Wall clock time and date at job start Tue Mar 31 2020 05:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46895 * 109.47354 * 2 1 4 4 C 1.46894 * 111.00223 * 288.08250 * 3 2 1 5 5 C 1.50700 * 109.47429 * 160.34785 * 4 3 2 6 6 H 1.07996 * 119.99877 * 4.70137 * 5 4 3 7 7 C 1.37877 * 120.00272 * 184.70853 * 5 4 3 8 8 N 1.31518 * 119.99682 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00197 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46727 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46966 * 119.99878 * 9 7 5 12 12 H 1.48494 * 109.47227 * 239.99643 * 9 7 5 13 13 C 1.46906 * 110.99891 * 164.12484 * 3 2 1 14 14 N 1.46499 * 109.47027 * 278.95658 * 13 3 2 15 15 C 1.46765 * 124.34827 * 269.94936 * 14 13 3 16 16 C 1.54472 * 105.47286 * 197.04053 * 15 14 13 17 17 H 1.09005 * 111.00411 * 216.45302 * 16 15 14 18 18 C 1.53002 * 110.97297 * 92.70536 * 16 15 14 19 19 C 1.53000 * 109.47315 * 181.16898 * 18 16 15 20 20 C 1.52999 * 109.46819 * 174.99943 * 19 18 16 21 21 C 1.52995 * 109.47022 * 294.99593 * 19 18 16 22 22 C 1.54628 * 101.76589 * 334.58286 * 16 15 14 23 23 C 1.34417 * 124.34901 * 89.97502 * 14 13 3 24 24 O 1.21274 * 124.94153 * 359.53745 * 23 14 13 25 25 H 1.09006 * 109.46940 * 59.39626 * 1 2 3 26 26 H 1.09000 * 109.47118 * 179.39899 * 1 2 3 27 27 H 1.08999 * 109.47044 * 299.40191 * 1 2 3 28 28 H 1.09004 * 109.46634 * 240.00023 * 2 1 3 29 29 H 1.08995 * 109.46913 * 120.00647 * 2 1 3 30 30 H 1.09004 * 109.47226 * 280.34826 * 4 3 2 31 31 H 1.08998 * 109.47616 * 40.34526 * 4 3 2 32 32 H 0.97007 * 119.99187 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46628 * 158.95835 * 13 3 2 34 34 H 1.09000 * 109.46825 * 38.95991 * 13 3 2 35 35 H 1.09001 * 110.24423 * 78.03812 * 15 14 13 36 36 H 1.09003 * 110.24542 * 316.04086 * 15 14 13 37 37 H 1.09000 * 109.46905 * 301.16704 * 18 16 15 38 38 H 1.09003 * 109.47134 * 61.16507 * 18 16 15 39 39 H 1.08995 * 109.47132 * 54.99561 * 19 18 16 40 40 H 1.09002 * 109.47313 * 59.99636 * 20 19 18 41 41 H 1.09001 * 109.47080 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.47333 * 299.99701 * 20 19 18 43 43 H 1.09000 * 109.47638 * 180.02562 * 21 19 18 44 44 H 1.09002 * 109.47797 * 300.00479 * 21 19 18 45 45 H 1.09009 * 109.47327 * 60.00092 * 21 19 18 46 46 H 1.09004 * 110.48569 * 143.47280 * 22 16 15 47 47 H 1.08996 * 110.48992 * 265.98687 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7940 2.0232 -1.3036 5 6 1.8453 3.5210 -1.1453 6 1 2.1023 3.9545 -0.1902 7 6 1.5640 4.3378 -2.2198 8 7 1.2513 3.8099 -3.3831 9 14 1.6268 6.1945 -2.0234 10 1 2.0012 6.5319 -0.6265 11 1 2.6367 6.7569 -2.9556 12 1 0.2934 6.7703 -2.3320 13 6 3.4390 1.4415 0.3752 14 7 3.5618 1.3707 1.8333 15 6 3.5672 2.5390 2.7215 16 6 4.1438 2.0343 4.0628 17 1 3.6505 2.5171 4.9065 18 6 5.6578 2.2470 4.1226 19 6 6.1962 1.7098 5.4502 20 6 7.7230 1.8084 5.4586 21 6 5.6255 2.5368 6.6040 22 6 3.7983 0.5282 4.0077 23 6 3.6845 0.2274 2.5295 24 8 3.7010 -0.8835 2.0433 25 1 -0.3633 0.5232 -0.8846 26 1 -0.3633 -1.0276 -0.0108 27 1 -0.3633 0.5045 0.8953 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.5674 1.7050 -2.0028 31 1 0.8160 1.7316 -1.6865 32 1 1.0538 4.3847 -4.1391 33 1 3.8719 2.3762 0.0190 34 1 3.9676 0.6013 -0.0753 35 1 2.5521 2.9099 2.8630 36 1 4.2021 3.3233 2.3093 37 1 6.1321 1.7166 3.2969 38 1 5.8785 3.3116 4.0451 39 1 5.8987 0.6679 5.5680 40 1 8.0205 2.8503 5.3407 41 1 8.1066 1.4261 6.4045 42 1 8.1297 1.2192 4.6366 43 1 6.0094 2.1544 7.5498 44 1 5.9230 3.5788 6.4862 45 1 4.5377 2.4666 6.5980 46 1 4.5964 -0.0630 4.4569 47 1 2.8516 0.3352 4.5123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072915520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:09 Heat of formation + Delta-G solvation = -49.212070 kcal Electronic energy + Delta-G solvation = -23405.428109 eV Core-core repulsion = 20201.459998 eV Total energy + Delta-G solvation = -3203.968111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37435 -37.40255 -36.63918 -35.30715 -32.68660 -31.94696 -29.77435 -28.05563 -27.39334 -27.09519 -25.86551 -24.08986 -22.58120 -21.29757 -20.15441 -19.70283 -18.86534 -16.66408 -16.48942 -16.20178 -15.30110 -15.06061 -14.77457 -14.36581 -14.19357 -13.88518 -13.76914 -13.48508 -13.19464 -12.94848 -12.84920 -12.49728 -12.31142 -12.13814 -11.80485 -11.76476 -11.62145 -11.42192 -11.28489 -11.13958 -10.91543 -10.86875 -10.72570 -10.65145 -10.53859 -10.49259 -10.26906 -9.76622 -9.40252 -9.26377 -8.48495 -8.36420 -7.29704 -6.05507 -4.07472 2.91321 3.27675 3.35527 3.38647 3.44387 4.34613 4.39302 4.49457 4.60295 4.75012 4.86959 5.01118 5.06247 5.14700 5.30441 5.34602 5.41701 5.45803 5.61890 5.63597 5.71969 5.74384 5.76486 5.79772 5.84360 5.88146 5.94298 5.95921 6.05989 6.09862 6.17722 6.21263 6.22475 6.27064 6.47610 6.66490 6.82496 6.90859 7.16967 7.33559 7.57378 7.79757 8.09044 8.16621 8.49687 8.57016 9.00126 9.56914 11.04862 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.004636 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.651312 B = 6038.231401 C = 7279.292902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 N -0.549 5.549 4 C 0.194 3.806 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.295 3.705 14 N -0.597 5.597 15 C 0.111 3.889 16 C -0.102 4.102 17 H 0.096 0.904 18 C -0.107 4.107 19 C -0.099 4.099 20 C -0.148 4.148 21 C -0.149 4.149 22 C -0.152 4.152 23 C 0.515 3.485 24 O -0.545 6.545 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.071 0.929 30 H -0.010 1.010 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.097 0.903 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.143 -2.606 17.620 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 N -0.276 5.276 4 C 0.069 3.931 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.084 3.916 14 N -0.331 5.331 15 C -0.013 4.013 16 C -0.121 4.121 17 H 0.114 0.886 18 C -0.145 4.145 19 C -0.117 4.117 20 C -0.205 4.205 21 C -0.206 4.206 22 C -0.192 4.192 23 C 0.302 3.698 24 O -0.423 6.423 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.007 0.993 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.833 -2.853 17.416 19.309 hybrid contribution 0.283 0.689 -0.693 1.017 sum 8.116 -2.164 16.723 18.714 Atomic orbital electron populations 1.21725 0.95747 0.99823 1.02486 1.22131 0.95708 0.90175 1.00124 1.61902 1.15881 1.15272 1.34529 1.19751 0.96781 0.94092 0.82488 1.21179 1.46379 0.90551 0.96328 0.91980 1.24990 0.95422 0.98922 0.95216 1.69972 1.47429 1.35156 1.01102 0.86469 0.77611 0.85407 0.78070 1.19708 1.21149 1.21043 1.21766 0.90734 1.01755 0.77349 1.48477 1.70285 1.06797 1.07493 1.22092 1.01731 0.88784 0.88660 1.22264 0.96671 0.95125 0.98051 0.88611 1.21667 0.93860 1.01671 0.97255 1.21157 0.95393 1.00157 0.95029 1.21840 0.95360 1.01807 1.01509 1.21892 1.01096 0.99972 0.97635 1.22452 1.04191 0.97329 0.95238 1.20815 0.75423 0.84259 0.89319 1.90670 1.52016 1.23778 1.75867 0.92172 0.93745 0.92787 0.96092 0.91070 0.99268 0.94171 0.92949 0.88298 0.93472 0.90643 0.90375 0.91654 0.91180 0.91014 0.92711 0.92893 0.92718 0.93040 0.92694 0.92300 0.88493 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.99 37.16 0.37 -2.26 16 2 C 0.05 0.96 5.53 -3.82 -0.02 0.94 16 3 N -0.55 -12.03 4.48 -239.98 -1.07 -13.11 16 4 C 0.19 4.98 4.54 -4.98 -0.02 4.96 16 5 C -0.51 -13.71 8.52 -34.44 -0.29 -14.01 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 9 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.29 5.80 5.55 -63.31 -0.35 5.45 16 14 N -0.60 -9.84 3.14 -175.91 -0.55 -10.40 16 15 C 0.11 1.45 6.90 -3.13 -0.02 1.43 16 16 C -0.10 -1.00 2.95 -88.99 -0.26 -1.26 16 17 H 0.10 0.77 6.54 -51.93 -0.34 0.43 16 18 C -0.11 -0.96 4.12 -26.73 -0.11 -1.07 16 19 C -0.10 -0.77 2.82 -90.62 -0.26 -1.03 16 20 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 21 C -0.15 -1.03 8.96 37.15 0.33 -0.69 16 22 C -0.15 -1.74 6.26 -26.74 -0.17 -1.90 16 23 C 0.51 8.45 7.36 -10.86 -0.08 8.37 16 24 O -0.54 -10.95 15.79 5.56 0.09 -10.87 16 25 H 0.06 1.22 6.52 -51.93 -0.34 0.88 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 29 H 0.07 1.47 5.22 -51.93 -0.27 1.20 16 30 H -0.01 -0.29 8.00 -51.93 -0.42 -0.70 16 31 H 0.04 1.11 6.23 -51.93 -0.32 0.79 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.10 2.00 7.25 -51.93 -0.38 1.62 16 34 H 0.05 0.96 7.71 -51.93 -0.40 0.56 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.58 6.38 -51.93 -0.33 0.25 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.39 6.53 -51.92 -0.34 0.05 16 46 H 0.10 1.00 6.23 -51.93 -0.32 0.68 16 47 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -30.83 363.97 -9.46 -40.29 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.48 Total: -1.57 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.64 Total: -0.40 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.89 Total: -48.97 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.83 -9.46 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072915520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.925 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds