Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46895 * 109.47354 * 2 1 4 4 C 1.46894 * 111.00223 * 288.08250 * 3 2 1 5 5 C 1.50700 * 109.47429 * 160.34785 * 4 3 2 6 6 H 1.07996 * 119.99877 * 4.70137 * 5 4 3 7 7 C 1.37877 * 120.00272 * 184.70853 * 5 4 3 8 8 N 1.31518 * 119.99682 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00197 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46727 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46966 * 119.99878 * 9 7 5 12 12 H 1.48494 * 109.47227 * 239.99643 * 9 7 5 13 13 C 1.46906 * 110.99891 * 164.12484 * 3 2 1 14 14 N 1.46499 * 109.47027 * 278.95658 * 13 3 2 15 15 C 1.46765 * 124.34827 * 269.94936 * 14 13 3 16 16 C 1.54472 * 105.47286 * 197.04053 * 15 14 13 17 17 H 1.09005 * 111.00411 * 216.45302 * 16 15 14 18 18 C 1.53002 * 110.97297 * 92.70536 * 16 15 14 19 19 C 1.53000 * 109.47315 * 181.16898 * 18 16 15 20 20 C 1.52999 * 109.46819 * 174.99943 * 19 18 16 21 21 C 1.52995 * 109.47022 * 294.99593 * 19 18 16 22 22 C 1.54628 * 101.76589 * 334.58286 * 16 15 14 23 23 C 1.34417 * 124.34901 * 89.97502 * 14 13 3 24 24 O 1.21274 * 124.94153 * 359.53745 * 23 14 13 25 25 H 1.09006 * 109.46940 * 59.39626 * 1 2 3 26 26 H 1.09000 * 109.47118 * 179.39899 * 1 2 3 27 27 H 1.08999 * 109.47044 * 299.40191 * 1 2 3 28 28 H 1.09004 * 109.46634 * 240.00023 * 2 1 3 29 29 H 1.08995 * 109.46913 * 120.00647 * 2 1 3 30 30 H 1.09004 * 109.47226 * 280.34826 * 4 3 2 31 31 H 1.08998 * 109.47616 * 40.34526 * 4 3 2 32 32 H 0.97007 * 119.99187 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46628 * 158.95835 * 13 3 2 34 34 H 1.09000 * 109.46825 * 38.95991 * 13 3 2 35 35 H 1.09001 * 110.24423 * 78.03812 * 15 14 13 36 36 H 1.09003 * 110.24542 * 316.04086 * 15 14 13 37 37 H 1.09000 * 109.46905 * 301.16704 * 18 16 15 38 38 H 1.09003 * 109.47134 * 61.16507 * 18 16 15 39 39 H 1.08995 * 109.47132 * 54.99561 * 19 18 16 40 40 H 1.09002 * 109.47313 * 59.99636 * 20 19 18 41 41 H 1.09001 * 109.47080 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.47333 * 299.99701 * 20 19 18 43 43 H 1.09000 * 109.47638 * 180.02562 * 21 19 18 44 44 H 1.09002 * 109.47797 * 300.00479 * 21 19 18 45 45 H 1.09009 * 109.47327 * 60.00092 * 21 19 18 46 46 H 1.09004 * 110.48569 * 143.47280 * 22 16 15 47 47 H 1.08996 * 110.48992 * 265.98687 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7940 2.0232 -1.3036 5 6 1.8453 3.5210 -1.1453 6 1 2.1023 3.9545 -0.1902 7 6 1.5640 4.3378 -2.2198 8 7 1.2513 3.8099 -3.3831 9 14 1.6268 6.1945 -2.0234 10 1 2.0012 6.5319 -0.6265 11 1 2.6367 6.7569 -2.9556 12 1 0.2934 6.7703 -2.3320 13 6 3.4390 1.4415 0.3752 14 7 3.5618 1.3707 1.8333 15 6 3.5672 2.5390 2.7215 16 6 4.1438 2.0343 4.0628 17 1 3.6505 2.5171 4.9065 18 6 5.6578 2.2470 4.1226 19 6 6.1962 1.7098 5.4502 20 6 7.7230 1.8084 5.4586 21 6 5.6255 2.5368 6.6040 22 6 3.7983 0.5282 4.0077 23 6 3.6845 0.2274 2.5295 24 8 3.7010 -0.8835 2.0433 25 1 -0.3633 0.5232 -0.8846 26 1 -0.3633 -1.0276 -0.0108 27 1 -0.3633 0.5045 0.8953 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.5674 1.7050 -2.0028 31 1 0.8160 1.7316 -1.6865 32 1 1.0538 4.3847 -4.1391 33 1 3.8719 2.3762 0.0190 34 1 3.9676 0.6013 -0.0753 35 1 2.5521 2.9099 2.8630 36 1 4.2021 3.3233 2.3093 37 1 6.1321 1.7166 3.2969 38 1 5.8785 3.3116 4.0451 39 1 5.8987 0.6679 5.5680 40 1 8.0205 2.8503 5.3407 41 1 8.1066 1.4261 6.4045 42 1 8.1297 1.2192 4.6366 43 1 6.0094 2.1544 7.5498 44 1 5.9230 3.5788 6.4862 45 1 4.5377 2.4666 6.5980 46 1 4.5964 -0.0630 4.4569 47 1 2.8516 0.3352 4.5123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072915520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = -67.407235 kcal Electronic energy + Delta-G solvation = -23406.217110 eV Core-core repulsion = 20201.459998 eV Total energy + Delta-G solvation = -3204.757112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.58766 -38.60787 -38.16849 -36.38651 -34.74938 -33.14393 -31.44164 -29.19017 -28.78524 -27.90506 -27.03226 -25.61519 -24.48643 -22.17054 -21.76521 -20.70477 -20.06502 -18.59994 -17.84066 -17.50494 -16.72243 -16.51737 -16.14646 -15.64015 -15.38481 -15.19868 -15.02319 -14.73358 -14.51628 -14.17401 -14.02598 -13.87955 -13.46703 -13.40828 -13.11822 -12.90935 -12.83300 -12.74542 -12.63894 -12.49041 -12.31020 -12.30116 -12.14629 -12.02313 -11.67748 -11.42151 -11.34810 -11.28791 -11.19666 -10.71510 -10.60565 -9.78979 -9.13461 -8.18277 -6.28782 1.43289 1.44235 1.57021 1.61071 2.10056 2.41995 3.13520 3.31741 3.46195 3.49588 3.82662 3.99600 4.12287 4.14989 4.19137 4.31545 4.38956 4.42443 4.51416 4.60879 4.63116 4.72526 4.75338 4.80654 4.84581 4.89426 4.96346 4.98846 5.02609 5.10242 5.15926 5.17237 5.19104 5.22587 5.27446 5.31781 5.43290 5.51829 5.58407 5.64664 5.70323 6.04839 6.25009 6.30895 6.54579 6.85539 7.21797 7.41030 8.92755 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016073 B = 0.004636 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.651312 B = 6038.231401 C = 7279.292902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.049 3.951 3 N -0.548 5.548 4 C 0.210 3.790 5 C -0.515 4.515 6 H 0.067 0.933 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.970 3.030 10 H -0.258 1.258 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.301 3.699 14 N -0.600 5.600 15 C 0.104 3.896 16 C -0.083 4.083 17 H 0.127 0.873 18 C -0.104 4.104 19 C -0.096 4.096 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.140 4.140 23 C 0.503 3.497 24 O -0.588 6.588 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.008 0.992 29 H 0.073 0.927 30 H -0.040 1.040 31 H 0.016 0.984 32 H 0.264 0.736 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -1.208 20.470 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.079 4.079 3 N -0.274 5.274 4 C 0.084 3.916 5 C -0.554 4.554 6 H 0.085 0.915 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.794 3.206 10 H -0.181 1.181 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.089 3.911 14 N -0.333 5.333 15 C -0.018 4.018 16 C -0.102 4.102 17 H 0.145 0.855 18 C -0.142 4.142 19 C -0.114 4.114 20 C -0.206 4.206 21 C -0.204 4.204 22 C -0.179 4.179 23 C 0.293 3.707 24 O -0.470 6.470 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.026 0.974 29 H 0.092 0.908 30 H -0.022 1.022 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.130 0.870 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.015 -1.445 20.316 21.887 hybrid contribution 0.266 0.188 -1.595 1.628 sum 8.281 -1.257 18.721 20.509 Atomic orbital electron populations 1.21654 0.94188 1.01425 1.01613 1.22153 0.96975 0.89239 0.99538 1.61937 1.17372 1.15963 1.32172 1.19406 0.94395 0.94211 0.83610 1.21429 1.46226 0.91135 0.96589 0.91503 1.25908 0.94793 1.04135 0.94701 1.70108 1.48340 1.37141 1.02041 0.85328 0.77574 0.78942 0.78730 1.18125 1.20705 1.20801 1.21503 0.89215 1.00638 0.79762 1.48513 1.69985 1.08503 1.06304 1.22337 1.02008 0.87755 0.89716 1.22266 0.97215 0.93788 0.96919 0.85546 1.21652 0.93131 1.02020 0.97397 1.21128 0.95451 1.00251 0.94601 1.21845 0.95326 1.01842 1.01586 1.21883 1.01456 0.99830 0.97277 1.22474 1.05789 0.98593 0.91068 1.21754 0.74129 0.83356 0.91488 1.90639 1.53758 1.25397 1.77161 0.94217 0.90935 0.92305 0.97365 0.90833 1.02206 0.96622 0.92767 0.89135 0.94977 0.90986 0.89972 0.93649 0.90376 0.91068 0.92506 0.92111 0.93624 0.92510 0.92523 0.91615 0.86986 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.99 71.98 0.72 -4.21 16 2 C 0.05 2.06 5.53 86.31 0.48 2.54 16 3 N -0.55 -24.66 4.48 -913.17 -4.09 -28.75 16 4 C 0.21 11.22 4.54 85.56 0.39 11.61 16 5 C -0.52 -28.31 8.52 25.60 0.22 -28.10 16 6 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.94 -55.73 13.29 21.45 0.28 -55.44 16 9 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.30 12.21 5.55 170.80 0.95 13.16 16 14 N -0.60 -19.65 3.14 -829.05 -2.61 -22.26 16 15 C 0.10 2.54 6.90 86.83 0.60 3.14 16 16 C -0.08 -1.38 2.95 -9.74 -0.03 -1.40 16 17 H 0.13 1.44 6.54 -2.38 -0.02 1.42 16 18 C -0.10 -1.63 4.12 30.60 0.13 -1.50 16 19 C -0.10 -1.23 2.82 -10.80 -0.03 -1.26 16 20 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16 21 C -0.15 -1.51 8.96 71.98 0.65 -0.87 16 22 C -0.14 -2.82 6.26 30.59 0.19 -2.63 16 23 C 0.50 16.21 7.36 87.90 0.65 16.85 16 24 O -0.59 -23.85 15.79 -3.01 -0.05 -23.90 16 25 H 0.04 1.64 6.52 -2.38 -0.02 1.62 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.01 0.36 8.05 -2.38 -0.02 0.34 16 29 H 0.07 3.09 5.22 -2.39 -0.01 3.07 16 30 H -0.04 -2.31 8.00 -2.38 -0.02 -2.33 16 31 H 0.02 0.91 6.23 -2.39 -0.01 0.90 16 32 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 33 H 0.09 3.78 7.25 -2.39 -0.02 3.76 16 34 H 0.03 1.39 7.71 -2.39 -0.02 1.37 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.94 7.91 -2.39 -0.02 1.92 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 0.93 6.38 -2.39 -0.02 0.92 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.59 6.53 -2.38 -0.02 0.57 16 46 H 0.11 2.00 6.23 -2.39 -0.01 1.98 16 47 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.03 363.97 2.51 -65.53 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.92 Total: 13.18 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.02 Total: 6.66 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -6.41 Total: -106.45 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -68.03 2.51 -65.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072915520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.882 kcal (2) G-P(sol) polarization free energy of solvation -68.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds