Wall clock time and date at job start Tue Mar 31 2020 05:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47240 * 2 1 4 4 C 1.46498 * 119.99680 * 269.99700 * 3 2 1 5 5 C 1.50690 * 109.47269 * 269.99893 * 4 3 2 6 6 H 1.08007 * 120.00406 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00324 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00314 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99583 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.46850 * 89.99983 * 9 7 5 11 11 H 1.48498 * 109.46887 * 209.99872 * 9 7 5 12 12 H 1.48496 * 109.46958 * 329.99817 * 9 7 5 13 13 C 1.34770 * 120.00075 * 89.99833 * 3 2 1 14 14 O 1.21275 * 120.00342 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99924 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.46988 * 174.59431 * 15 13 3 17 17 C 1.46847 * 110.99385 * 300.51989 * 16 15 13 18 18 H 1.08995 * 109.46167 * 65.83347 * 17 16 15 19 19 C 1.53003 * 109.45773 * 305.85713 * 17 16 15 20 20 C 1.53033 * 109.51600 * 185.85129 * 17 16 15 21 21 C 1.53114 * 109.27775 * 300.81435 * 20 17 16 22 22 C 1.53116 * 109.16448 * 57.65671 * 21 20 17 23 23 C 1.46851 * 111.00266 * 64.72192 * 16 15 13 24 24 H 1.08996 * 109.46203 * 294.17015 * 23 16 15 25 25 C 1.52998 * 109.45954 * 54.14547 * 23 16 15 26 26 H 1.08995 * 109.47458 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47056 * 300.00258 * 1 2 3 28 28 H 1.08999 * 109.46925 * 59.99762 * 1 2 3 29 29 H 1.08997 * 109.47056 * 239.99742 * 2 1 3 30 30 H 1.09007 * 109.46803 * 119.99940 * 2 1 3 31 31 H 1.09002 * 109.47234 * 30.00744 * 4 3 2 32 32 H 1.09008 * 109.46736 * 150.00099 * 4 3 2 33 33 H 0.97001 * 120.00388 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47545 * 54.59296 * 15 13 3 35 35 H 1.08997 * 109.47122 * 294.59074 * 15 13 3 36 36 H 1.08997 * 109.47658 * 306.21059 * 19 17 16 37 37 H 1.09010 * 109.46930 * 66.21522 * 19 17 16 38 38 H 1.09005 * 109.46600 * 186.20995 * 19 17 16 39 39 H 1.08997 * 109.50412 * 180.86956 * 20 17 16 40 40 H 1.09005 * 109.53956 * 60.77211 * 20 17 16 41 41 H 1.09002 * 109.52305 * 297.74797 * 21 20 17 42 42 H 1.08999 * 109.52225 * 177.56213 * 21 20 17 43 43 H 1.08996 * 109.50611 * 182.40890 * 22 21 20 44 44 H 1.08996 * 109.50498 * 62.28179 * 22 21 20 45 45 H 1.09006 * 109.47252 * 173.29541 * 25 23 16 46 46 H 1.09008 * 109.47071 * 293.28337 * 25 23 16 47 47 H 1.08998 * 109.47472 * 53.28759 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3428 1.2301 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3914 2.1832 -3.2573 9 14 3.0136 3.4370 -3.9281 10 1 3.1174 4.8568 -3.5059 11 1 3.4067 3.3148 -5.3549 12 1 1.6138 2.9712 -3.7587 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3060 2.4723 16 7 2.4317 2.1576 3.5857 17 6 3.8621 2.4711 3.4756 18 1 4.0322 3.0858 2.5918 19 6 4.6608 1.1717 3.3543 20 6 4.3157 3.2338 4.7224 21 6 3.4999 4.5232 4.8508 22 6 2.0110 4.1717 4.9148 23 6 1.6242 3.3818 3.6624 24 1 1.8051 3.9921 2.7776 25 6 0.1415 3.0109 3.7314 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8901 31 1 1.5818 1.6877 -2.0284 32 1 2.0957 3.1410 -1.1384 33 1 5.7178 2.5743 -4.0828 34 1 2.5499 0.3695 2.4891 35 1 0.9275 1.0966 2.5733 36 1 4.4062 0.5100 4.1821 37 1 4.4183 0.6830 2.4105 38 1 5.7270 1.3966 3.3836 39 1 5.3738 3.4799 4.6335 40 1 4.1590 2.6146 5.6057 41 1 3.6871 5.1603 3.9864 42 1 3.7896 5.0483 5.7610 43 1 1.4226 5.0879 4.9632 44 1 1.8176 3.5669 5.8006 45 1 -0.4500 3.9093 3.9078 46 1 -0.1632 2.5547 2.7894 47 1 -0.0189 2.3045 4.5459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075021044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:43 Heat of formation + Delta-G solvation = -36.826700 kcal Electronic energy + Delta-G solvation = -24542.068431 eV Core-core repulsion = 21338.637390 eV Total energy + Delta-G solvation = -3203.431041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30853 -38.07336 -35.38314 -33.46732 -33.34787 -32.64679 -30.35795 -28.91762 -27.95274 -26.20363 -26.11791 -22.99659 -22.63426 -21.22538 -20.84582 -19.58680 -18.18518 -16.93958 -16.49668 -15.84724 -15.69849 -14.98741 -14.94537 -14.17888 -14.12180 -13.83599 -13.50153 -13.42060 -13.03358 -12.62483 -12.48724 -12.29284 -12.25455 -12.17862 -11.88075 -11.58335 -11.52199 -11.48597 -11.40114 -11.35037 -10.97082 -10.73214 -10.52439 -10.50530 -10.32525 -10.14981 -10.05032 -9.91979 -9.67432 -9.49445 -8.60440 -7.71287 -7.66074 -6.10221 -4.08645 3.26981 3.30400 3.33056 3.34898 3.85668 4.08670 4.37844 4.92211 4.99278 5.02796 5.10494 5.19410 5.23701 5.28624 5.46680 5.48224 5.56788 5.61935 5.64526 5.70702 5.74133 5.77443 5.83755 5.95947 5.98563 5.99612 6.02777 6.10455 6.12864 6.17146 6.20754 6.31012 6.38852 6.39907 6.42185 6.53492 6.69662 6.74939 6.93454 7.28474 7.36432 7.40398 7.60398 8.25897 8.45949 8.91393 8.98071 9.50434 11.03147 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.005740 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.041696 B = 4876.679112 C = 5360.127749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.591 5.591 4 C 0.215 3.785 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.479 3.521 14 O -0.539 6.539 15 C 0.027 3.973 16 N -0.505 5.505 17 C 0.061 3.939 18 H 0.081 0.919 19 C -0.145 4.145 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.105 4.105 23 C 0.061 3.939 24 H 0.078 0.922 25 C -0.145 4.145 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 -2.352 14.759 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.323 5.323 4 C 0.094 3.906 5 C -0.564 4.564 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.265 3.735 14 O -0.418 6.418 15 C -0.104 4.104 16 N -0.228 5.228 17 C -0.047 4.047 18 H 0.099 0.901 19 C -0.202 4.202 20 C -0.143 4.143 21 C -0.159 4.159 22 C -0.143 4.143 23 C -0.047 4.047 24 H 0.096 0.904 25 C -0.202 4.202 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.875 -1.963 15.044 17.577 hybrid contribution -0.315 0.844 -1.568 1.809 sum -9.190 -1.118 13.476 16.350 Atomic orbital electron populations 1.22223 0.96748 1.01625 1.02133 1.21454 0.93421 0.83931 1.03109 1.48112 1.63608 1.13311 1.07272 1.19618 0.97240 0.93301 0.80399 1.21306 0.95303 1.32767 1.07055 0.90858 1.24855 0.94962 0.95821 0.97355 1.69892 1.15118 1.45001 1.23584 0.86862 0.81485 0.81588 0.79811 1.20010 1.21061 1.19145 1.21696 0.78233 0.87403 0.86148 1.90556 1.45975 1.18375 1.86871 1.22442 1.02747 0.97865 0.87392 1.62491 1.03581 1.17521 1.39256 1.21893 0.86935 0.96897 0.98941 0.90145 1.21870 0.99578 0.97234 1.01562 1.21563 0.98796 0.96049 0.97941 1.21568 0.95362 0.97606 1.01366 1.21561 0.95943 0.98927 0.97885 1.21866 0.92321 0.91518 0.98984 0.90413 1.21886 0.95401 1.01385 1.01542 0.91902 0.93024 0.92313 0.89790 0.91328 0.95491 0.94827 0.92590 0.88252 0.88292 0.92398 0.92724 0.92335 0.91969 0.91828 0.91973 0.92410 0.92150 0.91792 0.92520 0.93081 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.61 5.96 -4.04 -0.02 1.58 16 3 N -0.59 -11.88 2.46 -175.06 -0.43 -12.31 16 4 C 0.22 5.24 4.23 -5.20 -0.02 5.22 16 5 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 6 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 9 Si 0.88 21.71 27.47 -169.99 -4.67 17.05 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.48 9.41 6.96 -10.99 -0.08 9.34 16 14 O -0.54 -12.58 11.22 5.56 0.06 -12.52 16 15 C 0.03 0.41 3.63 -4.97 -0.02 0.39 16 16 N -0.50 -7.52 4.53 -220.18 -1.00 -8.52 16 17 C 0.06 0.97 1.98 -67.72 -0.13 0.84 16 18 H 0.08 1.63 5.66 -51.93 -0.29 1.34 16 19 C -0.14 -2.14 8.54 37.16 0.32 -1.82 16 20 C -0.11 -1.42 5.37 -26.66 -0.14 -1.56 16 21 C -0.12 -1.56 6.00 -26.61 -0.16 -1.72 16 22 C -0.11 -1.32 5.37 -26.65 -0.14 -1.46 16 23 C 0.06 0.89 2.06 -67.72 -0.14 0.75 16 24 H 0.08 1.43 5.71 -51.93 -0.30 1.13 16 25 C -0.14 -1.78 8.53 37.16 0.32 -1.46 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.61 7.39 -51.93 -0.38 0.22 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.07 0.89 6.29 -51.93 -0.33 0.56 16 31 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 32 H 0.03 0.88 6.85 -51.92 -0.36 0.53 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.10 1.39 5.35 -51.93 -0.28 1.12 16 35 H 0.10 1.29 5.33 -51.93 -0.28 1.02 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.89 6.63 -51.92 -0.34 0.55 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.66 6.64 -51.92 -0.34 0.31 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -32.27 349.77 -8.63 -40.89 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.35 Total: 2.07 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.29 Total: -5.00 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.65 Total: -47.76 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.06 Total: -12.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.27 -8.63 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075021044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.065 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds