Wall clock time and date at job start Tue Mar 31 2020 05:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46846 * 2 1 4 4 C 1.46900 * 111.00052 * 301.89493 * 3 2 1 5 5 C 1.50704 * 109.47293 * 289.04381 * 4 3 2 6 6 H 1.08003 * 119.99601 * 4.88286 * 5 4 3 7 7 C 1.37869 * 119.99869 * 184.89103 * 5 4 3 8 8 N 1.31519 * 120.00409 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99806 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47299 * 90.00006 * 9 7 5 11 11 H 1.48502 * 109.47144 * 209.99990 * 9 7 5 12 12 H 1.48499 * 109.47095 * 329.99368 * 9 7 5 13 13 C 1.46897 * 111.00128 * 65.85185 * 3 2 1 14 14 N 1.46498 * 109.47204 * 85.45472 * 13 3 2 15 15 C 1.46764 * 124.35163 * 270.02078 * 14 13 3 16 16 C 1.54480 * 105.46999 * 162.98173 * 15 14 13 17 17 H 1.09004 * 110.95978 * 143.53900 * 16 15 14 18 18 C 1.52998 * 110.97151 * 267.29800 * 16 15 14 19 19 C 1.53000 * 109.47233 * 287.79247 * 18 16 15 20 20 C 1.52998 * 109.46988 * 174.29239 * 19 18 16 21 21 C 1.52996 * 109.47585 * 294.29254 * 19 18 16 22 22 C 1.54624 * 101.76717 * 25.42147 * 16 15 14 23 23 C 1.34418 * 124.34657 * 90.02624 * 14 13 3 24 24 O 1.21282 * 124.94812 * 0.66925 * 23 14 13 25 25 H 1.09004 * 109.47120 * 65.35640 * 1 2 3 26 26 H 1.09000 * 109.46866 * 185.34921 * 1 2 3 27 27 H 1.08998 * 109.47020 * 305.35199 * 1 2 3 28 28 H 1.08996 * 109.46891 * 239.99900 * 2 1 3 29 29 H 1.08994 * 109.46995 * 119.99501 * 2 1 3 30 30 H 1.09001 * 109.46816 * 49.04076 * 4 3 2 31 31 H 1.09000 * 109.47421 * 169.03674 * 4 3 2 32 32 H 0.96996 * 120.00044 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47036 * 325.45247 * 13 3 2 34 34 H 1.09005 * 109.47162 * 205.45367 * 13 3 2 35 35 H 1.08998 * 110.24053 * 43.98937 * 15 14 13 36 36 H 1.08996 * 110.31900 * 282.02260 * 15 14 13 37 37 H 1.08994 * 109.47008 * 47.79312 * 18 16 15 38 38 H 1.09006 * 109.47143 * 167.79580 * 18 16 15 39 39 H 1.09005 * 109.47100 * 54.28975 * 19 18 16 40 40 H 1.08998 * 109.47562 * 60.00296 * 20 19 18 41 41 H 1.09002 * 109.47163 * 180.02562 * 20 19 18 42 42 H 1.09008 * 109.47245 * 299.99962 * 20 19 18 43 43 H 1.08998 * 109.47581 * 185.50037 * 21 19 18 44 44 H 1.09005 * 109.47001 * 305.50550 * 21 19 18 45 45 H 1.09007 * 109.47185 * 65.49748 * 21 19 18 46 46 H 1.09000 * 110.48774 * 216.51931 * 22 16 15 47 47 H 1.08998 * 110.48978 * 93.87435 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5119 2.1229 -1.1644 5 6 2.1864 1.6164 -2.4133 6 1 2.8595 0.7735 -2.3595 7 6 1.9442 2.2291 -3.6243 8 7 1.1243 3.2553 -3.6899 9 14 2.7808 1.6017 -5.1723 10 1 1.9302 0.5642 -5.8089 11 1 2.9792 2.7284 -6.1191 12 1 4.0981 1.0139 -4.8195 13 6 1.6662 2.0684 1.2514 14 7 2.6840 1.7858 2.2664 15 6 2.6342 0.6509 3.1957 16 6 4.0696 0.5075 3.7483 17 1 4.0558 0.2124 4.7975 18 6 4.8813 -0.4847 2.9132 19 6 4.3871 -1.9065 3.1877 20 6 5.0991 -2.8837 2.2502 21 6 4.6902 -2.2804 4.6399 22 6 4.6155 1.9449 3.5849 23 6 3.7835 2.5328 2.4664 24 8 4.0650 3.5351 1.8443 25 1 -0.3633 0.4285 -0.9341 26 1 -0.3633 -1.0232 0.0958 27 1 -0.3633 0.5946 0.8382 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 0.4353 1.9745 -1.2472 31 1 1.7239 3.1850 -1.0422 32 1 0.9536 3.6861 -4.5420 33 1 0.6970 1.7109 1.5993 34 1 1.6157 3.1431 1.0768 35 1 2.3410 -0.2564 2.6675 36 1 1.9363 0.8566 4.0073 37 1 4.7579 -0.2551 1.8549 38 1 5.9352 -0.4084 3.1811 39 1 3.3118 -1.9567 3.0165 40 1 6.1744 -2.8335 2.4215 41 1 4.7468 -3.8966 2.4455 42 1 4.8832 -2.6174 1.2155 43 1 4.4277 -3.3247 4.8087 44 1 5.7523 -2.1360 4.8382 45 1 4.1067 -1.6465 5.3077 46 1 5.6690 1.9236 3.3060 47 1 4.4747 2.5133 4.5042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072915521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:10 Heat of formation + Delta-G solvation = -64.124841 kcal Electronic energy + Delta-G solvation = -23779.027367 eV Core-core repulsion = 20574.412590 eV Total energy + Delta-G solvation = -3204.614777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52585 -38.79771 -38.27531 -36.26777 -34.76899 -33.12257 -31.02999 -29.24941 -28.69158 -27.86970 -27.05996 -25.66103 -25.00622 -22.09330 -21.67295 -20.69082 -19.94544 -18.43861 -17.55291 -17.43398 -17.01220 -16.66690 -16.05324 -15.83915 -15.63061 -15.07955 -14.87871 -14.70775 -14.53779 -14.29152 -14.06869 -13.58407 -13.39767 -13.23205 -13.10517 -12.91675 -12.86835 -12.78992 -12.65593 -12.53564 -12.48482 -12.22465 -12.12257 -11.93995 -11.56156 -11.47448 -11.37372 -11.32183 -11.14834 -10.71313 -10.61712 -9.72834 -8.98459 -8.20874 -6.30752 1.36093 1.39059 1.49842 1.65683 2.17204 2.38908 3.10318 3.40408 3.48860 3.52373 3.82428 3.98974 4.07393 4.16392 4.22722 4.32480 4.33041 4.42768 4.46817 4.60154 4.64933 4.68849 4.72918 4.87560 4.90031 4.91964 4.94409 5.01876 5.02105 5.09000 5.16071 5.18777 5.25576 5.30873 5.34763 5.44799 5.45415 5.58267 5.61030 5.66568 5.69978 6.04826 6.21558 6.47094 6.58371 6.83379 7.29907 7.38184 8.89417 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.004855 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.767221 B = 5765.873438 C = 6278.895879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.066 3.934 3 N -0.560 5.560 4 C 0.213 3.787 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.287 3.713 14 N -0.604 5.604 15 C 0.096 3.904 16 C -0.083 4.083 17 H 0.137 0.863 18 C -0.107 4.107 19 C -0.092 4.092 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.139 4.139 23 C 0.500 3.500 24 O -0.597 6.597 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.084 0.916 30 H -0.010 1.010 31 H -0.014 1.014 32 H 0.264 0.736 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -13.543 20.870 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.062 4.062 3 N -0.286 5.286 4 C 0.087 3.913 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.076 3.924 14 N -0.337 5.337 15 C -0.025 4.025 16 C -0.102 4.102 17 H 0.154 0.846 18 C -0.145 4.145 19 C -0.111 4.111 20 C -0.207 4.207 21 C -0.201 4.201 22 C -0.179 4.179 23 C 0.289 3.711 24 O -0.478 6.478 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.008 0.992 31 H 0.004 0.996 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.119 0.881 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.208 -12.914 20.352 24.468 hybrid contribution -0.607 0.476 -1.625 1.798 sum 3.601 -12.438 18.728 22.768 Atomic orbital electron populations 1.22296 0.97746 1.02721 1.01033 1.22038 0.93264 0.89245 1.01610 1.61824 1.61123 1.03455 1.02202 1.19343 0.92944 0.91502 0.87505 1.21393 1.26402 1.15289 0.92506 0.92569 1.25875 0.96041 0.95104 1.02594 1.70081 1.37620 1.23142 1.26675 0.85420 0.78922 0.77989 0.78506 1.19165 1.20821 1.19516 1.21650 0.89314 0.97136 0.84339 1.48563 1.22896 1.28775 1.33515 1.22576 0.98907 0.88569 0.92443 1.22283 0.92666 0.92564 1.02656 0.84564 1.21670 0.99921 0.94344 0.98549 1.21084 1.00243 0.93364 0.96392 1.21849 1.00690 0.99416 0.98759 1.21866 1.01982 1.01600 0.94653 1.22454 1.00187 0.97649 0.97630 1.21903 0.82096 0.82581 0.84516 1.90694 1.73990 1.28496 1.54643 0.94668 0.90077 0.92208 0.92719 0.89771 0.99240 0.99570 0.92734 0.89960 0.93267 0.89924 0.88439 0.94774 0.90714 0.91063 0.92646 0.91964 0.94446 0.92550 0.92536 0.91062 0.88130 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.80 9.22 71.98 0.66 -5.13 16 2 C 0.07 2.40 5.88 86.31 0.51 2.90 16 3 N -0.56 -25.00 4.76 -913.16 -4.35 -29.35 16 4 C 0.21 11.85 4.50 85.56 0.38 12.23 16 5 C -0.52 -30.74 8.68 25.60 0.22 -30.52 16 6 H 0.06 3.31 7.27 -2.91 -0.02 3.29 16 7 C 0.00 0.10 5.46 84.65 0.46 0.56 16 8 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 9 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.29 10.94 5.66 170.81 0.97 11.91 16 14 N -0.60 -18.87 3.17 -829.04 -2.63 -21.50 16 15 C 0.10 1.83 6.65 86.83 0.58 2.41 16 16 C -0.08 -1.25 3.00 -9.74 -0.03 -1.28 16 17 H 0.14 1.05 6.47 -2.38 -0.02 1.03 16 18 C -0.11 -1.90 4.06 30.59 0.12 -1.77 16 19 C -0.09 -1.32 2.85 -10.80 -0.03 -1.35 16 20 C -0.15 -2.46 9.19 71.98 0.66 -1.80 16 21 C -0.14 -1.39 8.86 71.98 0.64 -0.76 16 22 C -0.14 -2.92 6.41 30.59 0.20 -2.72 16 23 C 0.50 17.59 8.02 87.90 0.71 18.30 16 24 O -0.60 -28.77 17.59 -3.04 -0.05 -28.83 16 25 H 0.03 1.39 6.44 -2.39 -0.02 1.38 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 1.73 6.07 -2.39 -0.01 1.72 16 28 H 0.05 2.24 7.15 -2.39 -0.02 2.22 16 29 H 0.08 2.47 5.99 -2.39 -0.01 2.45 16 30 H -0.01 -0.56 5.84 -2.39 -0.01 -0.58 16 31 H -0.01 -0.88 7.65 -2.39 -0.02 -0.90 16 32 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.08 2.61 5.75 -2.39 -0.01 2.60 16 34 H 0.05 2.23 7.27 -2.38 -0.02 2.21 16 35 H 0.08 1.54 4.60 -2.39 -0.01 1.53 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 38 H 0.07 1.20 8.12 -2.38 -0.02 1.18 16 39 H 0.07 1.02 6.75 -2.38 -0.02 1.01 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 42 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.07 0.49 6.71 -2.38 -0.02 0.47 16 46 H 0.10 2.11 7.89 -2.39 -0.02 2.09 16 47 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -78.64 359.62 2.26 -76.38 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.93 Total: 10.12 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.05 Total: 2.98 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -6.69 Total: -109.03 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.05 Total: -28.83 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -78.64 2.26 -76.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072915521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.257 kcal (2) G-P(sol) polarization free energy of solvation -78.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds