 4.062 5 C -0.151 4.151 6 C -0.004 4.004 7 N -0.328 5.328 8 C 0.132 3.868 9 C -0.571 4.571 10 H 0.067 0.933 11 C -0.175 4.175 12 N -0.559 5.559 13 Si 0.776 3.224 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.201 1.201 17 C 0.308 3.692 18 O -0.479 6.479 19 C -0.130 4.130 20 C -0.137 4.137 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.149 4.149 24 H 0.047 0.953 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.036 0.964 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.796 10.248 -0.246 10.626 hybrid contribution -0.378 -0.747 1.173 1.441 sum -3.173 9.501 0.926 10.060 Atomic orbital electron populations 1.22432 0.85833 1.02893 1.01127 1.61958 1.09232 1.14450 1.43203 1.22427 1.00618 0.88456 1.00990 1.21957 0.94092 0.98724 0.91442 1.21741 0.95523 0.99638 0.98188 1.21283 0.81028 1.00030 0.98019 1.48237 1.06121 1.19960 1.58478 1.19124 0.95229 0.79896 0.92533 1.21569 1.45662 0.96380 0.93537 0.93317 1.25544 0.94899 1.00026 0.96981 1.70008 1.46702 1.22427 1.16745 0.85626 0.78047 0.79211 0.79534 1.19750 1.20546 1.20136 1.20911 0.89201 0.81449 0.77648 1.90524 1.82170 1.31860 1.43324 1.21931 0.90672 0.99146 1.01269 1.22147 0.96390 0.99338 0.95855 1.22528 0.95167 0.95211 1.02496 1.22305 0.98309 0.96440 0.98046 1.22130 0.97764 0.94563 1.00406 0.95257 0.90124 0.90930 0.92406 0.89898 0.95488 0.89976 0.94568 0.93037 0.92240 0.90502 0.91854 0.96367 0.94992 0.92373 0.89550 0.93756 0.91625 0.90341 0.90308 0.89232 0.92264 0.90133 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.57 127.69 1.22 1.70 16 2 N -0.56 -14.30 5.02 -948.83 -4.76 -19.07 16 3 C 0.02 0.54 9.32 127.69 1.19 1.73 16 4 C 0.07 1.82 4.96 86.30 0.43 2.25 16 5 C -0.11 -3.73 5.45 30.59 0.17 -3.57 16 6 C 0.12 4.58 5.42 86.38 0.47 5.05 16 7 N -0.60 -26.03 2.46 -826.17 -2.03 -28.06 16 8 C 0.25 12.19 5.03 85.63 0.43 12.63 16 9 C -0.53 -27.53 8.67 25.60 0.22 -27.31 16 10 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 11 C 0.03 1.34 5.46 84.65 0.46 1.80 16 12 N -0.92 -50.23 13.29 21.45 0.28 -49.95 16 13 Si 0.95 41.66 29.54 68.60 2.03 43.68 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 17 C 0.52 22.32 6.60 87.66 0.58 22.90 16 18 O -0.60 -27.54 15.24 -3.03 -0.05 -27.59 16 19 C -0.11 -4.12 2.60 -10.81 -0.03 -4.14 16 20 C -0.10 -3.63 6.17 31.70 0.20 -3.44 16 21 C -0.12 -3.22 6.91 31.91 0.22 -3.00 16 22 C -0.11 -2.97 6.83 31.67 0.22 -2.76 16 23 C -0.11 -3.45 6.33 31.32 0.20 -3.25 16 24 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 26 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 27 H 0.06 1.49 6.47 -2.39 -0.02 1.48 16 28 H 0.08 1.58 8.12 -2.39 -0.02 1.56 16 29 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 2.14 8.06 -2.39 -0.02 2.12 16 31 H 0.04 0.97 8.12 -2.38 -0.02 0.95 16 32 H 0.05 1.82 6.55 -2.38 -0.02 1.80 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.90 8.05 -2.39 -0.02 2.88 16 35 H 0.06 2.46 7.45 -2.39 -0.02 2.45 16 36 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 37 H 0.03 1.60 5.76 -2.39 -0.01 1.59 16 38 H 0.27 13.83 8.31 -92.71 -0.77 13.05 16 39 H 0.09 3.40 6.05 -2.39 -0.01 3.38 16 40 H 0.04 1.74 7.85 -2.39 -0.02 1.73 16 41 H 0.06 2.67 7.61 -2.39 -0.02 2.65 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 2.10 6.77 -2.38 -0.02 2.09 16 Total: -1.00 -59.88 368.60 2.35 -57.54 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.91 Total: 22.85 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.97 Total: 0.59 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -6.51 Total: -97.07 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -59.88 2.35 -57.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064361868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.237 kcal (2) G-P(sol) polarization free energy of solvation -59.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds